Wall clock time and date at job start Tue Mar 31 2020 21:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.52011 * 2 1 4 4 C 1.53184 * 109.50257 * 239.92276 * 2 1 3 5 5 N 1.46926 * 108.77920 * 185.41177 * 4 2 1 6 6 C 1.36936 * 120.62960 * 233.58383 * 5 4 2 7 7 H 1.07999 * 120.00324 * 27.68191 * 6 5 4 8 8 C 1.38809 * 119.99752 * 207.67841 * 6 5 4 9 9 N 1.31626 * 120.00360 * 17.37988 * 8 6 5 10 10 Si 1.86803 * 120.00115 * 197.38159 * 8 6 5 11 11 H 1.48497 * 109.46878 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47288 * 119.99888 * 10 8 6 13 13 H 1.48505 * 109.46898 * 240.00241 * 10 8 6 14 14 C 1.46925 * 118.73816 * 53.60652 * 5 4 2 15 15 C 1.53195 * 108.77530 * 306.39517 * 14 5 4 16 16 C 1.53040 * 109.49649 * 120.08004 * 2 1 3 17 17 H 1.08994 * 109.46116 * 61.29876 * 16 2 1 18 18 N 1.46502 * 109.46105 * 301.33705 * 16 2 1 19 19 C 1.34778 * 119.99916 * 154.93030 * 18 16 2 20 20 O 1.21535 * 119.99997 * 0.02562 * 19 18 16 21 21 C 1.48001 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.34183 * 126.69956 * 0.02562 * 21 19 18 23 23 N 1.28984 * 107.25487 * 179.97438 * 22 21 19 24 24 N 1.28726 * 108.98455 * 0.02562 * 23 22 21 25 25 C 1.46499 * 125.31843 * 179.97438 * 24 23 22 26 26 C 1.52999 * 109.47206 * 0.02562 * 25 24 23 27 27 C 1.53004 * 109.47163 * 120.02584 * 25 24 23 28 28 C 1.53002 * 109.47004 * 240.02312 * 25 24 23 29 29 N 1.28869 * 109.35843 * 359.72339 * 24 23 22 30 30 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47673 * 300.07680 * 1 2 3 32 32 H 1.09000 * 109.47201 * 60.08171 * 1 2 3 33 33 H 1.08997 * 109.59040 * 65.61864 * 4 2 1 34 34 H 1.09006 * 109.58286 * 305.20199 * 4 2 1 35 35 H 0.96994 * 119.99972 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.58952 * 66.17709 * 14 5 4 37 37 H 1.08997 * 109.58951 * 186.60515 * 14 5 4 38 38 H 1.09001 * 109.49975 * 174.58571 * 15 14 5 39 39 H 1.09006 * 109.49319 * 294.68458 * 15 14 5 40 40 H 0.96994 * 119.99968 * 334.93889 * 18 16 2 41 41 H 1.08998 * 109.47116 * 60.00459 * 26 25 24 42 42 H 1.09008 * 109.47111 * 179.97438 * 26 25 24 43 43 H 1.08992 * 109.47415 * 299.99912 * 26 25 24 44 44 H 1.08994 * 109.47027 * 59.99864 * 27 25 24 45 45 H 1.08994 * 109.46916 * 179.97438 * 27 25 24 46 46 H 1.09004 * 109.46657 * 299.99986 * 27 25 24 47 47 H 1.09000 * 109.46884 * 60.00448 * 28 25 24 48 48 H 1.09004 * 109.46814 * 179.97438 * 28 25 24 49 49 H 1.08994 * 109.47340 * 300.00230 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2495 5 7 3.5047 -0.8289 -1.1695 6 6 4.2936 -0.3791 -2.1944 7 1 3.9467 0.4206 -2.8320 8 6 5.5393 -0.9509 -2.4138 9 7 5.8282 -2.1216 -1.8862 10 14 6.8057 -0.0589 -3.4578 11 1 6.2383 1.2292 -3.9312 12 1 8.0207 0.2037 -2.6454 13 1 7.1646 -0.9007 -4.6273 14 6 4.1054 -1.4265 0.0308 15 6 3.5708 -0.6949 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 1.6967 -1.7572 1.2353 18 7 1.5265 -0.0529 2.4453 19 6 1.3971 -0.7386 3.5984 20 8 1.7075 -1.9127 3.6453 21 6 0.8770 -0.0617 4.8075 22 7 0.4957 1.2209 4.9070 23 7 0.1075 1.4115 6.1222 24 7 0.2304 0.3109 6.7785 25 6 -0.1081 0.1253 8.1917 26 6 -0.6312 1.4424 8.7681 27 6 -1.1869 -0.9520 8.3206 28 6 1.1405 -0.3085 8.9624 29 7 0.6926 -0.6034 5.9967 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.7638 -0.1579 -2.1388 34 1 1.6053 -1.7215 -1.2980 35 1 6.6985 -2.5213 -2.0398 36 1 3.8377 -2.4816 0.0868 37 1 5.1897 -1.3244 -0.0136 38 1 3.9334 -1.1896 2.1672 39 1 3.9159 0.3390 1.2541 40 1 1.2790 0.8842 2.4079 41 1 -1.5208 1.7514 8.2192 42 1 -0.8835 1.3042 9.8196 43 1 0.1372 2.2099 8.6764 44 1 -0.8141 -1.8904 7.9099 45 1 -1.4383 -1.0904 9.3721 46 1 -2.0763 -0.6430 7.7715 47 1 1.9090 0.4590 8.8706 48 1 0.8888 -0.4462 10.0140 49 1 1.5132 -1.2468 8.5517 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942063560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:51 Heat of formation + Delta-G solvation = 106.324141 kcal Electronic energy + Delta-G solvation = -29700.803260 eV Core-core repulsion = 25701.660021 eV Total energy + Delta-G solvation = -3999.143239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.61276 -39.81358 -38.09860 -37.57035 -34.63750 -33.71801 -32.94819 -32.36254 -31.15804 -29.85873 -28.20070 -28.13834 -26.19505 -25.72775 -24.73677 -24.34547 -22.19500 -21.12442 -20.98636 -20.46163 -19.48299 -17.93570 -17.59873 -17.04010 -16.58031 -15.99709 -15.05703 -14.87307 -14.76705 -14.49989 -14.39055 -14.11610 -13.84159 -13.54745 -13.48838 -13.27517 -13.08295 -12.95717 -12.78730 -12.64186 -12.44032 -12.43406 -12.12741 -12.05905 -11.72004 -11.46366 -11.29196 -11.24482 -11.19805 -11.06010 -10.82673 -10.64013 -10.54909 -10.35723 -10.20584 -10.19149 -9.97002 -9.77679 -9.51116 -8.76127 -8.41467 -6.67117 -5.76615 -3.19045 0.85936 1.35587 1.41850 2.85034 3.15394 3.39340 3.47241 3.49273 3.64314 3.92806 3.96425 4.04547 4.42463 4.51216 4.82611 4.84928 4.86197 5.01531 5.04958 5.06878 5.08271 5.17203 5.33117 5.34066 5.42377 5.45115 5.50589 5.54040 5.60961 5.62913 5.87347 5.90768 6.00859 6.12432 6.26834 6.27612 6.33239 6.47797 6.60491 6.69185 6.79089 6.87822 6.98251 7.38540 7.52484 7.70191 7.82305 8.01065 8.19308 8.46665 9.22779 9.86225 10.42470 11.31976 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.002308 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.327232 B =12130.612714 C =12494.442240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 H 0.074 0.926 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.252 4.252 7 H 0.067 0.933 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.174 3.826 15 C -0.149 4.149 16 C 0.158 3.842 17 H 0.087 0.913 18 N -0.696 5.696 19 C 0.611 3.389 20 O -0.508 6.508 21 C 0.131 3.869 22 N -0.258 5.258 23 N -0.058 5.058 24 N -0.127 5.127 25 C 0.176 3.824 26 C -0.153 4.153 27 C -0.160 4.160 28 C -0.161 4.161 29 N -0.246 5.246 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.021 0.979 35 H 0.253 0.747 36 H 0.022 0.978 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.405 0.595 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.924 6.162 22.847 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 H 0.093 0.907 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.382 4.382 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.047 3.953 15 C -0.190 4.190 16 C 0.055 3.945 17 H 0.105 0.895 18 N -0.347 5.347 19 C 0.390 3.610 20 O -0.380 6.380 21 C -0.153 4.153 22 N -0.132 5.132 23 N -0.051 5.051 24 N -0.042 5.042 25 C 0.096 3.904 26 C -0.211 4.211 27 C -0.219 4.219 28 C -0.219 4.219 29 N -0.099 5.099 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.240 0.760 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.758 5.649 23.184 28.058 hybrid contribution 0.777 0.532 -0.668 1.155 sum -13.982 6.181 22.516 27.215 Atomic orbital electron populations 1.21792 0.95680 1.01637 1.01072 1.21991 0.94643 1.00792 0.96112 0.90748 1.20899 0.85939 0.96673 0.93702 1.44124 0.99321 1.71421 1.16627 1.19212 0.98158 1.12310 1.08514 0.91543 1.25050 0.99939 0.95383 0.99313 1.70046 1.21847 1.14596 1.48035 0.86241 0.81737 0.79235 0.79659 1.20257 1.21590 1.21767 1.20774 0.99532 0.93117 0.81860 1.22622 0.93472 1.01883 1.00992 1.21233 0.94827 0.96973 0.81423 0.89519 1.46068 1.64419 1.14828 1.09390 1.16155 0.78775 0.85502 0.80569 1.90864 1.49001 1.14692 1.83403 1.25533 1.05045 0.89805 0.94957 1.76133 1.13702 1.14624 1.08768 1.78861 1.16337 1.10680 0.99179 1.50747 1.37387 1.03612 1.12419 1.21515 0.98024 0.99649 0.71212 1.22107 1.03066 0.93985 1.01937 1.22263 0.97155 0.98109 1.04357 1.22268 0.95314 1.03578 1.00774 1.75004 1.14798 1.18749 1.01388 0.92851 0.93312 0.92584 0.92227 0.96068 0.93641 0.96004 0.89091 0.92633 0.92339 0.75952 0.90502 0.89081 0.90470 0.90145 0.88952 0.91286 0.91247 0.88945 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.02 37.16 0.34 -1.63 16 2 C -0.11 -1.91 2.46 -90.50 -0.22 -2.13 16 3 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 4 C 0.16 3.16 5.80 -3.71 -0.02 3.14 16 5 N -0.59 -14.71 2.99 -172.33 -0.52 -15.23 16 6 C -0.25 -6.87 9.59 -15.06 -0.14 -7.01 16 7 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 8 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 9 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 10 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.17 4.21 5.31 -3.71 -0.02 4.19 16 15 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 16 C 0.16 2.78 1.88 -67.89 -0.13 2.65 16 17 H 0.09 1.67 7.57 -51.93 -0.39 1.28 16 18 N -0.70 -10.67 4.36 -54.66 -0.24 -10.91 16 19 C 0.61 10.23 7.80 -12.26 -0.10 10.13 16 20 O -0.51 -10.12 16.76 5.33 0.09 -10.03 16 21 C 0.13 1.98 8.14 -156.25 -1.27 0.71 16 22 N -0.26 -3.63 12.26 32.10 0.39 -3.23 16 23 N -0.06 -0.72 12.21 60.35 0.74 0.02 16 24 N -0.13 -1.40 3.72 0.52 0.00 -1.40 16 25 C 0.18 1.15 1.30 -131.82 -0.17 0.98 16 26 C -0.15 -0.67 7.90 37.16 0.29 -0.37 16 27 C -0.16 -0.83 8.66 37.16 0.32 -0.51 16 28 C -0.16 -0.87 8.67 37.16 0.32 -0.54 16 29 N -0.25 -3.44 11.85 32.11 0.38 -3.06 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.60 7.37 -51.93 -0.38 0.22 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 2.47 6.04 -51.93 -0.31 2.15 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.41 5.44 8.06 -40.82 -0.33 5.11 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.15 8.14 -51.92 -0.42 -0.28 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 396.76 15.07 5.98 5.98 Total: -1.00 -32.91 396.76 -6.76 -39.67 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -8.14 Total: 0.77 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.04 Total: 6.43 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 1.38 Total: -59.51 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.91 -6.76 -39.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942063560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.997 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds