Wall clock time and date at job start Tue Mar 31 2020 19:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30889 * 125.89548 * 2 1 4 4 C 1.33653 * 109.77108 * 179.97438 * 3 2 1 5 5 N 1.39599 * 125.61227 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00090 * 180.02562 * 5 4 3 7 7 C 1.53049 * 109.36630 * 183.19026 * 6 5 4 8 8 N 1.46963 * 109.36171 * 301.59816 * 7 6 5 9 9 C 1.46896 * 111.00029 * 183.18886 * 8 7 6 10 10 C 1.52996 * 109.47255 * 169.99612 * 9 8 7 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.46506 * 120.00264 * 0.28128 * 13 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 16 16 C 1.50697 * 109.46949 * 90.00203 * 15 13 11 17 17 H 1.08004 * 120.00186 * 0.02562 * 16 15 13 18 18 C 1.37881 * 120.00081 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00103 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46927 * 59.99717 * 20 18 16 22 22 H 1.48496 * 109.47287 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47040 * 299.99940 * 20 18 16 24 24 C 1.46948 * 110.88098 * 59.31807 * 8 7 6 25 25 C 1.46961 * 110.99948 * 303.79869 * 5 4 3 26 26 N 1.31208 * 108.77600 * 0.22728 * 4 3 2 27 27 N 1.34347 * 125.89463 * 179.97438 * 2 1 3 28 28 H 0.97006 * 126.75500 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47152 * 90.00252 * 1 2 3 30 30 H 1.08994 * 109.47207 * 210.00480 * 1 2 3 31 31 H 1.09001 * 109.47241 * 330.00253 * 1 2 3 32 32 H 1.08999 * 109.49195 * 63.22059 * 6 5 4 33 33 H 1.09000 * 109.50588 * 303.16314 * 6 5 4 34 34 H 1.09001 * 109.49268 * 181.63068 * 7 6 5 35 35 H 1.09000 * 109.49067 * 61.56021 * 7 6 5 36 36 H 1.09004 * 109.47112 * 49.99605 * 9 8 7 37 37 H 1.09000 * 109.47386 * 289.99993 * 9 8 7 38 38 H 1.09004 * 109.47066 * 59.99965 * 10 9 8 39 39 H 1.08994 * 109.47405 * 299.99795 * 10 9 8 40 40 H 1.08998 * 109.46921 * 89.99095 * 14 13 11 41 41 H 1.08994 * 109.46996 * 209.99677 * 14 13 11 42 42 H 1.09001 * 109.46578 * 329.99540 * 14 13 11 43 43 H 1.09001 * 109.47567 * 210.00057 * 15 13 11 44 44 H 1.09005 * 109.47076 * 330.00563 * 15 13 11 45 45 H 0.96991 * 119.99957 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.48998 * 60.64771 * 24 8 7 47 47 H 1.09003 * 109.49079 * 180.70973 * 24 8 7 48 48 H 1.09000 * 109.48854 * 296.77905 * 25 5 4 49 49 H 1.09001 * 109.48551 * 56.82070 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0603 0.0000 4 6 3.5584 0.6891 0.0006 5 7 4.6544 1.5536 0.0002 6 6 5.9176 0.8026 0.0004 7 6 7.0906 1.7824 0.0804 8 7 7.0314 2.7074 -1.0600 9 6 8.1848 3.6171 -1.0604 10 6 8.2248 4.3894 -2.3805 11 6 9.4077 5.3232 -2.3806 12 8 10.1464 5.3663 -1.4197 13 7 9.6482 6.1059 -3.4511 14 6 8.7563 6.0536 -4.6122 15 6 10.8016 7.0092 -3.4537 16 6 11.9988 6.2936 -4.0242 17 1 11.9094 5.2685 -4.3525 18 6 13.2084 6.9474 -4.1272 19 7 13.3174 8.1955 -3.7270 20 14 14.6922 6.0605 -4.8351 21 1 14.3961 5.6327 -6.2259 22 1 15.8614 6.9761 -4.8377 23 1 14.9986 4.8679 -4.0050 24 6 5.7683 3.4584 -1.0603 25 6 4.5956 2.4782 -1.1406 26 7 3.6191 -0.6215 -0.0040 27 7 2.2946 -1.0883 0.0005 28 1 2.0054 -2.0143 0.0012 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 5.9936 0.2185 -0.9167 33 1 5.9432 0.1338 0.8607 34 1 8.0293 1.2291 0.0515 35 1 7.0297 2.3475 1.0105 36 1 9.1028 3.0400 -0.9492 37 1 8.0943 4.3190 -0.2314 38 1 7.3068 4.9666 -2.4917 39 1 8.3154 3.6876 -3.2095 40 1 7.9552 6.7822 -4.4880 41 1 9.3212 6.2850 -5.5151 42 1 8.3288 5.0545 -4.6971 43 1 10.5766 7.8841 -4.0637 44 1 11.0189 7.3240 -2.4330 45 1 14.1682 8.6555 -3.7998 46 1 5.6924 4.0425 -0.1432 47 1 5.7429 4.1270 -1.9208 48 1 4.6567 1.9128 -2.0704 49 1 3.6567 3.0313 -1.1123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931627817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:48 Heat of formation + Delta-G solvation = 48.685866 kcal Electronic energy + Delta-G solvation = -28663.856777 eV Core-core repulsion = 24662.214155 eV Total energy + Delta-G solvation = -4001.642622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.19400 -40.86538 -40.15739 -37.11348 -36.50025 -34.73256 -33.49996 -33.44108 -32.22676 -31.81528 -29.78491 -28.80113 -27.69941 -27.12292 -25.12588 -24.75164 -23.30745 -22.40804 -21.72761 -20.78228 -19.86943 -18.99363 -18.68616 -18.12075 -17.36142 -17.07749 -17.02973 -16.70922 -16.26571 -15.99442 -15.86606 -15.74791 -15.32270 -15.23057 -14.72491 -14.52350 -14.12257 -13.92993 -13.69874 -13.63648 -13.58670 -13.42584 -13.27587 -13.13006 -12.88161 -12.76891 -12.73051 -12.51779 -12.36470 -12.27613 -12.18303 -12.03325 -11.75230 -11.68734 -11.56638 -11.04761 -10.75055 -10.63519 -10.57757 -9.57564 -9.40163 -9.38337 -8.21487 -6.36554 0.56112 1.36852 1.41263 1.48580 1.55711 1.80679 1.87202 2.28841 2.34884 2.42470 2.89581 3.07700 3.44935 3.59380 3.77670 3.81791 3.91135 4.05646 4.13919 4.20167 4.30939 4.34407 4.35920 4.44353 4.55969 4.66036 4.73441 4.74965 4.75441 4.76213 4.84324 4.86996 4.95138 4.97468 5.01239 5.04217 5.09496 5.14525 5.16355 5.24715 5.55883 5.57545 5.86037 5.87044 6.00220 6.04613 6.07433 6.24940 6.70792 6.82236 7.09913 7.29289 7.51471 8.85208 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.030490 B = 0.001807 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.099127 B =15492.769628 C =15826.817424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.303 3.697 3 N -0.578 5.578 4 C 0.393 3.607 5 N -0.454 5.454 6 C 0.079 3.921 7 C 0.058 3.942 8 N -0.539 5.539 9 C 0.083 3.917 10 C -0.115 4.115 11 C 0.494 3.506 12 O -0.602 6.602 13 N -0.612 5.612 14 C 0.078 3.922 15 C 0.258 3.742 16 C -0.544 4.544 17 H 0.054 0.946 18 C 0.006 3.994 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.260 1.260 22 H -0.278 1.278 23 H -0.278 1.278 24 C 0.053 3.947 25 C 0.079 3.921 26 N -0.374 5.374 27 N -0.472 5.472 28 H 0.456 0.544 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.023 0.977 44 H -0.003 1.003 45 H 0.267 0.733 46 H 0.042 0.958 47 H 0.108 0.892 48 H 0.049 0.951 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.254 -19.434 3.797 36.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.025 3.975 3 N -0.311 5.311 4 C 0.023 3.977 5 N -0.178 5.178 6 C -0.049 4.049 7 C -0.070 4.070 8 N -0.264 5.264 9 C -0.046 4.046 10 C -0.155 4.155 11 C 0.284 3.716 12 O -0.484 6.484 13 N -0.343 5.343 14 C -0.064 4.064 15 C 0.136 3.864 16 C -0.583 4.583 17 H 0.072 0.928 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.792 3.208 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.204 1.204 24 C -0.075 4.075 25 C -0.048 4.048 26 N -0.211 5.211 27 N -0.194 5.194 28 H 0.305 0.695 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.114 0.886 43 H 0.041 0.959 44 H 0.015 0.985 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.126 0.874 48 H 0.067 0.933 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -29.164 -19.236 4.265 35.196 hybrid contribution 1.091 -0.440 0.100 1.180 sum -28.073 -19.676 4.365 34.558 Atomic orbital electron populations 1.20678 0.79833 1.06643 1.06218 1.25184 0.98190 0.81506 0.92615 1.70239 1.00487 1.31279 1.29111 1.22353 0.90669 0.87735 0.96950 1.59146 0.99550 1.15991 1.43095 1.22069 0.85616 0.94754 1.02468 1.22195 0.98405 0.94450 0.91942 1.62185 1.02120 1.19196 1.42866 1.21593 0.93200 0.94043 0.95731 1.21559 0.95928 0.97561 1.00455 1.21375 0.87097 0.81292 0.81886 1.90636 1.51714 1.69359 1.36658 1.48199 1.28102 1.40718 1.17249 1.21945 0.93255 1.03666 0.87522 1.18743 0.83374 0.88761 0.95484 1.21699 0.95867 0.98989 1.41711 0.92809 1.25883 1.01915 0.95716 0.95759 1.70047 1.26761 1.11955 1.48050 0.85462 0.77998 0.78091 0.79223 1.18422 1.20321 1.20354 1.22338 0.87438 0.95117 1.02622 1.22191 0.99841 0.93459 0.89271 1.78165 0.98915 1.11020 1.32957 1.47620 1.02752 1.10888 1.58100 0.69473 0.87089 0.86739 0.88161 0.92910 0.89377 0.88601 0.94065 0.91359 0.95264 0.86519 0.86565 0.91030 0.91769 0.88585 0.95903 0.98530 0.92422 0.94018 0.87364 0.93287 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.14 10.51 71.24 0.75 0.61 16 2 C 0.30 3.98 8.23 138.23 1.14 5.12 16 3 N -0.58 -12.39 10.96 -189.12 -2.07 -14.47 16 4 C 0.39 9.30 7.39 260.92 1.93 11.23 16 5 N -0.45 -10.41 4.80 -707.12 -3.39 -13.80 16 6 C 0.08 1.67 4.98 86.31 0.43 2.10 16 7 C 0.06 1.26 5.61 86.31 0.48 1.74 16 8 N -0.54 -12.20 4.71 -895.73 -4.22 -16.42 16 9 C 0.08 2.29 4.25 86.30 0.37 2.66 16 10 C -0.12 -3.14 4.19 29.85 0.12 -3.02 16 11 C 0.49 20.56 7.67 87.66 0.67 21.23 16 12 O -0.60 -31.57 15.56 -3.04 -0.05 -31.62 16 13 N -0.61 -26.13 2.86 -851.12 -2.43 -28.56 16 14 C 0.08 2.30 10.25 127.77 1.31 3.61 16 15 C 0.26 14.20 5.16 85.63 0.44 14.65 16 16 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 17 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 18 C 0.01 0.36 5.46 84.66 0.46 0.82 16 19 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 20 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 C 0.05 1.04 5.41 86.31 0.47 1.51 16 25 C 0.08 1.59 5.53 86.31 0.48 2.07 16 26 N -0.37 -8.19 11.83 -59.03 -0.70 -8.89 16 27 N -0.47 -6.20 7.43 -50.72 -0.38 -6.58 16 28 H 0.46 2.25 8.96 -213.10 -1.91 0.34 16 29 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.85 8.01 -2.39 -0.02 1.84 16 34 H 0.10 1.94 8.07 -2.39 -0.02 1.92 16 35 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 2.13 7.98 -2.38 -0.02 2.11 16 37 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 38 H 0.12 2.46 6.46 -2.38 -0.02 2.45 16 39 H 0.12 2.77 7.40 -2.39 -0.02 2.75 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 42 H 0.10 2.11 6.43 -2.39 -0.02 2.09 16 43 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 44 H 0.00 -0.22 7.42 -2.38 -0.02 -0.24 16 45 H 0.27 15.38 8.31 -92.72 -0.77 14.61 16 46 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.11 1.75 6.34 -2.39 -0.02 1.73 16 48 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.10 1.90 7.95 -2.39 -0.02 1.88 16 Total: -1.00 -85.25 396.82 -2.59 -87.84 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -0.95 Total: 9.02 kcal Atomic # 6 Polarization: 23.34 SS G_CDS: 9.29 Total: 32.63 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -12.91 Total: -145.45 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.05 Total: -31.62 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -85.25 -2.59 -87.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931627817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.529 kcal (2) G-P(sol) polarization free energy of solvation -85.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds