Wall clock time and date at job start Tue Mar 31 2020 19:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30889 * 125.89548 * 2 1 4 4 C 1.33653 * 109.77108 * 179.97438 * 3 2 1 5 5 N 1.39599 * 125.61227 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00090 * 180.02562 * 5 4 3 7 7 C 1.53049 * 109.36630 * 183.19026 * 6 5 4 8 8 N 1.46963 * 109.36171 * 301.59816 * 7 6 5 9 9 C 1.46896 * 111.00029 * 183.18886 * 8 7 6 10 10 C 1.52996 * 109.47255 * 169.99612 * 9 8 7 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.46506 * 120.00264 * 0.28128 * 13 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 16 16 C 1.50697 * 109.46949 * 90.00203 * 15 13 11 17 17 H 1.08004 * 120.00186 * 0.02562 * 16 15 13 18 18 C 1.37881 * 120.00081 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00103 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46927 * 59.99717 * 20 18 16 22 22 H 1.48496 * 109.47287 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47040 * 299.99940 * 20 18 16 24 24 C 1.46948 * 110.88098 * 59.31807 * 8 7 6 25 25 C 1.46961 * 110.99948 * 303.79869 * 5 4 3 26 26 N 1.31208 * 108.77600 * 0.22728 * 4 3 2 27 27 N 1.34347 * 125.89463 * 179.97438 * 2 1 3 28 28 H 0.97006 * 126.75500 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47152 * 90.00252 * 1 2 3 30 30 H 1.08994 * 109.47207 * 210.00480 * 1 2 3 31 31 H 1.09001 * 109.47241 * 330.00253 * 1 2 3 32 32 H 1.08999 * 109.49195 * 63.22059 * 6 5 4 33 33 H 1.09000 * 109.50588 * 303.16314 * 6 5 4 34 34 H 1.09001 * 109.49268 * 181.63068 * 7 6 5 35 35 H 1.09000 * 109.49067 * 61.56021 * 7 6 5 36 36 H 1.09004 * 109.47112 * 49.99605 * 9 8 7 37 37 H 1.09000 * 109.47386 * 289.99993 * 9 8 7 38 38 H 1.09004 * 109.47066 * 59.99965 * 10 9 8 39 39 H 1.08994 * 109.47405 * 299.99795 * 10 9 8 40 40 H 1.08998 * 109.46921 * 89.99095 * 14 13 11 41 41 H 1.08994 * 109.46996 * 209.99677 * 14 13 11 42 42 H 1.09001 * 109.46578 * 329.99540 * 14 13 11 43 43 H 1.09001 * 109.47567 * 210.00057 * 15 13 11 44 44 H 1.09005 * 109.47076 * 330.00563 * 15 13 11 45 45 H 0.96991 * 119.99957 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.48998 * 60.64771 * 24 8 7 47 47 H 1.09003 * 109.49079 * 180.70973 * 24 8 7 48 48 H 1.09000 * 109.48854 * 296.77905 * 25 5 4 49 49 H 1.09001 * 109.48551 * 56.82070 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0603 0.0000 4 6 3.5584 0.6891 0.0006 5 7 4.6544 1.5536 0.0002 6 6 5.9176 0.8026 0.0004 7 6 7.0906 1.7824 0.0804 8 7 7.0314 2.7074 -1.0600 9 6 8.1848 3.6171 -1.0604 10 6 8.2248 4.3894 -2.3805 11 6 9.4077 5.3232 -2.3806 12 8 10.1464 5.3663 -1.4197 13 7 9.6482 6.1059 -3.4511 14 6 8.7563 6.0536 -4.6122 15 6 10.8016 7.0092 -3.4537 16 6 11.9988 6.2936 -4.0242 17 1 11.9094 5.2685 -4.3525 18 6 13.2084 6.9474 -4.1272 19 7 13.3174 8.1955 -3.7270 20 14 14.6922 6.0605 -4.8351 21 1 14.3961 5.6327 -6.2259 22 1 15.8614 6.9761 -4.8377 23 1 14.9986 4.8679 -4.0050 24 6 5.7683 3.4584 -1.0603 25 6 4.5956 2.4782 -1.1406 26 7 3.6191 -0.6215 -0.0040 27 7 2.2946 -1.0883 0.0005 28 1 2.0054 -2.0143 0.0012 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 5.9936 0.2185 -0.9167 33 1 5.9432 0.1338 0.8607 34 1 8.0293 1.2291 0.0515 35 1 7.0297 2.3475 1.0105 36 1 9.1028 3.0400 -0.9492 37 1 8.0943 4.3190 -0.2314 38 1 7.3068 4.9666 -2.4917 39 1 8.3154 3.6876 -3.2095 40 1 7.9552 6.7822 -4.4880 41 1 9.3212 6.2850 -5.5151 42 1 8.3288 5.0545 -4.6971 43 1 10.5766 7.8841 -4.0637 44 1 11.0189 7.3240 -2.4330 45 1 14.1682 8.6555 -3.7998 46 1 5.6924 4.0425 -0.1432 47 1 5.7429 4.1270 -1.9208 48 1 4.6567 1.9128 -2.0704 49 1 3.6567 3.0313 -1.1123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931627817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:49 Heat of formation + Delta-G solvation = 75.605855 kcal Electronic energy + Delta-G solvation = -28662.689439 eV Core-core repulsion = 24662.214155 eV Total energy + Delta-G solvation = -4000.475283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.51419 -39.68674 -38.79670 -36.11809 -34.74732 -32.86654 -32.77667 -32.51960 -31.31087 -30.76287 -28.41644 -27.81614 -26.59469 -25.58535 -23.92169 -23.39083 -22.19512 -21.35196 -21.02259 -19.91213 -18.35698 -18.27898 -17.01443 -16.51754 -16.29058 -16.14608 -15.49887 -15.34663 -15.23224 -14.91950 -14.72046 -14.44424 -14.35031 -14.00357 -13.95137 -13.41210 -13.40492 -13.12436 -12.58546 -12.34848 -12.21933 -12.15039 -12.03578 -11.87560 -11.71948 -11.49758 -11.32046 -11.17594 -11.10089 -10.88403 -10.82244 -10.65354 -10.51104 -10.31258 -10.12879 -10.05470 -9.61103 -8.85584 -8.76079 -8.42005 -8.40444 -7.59940 -6.01389 -4.06108 1.20204 2.16109 2.47917 3.01988 3.33957 3.38169 3.40151 3.49661 3.63426 3.96924 4.17233 4.24894 4.47843 4.54337 4.75375 4.79387 4.84864 4.99167 5.04859 5.12220 5.19833 5.23745 5.27245 5.31512 5.32675 5.39068 5.46620 5.57618 5.65565 5.70758 5.73855 5.83966 5.86701 5.87853 5.97062 6.13061 6.15420 6.26614 6.33415 6.68847 6.77508 6.94432 6.97528 7.09894 7.47757 7.58202 7.78549 7.95091 8.26850 8.46693 8.93368 9.14233 9.58851 11.06610 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.030490 B = 0.001807 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.099127 B =15492.769628 C =15826.817424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.295 3.705 3 N -0.542 5.542 4 C 0.410 3.590 5 N -0.442 5.442 6 C 0.067 3.933 7 C 0.057 3.943 8 N -0.543 5.543 9 C 0.073 3.927 10 C -0.135 4.135 11 C 0.504 3.496 12 O -0.545 6.545 13 N -0.604 5.604 14 C 0.084 3.916 15 C 0.245 3.755 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.052 3.948 25 C 0.071 3.929 26 N -0.347 5.347 27 N -0.482 5.482 28 H 0.440 0.560 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.263 0.737 46 H 0.049 0.951 47 H 0.091 0.909 48 H 0.052 0.948 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.008 -17.530 5.189 33.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.016 3.984 3 N -0.274 5.274 4 C 0.040 3.960 5 N -0.166 5.166 6 C -0.061 4.061 7 C -0.071 4.071 8 N -0.268 5.268 9 C -0.054 4.054 10 C -0.175 4.175 11 C 0.290 3.710 12 O -0.424 6.424 13 N -0.336 5.336 14 C -0.060 4.060 15 C 0.126 3.874 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.077 4.077 25 C -0.057 4.057 26 N -0.182 5.182 27 N -0.202 5.202 28 H 0.286 0.714 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.109 0.891 48 H 0.070 0.930 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -26.849 -17.290 5.691 32.438 hybrid contribution 0.526 -1.005 -0.377 1.196 sum -26.322 -18.295 5.314 32.494 Atomic orbital electron populations 1.20419 0.83482 1.05145 1.04692 1.24320 0.96571 0.82455 0.95027 1.70245 1.00496 1.29367 1.27310 1.22220 0.90232 0.87414 0.96183 1.59134 0.99308 1.15544 1.42597 1.22212 0.85898 0.95114 1.02835 1.22176 0.97869 0.94575 0.92514 1.62182 1.02399 1.19724 1.42528 1.21797 0.92866 0.94340 0.96407 1.21645 0.97869 0.98415 0.99616 1.20300 0.86135 0.81369 0.83149 1.90666 1.49357 1.67716 1.34624 1.48158 1.28727 1.41564 1.15115 1.21635 0.93741 1.00486 0.90183 1.19273 0.81457 0.87960 0.98753 1.21409 0.94634 0.99007 1.41459 0.92519 1.24943 0.98735 0.94932 0.95540 1.69925 1.25819 1.10463 1.47222 0.86555 0.81891 0.79535 0.79411 1.20277 1.21189 1.20182 1.22269 0.88149 0.95046 1.02204 1.22273 0.99933 0.93768 0.89678 1.78285 0.96575 1.11128 1.32256 1.47686 1.03934 1.09838 1.58701 0.71448 0.88848 0.89755 0.88197 0.92276 0.89373 0.89201 0.93462 0.89667 0.93631 0.89812 0.88707 0.93840 0.90876 0.92309 0.95085 0.93874 0.92696 0.93320 0.89081 0.92988 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 10.51 36.00 0.38 0.19 16 2 C 0.30 2.21 8.23 -155.72 -1.28 0.93 16 3 N -0.54 -6.07 10.96 -11.13 -0.12 -6.20 16 4 C 0.41 4.96 7.39 -321.17 -2.37 2.58 16 5 N -0.44 -5.17 4.80 -174.85 -0.84 -6.01 16 6 C 0.07 0.72 4.98 -3.77 -0.02 0.71 16 7 C 0.06 0.63 5.61 -3.76 -0.02 0.60 16 8 N -0.54 -6.48 4.71 -234.47 -1.10 -7.58 16 9 C 0.07 1.04 4.25 -3.83 -0.02 1.03 16 10 C -0.13 -1.98 4.19 -27.88 -0.12 -2.10 16 11 C 0.50 10.48 7.67 -10.98 -0.08 10.39 16 12 O -0.55 -13.76 15.56 5.55 0.09 -13.68 16 13 N -0.60 -12.93 2.86 -182.95 -0.52 -13.46 16 14 C 0.08 1.33 10.25 59.85 0.61 1.94 16 15 C 0.24 6.51 5.16 -5.20 -0.03 6.49 16 16 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 17 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 20 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.05 0.55 5.41 -3.77 -0.02 0.53 16 25 C 0.07 0.75 5.53 -3.76 -0.02 0.73 16 26 N -0.35 -3.92 11.83 29.99 0.35 -3.56 16 27 N -0.48 -3.55 7.43 32.62 0.24 -3.31 16 28 H 0.44 1.52 8.96 -182.34 -1.63 -0.11 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.93 8.01 -51.93 -0.42 0.51 16 34 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.32 7.98 -51.93 -0.41 0.90 16 37 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.08 1.04 6.46 -51.93 -0.34 0.70 16 39 H 0.09 1.30 7.40 -51.93 -0.38 0.92 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 43 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 44 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.88 6.34 -51.93 -0.33 0.55 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.09 0.98 7.95 -51.93 -0.41 0.56 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -37.37 396.82 -12.87 -50.24 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -9.25 Total: -3.55 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: -3.41 Total: 10.19 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -1.25 Total: -66.29 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.37 -12.87 -50.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931627817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.846 kcal (2) G-P(sol) polarization free energy of solvation -37.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds