Wall clock time and date at job start Tue Mar 31 2020 19:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30886 * 125.89661 * 2 1 4 4 C 1.33653 * 109.77037 * 179.97438 * 3 2 1 5 5 N 1.39604 * 125.60952 * 179.97438 * 4 3 2 6 6 C 1.46955 * 110.99992 * 56.20063 * 5 4 3 7 7 C 1.53051 * 109.36519 * 183.18887 * 6 5 4 8 8 N 1.46955 * 109.36442 * 301.59825 * 7 6 5 9 9 C 1.46897 * 111.00071 * 183.18940 * 8 7 6 10 10 H 1.09002 * 109.46892 * 192.29150 * 9 8 7 11 11 C 1.52999 * 109.47027 * 312.28823 * 9 8 7 12 12 C 1.50701 * 109.47295 * 72.29107 * 9 8 7 13 13 O 1.21280 * 119.99936 * 343.68019 * 12 9 8 14 14 N 1.34778 * 119.99736 * 163.67662 * 12 9 8 15 15 C 1.46502 * 120.00212 * 359.97438 * 14 12 9 16 16 C 1.46501 * 119.99739 * 180.02562 * 14 12 9 17 17 C 1.50693 * 109.47452 * 89.99825 * 16 14 12 18 18 H 1.08001 * 120.00065 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00445 * 179.97438 * 17 16 14 20 20 N 1.31506 * 120.00431 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99538 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47399 * 89.99578 * 21 19 17 23 23 H 1.48503 * 109.46983 * 209.99427 * 21 19 17 24 24 H 1.48493 * 109.47237 * 329.99353 * 21 19 17 25 25 C 1.46959 * 110.88193 * 59.31714 * 8 7 6 26 26 C 1.46961 * 110.99967 * 179.97438 * 5 4 3 27 27 N 1.31199 * 108.77758 * 0.22786 * 4 3 2 28 28 N 1.34341 * 125.89336 * 179.97438 * 2 1 3 29 29 H 0.97004 * 126.75805 * 359.97438 * 28 2 1 30 30 H 1.09000 * 109.47213 * 89.99831 * 1 2 3 31 31 H 1.09001 * 109.47089 * 210.00153 * 1 2 3 32 32 H 1.09001 * 109.46952 * 329.99909 * 1 2 3 33 33 H 1.09001 * 109.49234 * 63.21786 * 6 5 4 34 34 H 1.09004 * 109.49077 * 303.15102 * 6 5 4 35 35 H 1.09005 * 109.49221 * 181.62667 * 7 6 5 36 36 H 1.09003 * 109.48901 * 61.56132 * 7 6 5 37 37 H 1.09002 * 109.46888 * 180.02562 * 11 9 8 38 38 H 1.08997 * 109.47670 * 300.00357 * 11 9 8 39 39 H 1.09002 * 109.47018 * 60.00403 * 11 9 8 40 40 H 1.09002 * 109.46550 * 90.00416 * 15 14 12 41 41 H 1.08998 * 109.46833 * 209.99891 * 15 14 12 42 42 H 1.08993 * 109.47393 * 330.00210 * 15 14 12 43 43 H 1.09005 * 109.46761 * 209.99993 * 16 14 12 44 44 H 1.09008 * 109.47162 * 329.99651 * 16 14 12 45 45 H 0.97007 * 120.00465 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.48855 * 60.64580 * 25 8 7 47 47 H 1.09000 * 109.48821 * 180.69002 * 25 8 7 48 48 H 1.09002 * 109.48430 * 56.84692 * 26 5 4 49 49 H 1.08997 * 109.50826 * 296.79206 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0603 0.0000 4 6 3.5584 0.6891 0.0006 5 7 4.6545 1.5536 0.0002 6 6 4.5951 2.4798 1.1396 7 6 5.7681 3.4596 1.0589 8 7 7.0312 2.7085 1.0598 9 6 8.1846 3.6182 1.0595 10 1 9.0918 3.0547 0.8413 11 6 7.9842 4.6954 -0.0084 12 6 8.3111 4.2696 2.4125 13 8 7.3783 4.2443 3.1873 14 7 9.4608 4.8801 2.7617 15 6 10.5877 4.9101 1.8260 16 6 9.5839 5.5129 4.0772 17 6 10.1099 4.5089 5.0703 18 1 10.3309 3.5004 4.7532 19 6 10.3101 4.8780 6.3836 20 7 10.7687 4.0017 7.2504 21 14 9.9287 6.6225 6.9320 22 1 8.5166 6.7015 7.3848 23 1 10.8292 6.9975 8.0517 24 1 10.1369 7.5553 5.7956 25 6 7.0907 1.7823 -0.0796 26 6 5.9177 0.8025 0.0017 27 7 3.6191 -0.6215 -0.0040 28 7 2.2946 -1.0883 0.0005 29 1 2.0054 -2.0142 0.0012 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 4.6557 1.9157 2.0704 34 1 3.6564 3.0332 1.1100 35 1 5.7425 4.1291 1.9187 36 1 5.6924 4.0427 0.1411 37 1 8.8403 5.3702 -0.0090 38 1 7.8927 4.2244 -0.9871 39 1 7.0771 5.2590 0.2097 40 1 10.5176 5.8006 1.2013 41 1 11.5234 4.9311 2.3848 42 1 10.5607 4.0211 1.1960 43 1 10.2730 6.3550 4.0123 44 1 8.6060 5.8678 4.4027 45 1 10.9092 4.2612 8.1744 46 1 7.0299 2.3463 -1.0103 47 1 8.0295 1.2293 -0.0501 48 1 5.9434 0.1328 -0.8579 49 1 5.9934 0.2194 0.9194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931624585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:56 Heat of formation + Delta-G solvation = 63.862975 kcal Electronic energy + Delta-G solvation = -29845.656256 eV Core-core repulsion = 25844.671763 eV Total energy + Delta-G solvation = -4000.984493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.22736 -41.38271 -39.86106 -37.15165 -36.48840 -34.71925 -33.50026 -33.47740 -32.09104 -31.72551 -30.09472 -28.81332 -27.56623 -27.23436 -25.52507 -24.81540 -23.54678 -22.54252 -21.73455 -20.63887 -19.82319 -19.12052 -18.99979 -18.03834 -17.60864 -17.16619 -16.95095 -16.49723 -16.22739 -16.04137 -15.65771 -15.54264 -15.34003 -15.07144 -14.79529 -14.59660 -14.43220 -13.88893 -13.75325 -13.67694 -13.62491 -13.33776 -13.25788 -13.16453 -12.94830 -12.82658 -12.77427 -12.60069 -12.41029 -12.24529 -12.11089 -11.98898 -11.83090 -11.72268 -11.61783 -11.10725 -10.82339 -10.77692 -10.41793 -9.61174 -9.36653 -9.17447 -8.32829 -6.37516 0.52294 1.32627 1.37305 1.45537 1.52091 1.77150 1.85194 2.26397 2.31821 2.34833 2.93236 3.01686 3.41240 3.57066 3.65714 3.77918 3.97187 4.06649 4.07105 4.17562 4.24251 4.30290 4.34776 4.45845 4.60175 4.64055 4.69458 4.71039 4.73511 4.74872 4.77672 4.86366 4.88634 4.89994 4.96314 4.99537 5.05391 5.12033 5.13278 5.23447 5.47785 5.51295 5.66225 5.87137 6.01988 6.09667 6.22580 6.26874 6.64098 6.77608 7.06966 7.23543 7.51630 8.84407 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.002520 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.913026 B =11110.276580 C =11855.513019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.302 3.698 3 N -0.579 5.579 4 C 0.391 3.609 5 N -0.442 5.442 6 C 0.084 3.916 7 C 0.063 3.937 8 N -0.546 5.546 9 C 0.077 3.923 10 H 0.123 0.877 11 C -0.171 4.171 12 C 0.504 3.496 13 O -0.579 6.579 14 N -0.608 5.608 15 C 0.075 3.925 16 C 0.225 3.775 17 C -0.533 4.533 18 H 0.025 0.975 19 C 0.007 3.993 20 N -0.948 5.948 21 Si 0.950 3.050 22 H -0.278 1.278 23 H -0.275 1.275 24 H -0.236 1.236 25 C 0.062 3.938 26 C 0.072 3.928 27 N -0.373 5.373 28 N -0.472 5.472 29 H 0.457 0.543 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.023 0.977 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.017 0.983 45 H 0.268 0.732 46 H 0.066 0.934 47 H 0.104 0.896 48 H 0.100 0.900 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.026 -5.627 -23.280 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.024 3.976 3 N -0.312 5.312 4 C 0.021 3.979 5 N -0.166 5.166 6 C -0.044 4.044 7 C -0.065 4.065 8 N -0.271 5.271 9 C -0.035 4.035 10 H 0.140 0.860 11 C -0.230 4.230 12 C 0.293 3.707 13 O -0.459 6.459 14 N -0.339 5.339 15 C -0.067 4.067 16 C 0.103 3.897 17 C -0.571 4.571 18 H 0.044 0.956 19 C -0.190 4.190 20 N -0.588 5.588 21 Si 0.772 3.228 22 H -0.204 1.204 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.065 4.065 26 C -0.055 4.055 27 N -0.209 5.209 28 N -0.193 5.193 29 H 0.306 0.694 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.042 0.958 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.122 0.878 48 H 0.118 0.882 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.829 -5.656 -22.707 28.252 hybrid contribution -0.136 -0.376 1.146 1.214 sum -15.965 -6.032 -21.561 27.498 Atomic orbital electron populations 1.20683 0.79681 1.06607 1.06306 1.25219 0.98262 0.81474 0.92633 1.70231 1.00542 1.31407 1.29036 1.22405 0.90767 0.87795 0.96941 1.59233 0.99697 1.15593 1.42033 1.22073 1.00007 0.93546 0.88772 1.22235 0.87160 0.94994 1.02099 1.61882 1.01690 1.19524 1.43971 1.21603 0.95881 0.94674 0.91301 0.85980 1.22334 1.03640 0.98706 0.98290 1.21158 0.82010 0.78068 0.89501 1.90581 1.40411 1.60114 1.54748 1.47927 1.14079 1.55236 1.16692 1.22038 0.88589 1.03351 0.92681 1.19296 0.96308 0.93044 0.81064 1.21572 1.43261 0.97663 0.94632 0.95627 1.25892 0.94245 1.02495 0.96373 1.70060 1.47311 1.37129 1.04302 0.85688 0.78205 0.79549 0.79311 1.20384 1.20039 1.15853 1.22286 0.98281 0.93971 0.91990 1.22162 0.86090 0.95202 1.02089 1.78151 0.98955 1.10907 1.32887 1.47607 1.02716 1.10887 1.58110 0.69427 0.86854 0.86718 0.88269 0.95827 0.88809 0.90173 0.91942 0.89650 0.88967 0.92583 0.89930 0.91701 0.89357 0.93123 0.96484 0.92354 0.91542 0.87794 0.88197 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.51 71.24 0.75 0.34 16 2 C 0.30 5.26 8.23 138.24 1.14 6.40 16 3 N -0.58 -15.27 10.96 -189.12 -2.07 -17.34 16 4 C 0.39 11.27 7.39 260.92 1.93 13.20 16 5 N -0.44 -12.44 4.80 -707.12 -3.39 -15.84 16 6 C 0.08 2.55 5.53 86.31 0.48 3.03 16 7 C 0.06 1.91 4.43 86.31 0.38 2.29 16 8 N -0.55 -16.34 4.42 -874.86 -3.87 -20.20 16 9 C 0.08 2.16 1.93 44.17 0.09 2.25 16 10 H 0.12 2.92 6.27 -2.39 -0.01 2.91 16 11 C -0.17 -3.49 8.19 71.98 0.59 -2.90 16 12 C 0.50 20.56 6.85 87.66 0.60 21.16 16 13 O -0.58 -29.47 13.84 -3.03 -0.04 -29.52 16 14 N -0.61 -24.58 2.86 -851.13 -2.43 -27.01 16 15 C 0.08 2.08 9.36 127.77 1.20 3.28 16 16 C 0.23 11.11 4.23 85.63 0.36 11.47 16 17 C -0.53 -32.03 9.94 25.60 0.25 -31.78 16 18 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 19 C 0.01 0.45 5.47 84.66 0.46 0.91 16 20 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 21 Si 0.95 45.31 27.47 68.60 1.88 47.20 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 25 C 0.06 1.40 5.40 86.31 0.47 1.86 16 26 C 0.07 1.84 4.98 86.31 0.43 2.27 16 27 N -0.37 -9.89 11.83 -59.03 -0.70 -10.59 16 28 N -0.47 -8.17 7.43 -50.72 -0.38 -8.55 16 29 H 0.46 3.97 8.96 -213.10 -1.91 2.06 16 30 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 2.79 7.95 -2.38 -0.02 2.77 16 35 H 0.08 2.97 5.88 -2.38 -0.01 2.96 16 36 H 0.06 1.64 6.41 -2.39 -0.02 1.62 16 37 H 0.08 1.49 6.48 -2.39 -0.02 1.48 16 38 H 0.09 1.41 7.02 -2.39 -0.02 1.40 16 39 H 0.06 1.30 6.39 -2.39 -0.02 1.28 16 40 H 0.08 1.70 7.45 -2.39 -0.02 1.69 16 41 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 42 H 0.09 1.93 6.02 -2.39 -0.01 1.91 16 43 H 0.05 2.27 7.13 -2.38 -0.02 2.25 16 44 H 0.02 0.91 6.85 -2.38 -0.02 0.89 16 45 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 46 H 0.07 1.25 7.02 -2.39 -0.02 1.23 16 47 H 0.10 1.98 8.02 -2.39 -0.02 1.96 16 48 H 0.10 2.27 8.00 -2.39 -0.02 2.25 16 49 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -90.16 381.78 -2.56 -92.73 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -0.99 Total: 16.34 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 9.12 Total: 33.78 kcal Atomic # 7 Polarization: -147.99 SS G_CDS: -12.54 Total: -160.54 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.04 Total: -29.52 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.20 kcal Total: -90.16 -2.56 -92.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931624585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.592 kcal (2) G-P(sol) polarization free energy of solvation -90.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds