Wall clock time and date at job start Tue Mar 31 2020 21:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.52011 * 2 1 4 4 C 1.53184 * 109.50257 * 239.92276 * 2 1 3 5 5 N 1.46926 * 108.77920 * 185.41177 * 4 2 1 6 6 C 1.36936 * 120.62960 * 233.58383 * 5 4 2 7 7 H 1.07999 * 120.00324 * 27.68191 * 6 5 4 8 8 C 1.38809 * 119.99752 * 207.67841 * 6 5 4 9 9 N 1.31626 * 120.00360 * 17.37988 * 8 6 5 10 10 Si 1.86803 * 120.00115 * 197.38159 * 8 6 5 11 11 H 1.48497 * 109.46878 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47288 * 119.99888 * 10 8 6 13 13 H 1.48505 * 109.46898 * 240.00241 * 10 8 6 14 14 C 1.46925 * 118.73816 * 53.60652 * 5 4 2 15 15 C 1.53195 * 108.77530 * 306.39517 * 14 5 4 16 16 C 1.53040 * 109.49649 * 120.08004 * 2 1 3 17 17 H 1.08994 * 109.46116 * 61.29876 * 16 2 1 18 18 N 1.46502 * 109.46105 * 301.33705 * 16 2 1 19 19 C 1.34778 * 119.99916 * 154.93030 * 18 16 2 20 20 O 1.21535 * 119.99997 * 0.02562 * 19 18 16 21 21 C 1.48001 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.34183 * 126.69956 * 0.02562 * 21 19 18 23 23 N 1.28984 * 107.25487 * 179.97438 * 22 21 19 24 24 N 1.28726 * 108.98455 * 0.02562 * 23 22 21 25 25 C 1.46499 * 125.31843 * 179.97438 * 24 23 22 26 26 C 1.52999 * 109.47206 * 0.02562 * 25 24 23 27 27 C 1.53004 * 109.47163 * 120.02584 * 25 24 23 28 28 C 1.53002 * 109.47004 * 240.02312 * 25 24 23 29 29 N 1.28869 * 109.35843 * 359.72339 * 24 23 22 30 30 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47673 * 300.07680 * 1 2 3 32 32 H 1.09000 * 109.47201 * 60.08171 * 1 2 3 33 33 H 1.08997 * 109.59040 * 65.61864 * 4 2 1 34 34 H 1.09006 * 109.58286 * 305.20199 * 4 2 1 35 35 H 0.96994 * 119.99972 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.58952 * 66.17709 * 14 5 4 37 37 H 1.08997 * 109.58951 * 186.60515 * 14 5 4 38 38 H 1.09001 * 109.49975 * 174.58571 * 15 14 5 39 39 H 1.09006 * 109.49319 * 294.68458 * 15 14 5 40 40 H 0.96994 * 119.99968 * 334.93889 * 18 16 2 41 41 H 1.08998 * 109.47116 * 60.00459 * 26 25 24 42 42 H 1.09008 * 109.47111 * 179.97438 * 26 25 24 43 43 H 1.08992 * 109.47415 * 299.99912 * 26 25 24 44 44 H 1.08994 * 109.47027 * 59.99864 * 27 25 24 45 45 H 1.08994 * 109.46916 * 179.97438 * 27 25 24 46 46 H 1.09004 * 109.46657 * 299.99986 * 27 25 24 47 47 H 1.09000 * 109.46884 * 60.00448 * 28 25 24 48 48 H 1.09004 * 109.46814 * 179.97438 * 28 25 24 49 49 H 1.08994 * 109.47340 * 300.00230 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2495 5 7 3.5047 -0.8289 -1.1695 6 6 4.2936 -0.3791 -2.1944 7 1 3.9467 0.4206 -2.8320 8 6 5.5393 -0.9509 -2.4138 9 7 5.8282 -2.1216 -1.8862 10 14 6.8057 -0.0589 -3.4578 11 1 6.2383 1.2292 -3.9312 12 1 8.0207 0.2037 -2.6454 13 1 7.1646 -0.9007 -4.6273 14 6 4.1054 -1.4265 0.0308 15 6 3.5708 -0.6949 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 1.6967 -1.7572 1.2353 18 7 1.5265 -0.0529 2.4453 19 6 1.3971 -0.7386 3.5984 20 8 1.7075 -1.9127 3.6453 21 6 0.8770 -0.0617 4.8075 22 7 0.4957 1.2209 4.9070 23 7 0.1075 1.4115 6.1222 24 7 0.2304 0.3109 6.7785 25 6 -0.1081 0.1253 8.1917 26 6 -0.6312 1.4424 8.7681 27 6 -1.1869 -0.9520 8.3206 28 6 1.1405 -0.3085 8.9624 29 7 0.6926 -0.6034 5.9967 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.7638 -0.1579 -2.1388 34 1 1.6053 -1.7215 -1.2980 35 1 6.6985 -2.5213 -2.0398 36 1 3.8377 -2.4816 0.0868 37 1 5.1897 -1.3244 -0.0136 38 1 3.9334 -1.1896 2.1672 39 1 3.9159 0.3390 1.2541 40 1 1.2790 0.8842 2.4079 41 1 -1.5208 1.7514 8.2192 42 1 -0.8835 1.3042 9.8196 43 1 0.1372 2.2099 8.6764 44 1 -0.8141 -1.8904 7.9099 45 1 -1.4383 -1.0904 9.3721 46 1 -2.0763 -0.6430 7.7715 47 1 1.9090 0.4590 8.8706 48 1 0.8888 -0.4462 10.0140 49 1 1.5132 -1.2468 8.5517 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942063560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:50 Heat of formation + Delta-G solvation = 84.167780 kcal Electronic energy + Delta-G solvation = -29701.764032 eV Core-core repulsion = 25701.660021 eV Total energy + Delta-G solvation = -4000.104011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -45.61552 -41.22642 -39.28400 -38.59945 -36.31842 -34.75638 -34.36008 -33.51434 -32.92473 -31.60790 -28.65252 -28.54327 -27.52624 -27.39741 -25.90770 -25.60961 -23.80446 -22.65598 -22.14632 -21.59119 -21.02968 -19.15761 -18.60630 -18.54565 -17.73385 -17.43965 -16.78782 -16.19372 -15.89886 -15.60023 -15.32752 -15.27473 -15.18286 -15.08632 -14.75064 -14.55313 -14.28905 -14.04020 -13.61997 -13.48526 -13.29453 -13.22945 -13.06459 -13.01426 -12.85132 -12.72812 -12.64722 -12.62568 -12.37252 -12.29883 -12.13020 -12.12143 -12.08537 -12.03070 -11.74606 -11.60493 -11.53686 -11.48443 -11.19311 -10.57408 -10.17397 -8.70734 -7.86512 -5.31955 -0.17824 0.23824 0.62718 1.47506 1.49640 1.60154 1.65174 1.86653 2.52400 2.76767 2.93877 3.29470 3.47997 3.55748 3.62438 3.65691 3.72546 3.97212 4.00238 4.15121 4.28866 4.36695 4.40986 4.52120 4.58246 4.60007 4.60437 4.67788 4.72000 4.72742 4.72977 4.85579 4.87822 5.00511 5.01993 5.07541 5.10628 5.13725 5.17128 5.22261 5.28349 5.37156 5.41594 5.52084 5.65338 5.70886 6.23079 6.39400 6.84623 7.02603 7.14254 7.85055 8.37558 9.20757 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.002308 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.327232 B =12130.612714 C =12494.442240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.082 0.918 4 C 0.151 3.849 5 N -0.609 5.609 6 C -0.258 4.258 7 H 0.074 0.926 8 C -0.054 4.054 9 N -0.937 5.937 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.293 1.293 13 H -0.294 1.294 14 C 0.183 3.817 15 C -0.135 4.135 16 C 0.170 3.830 17 H 0.069 0.931 18 N -0.681 5.681 19 C 0.615 3.385 20 O -0.546 6.546 21 C 0.116 3.884 22 N -0.265 5.265 23 N -0.056 5.056 24 N -0.109 5.109 25 C 0.159 3.841 26 C -0.149 4.149 27 C -0.157 4.157 28 C -0.159 4.159 29 N -0.259 5.259 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.014 0.986 35 H 0.249 0.751 36 H -0.006 1.006 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.418 0.582 41 H 0.071 0.929 42 H 0.127 0.873 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.130 0.870 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.130 0.870 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.849 8.332 24.671 31.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.100 0.900 4 C 0.025 3.975 5 N -0.332 5.332 6 C -0.388 4.388 7 H 0.091 0.909 8 C -0.249 4.249 9 N -0.584 5.584 10 Si 0.796 3.204 11 H -0.187 1.187 12 H -0.220 1.220 13 H -0.221 1.221 14 C 0.056 3.944 15 C -0.175 4.175 16 C 0.066 3.934 17 H 0.087 0.913 18 N -0.332 5.332 19 C 0.396 3.604 20 O -0.420 6.420 21 C -0.168 4.168 22 N -0.139 5.139 23 N -0.048 5.048 24 N -0.026 5.026 25 C 0.081 3.919 26 C -0.207 4.207 27 C -0.216 4.216 28 C -0.217 4.217 29 N -0.113 5.113 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.256 0.744 41 H 0.090 0.910 42 H 0.146 0.854 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.148 0.852 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.148 0.852 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.733 7.880 25.016 31.111 hybrid contribution 1.299 -0.168 -1.094 1.706 sum -15.435 7.712 23.922 29.495 Atomic orbital electron populations 1.21736 0.92750 1.02071 1.02840 1.21794 0.96877 1.00082 0.93317 0.90009 1.21081 0.83407 0.96968 0.96073 1.44365 1.01179 1.71379 1.16313 1.19583 0.98597 1.12047 1.08566 0.90858 1.25839 1.01919 0.96074 1.01118 1.70209 1.21959 1.16219 1.49985 0.85207 0.79012 0.78488 0.77741 1.18683 1.21969 1.22100 1.20478 0.97787 0.92244 0.83862 1.22377 0.95450 1.01211 0.98475 1.20907 0.92925 0.96653 0.82936 0.91268 1.45765 1.63785 1.15237 1.08404 1.16286 0.77980 0.85022 0.81131 1.90846 1.50665 1.16379 1.84110 1.25098 1.06569 0.90340 0.94786 1.76096 1.14063 1.14045 1.09684 1.78793 1.16205 1.11051 0.98766 1.51333 1.35288 1.02535 1.13428 1.22235 0.99133 1.01575 0.69006 1.22180 1.02386 0.92295 1.03852 1.22310 0.96145 0.96499 1.06613 1.22319 0.94515 1.02199 1.02652 1.74970 1.15146 1.19734 1.01439 0.93133 0.91547 0.90824 0.91368 0.96758 0.94189 0.98811 0.92386 0.93153 0.91823 0.74378 0.90998 0.85422 0.91170 0.91971 0.85212 0.91794 0.92008 0.85169 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.02 71.98 0.65 -2.72 16 2 C -0.10 -3.19 2.46 -10.72 -0.03 -3.22 16 3 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 4 C 0.15 6.09 5.80 86.36 0.50 6.59 16 5 N -0.61 -30.75 2.99 -699.12 -2.09 -32.84 16 6 C -0.26 -14.12 9.59 84.03 0.81 -13.32 16 7 H 0.07 3.85 7.89 -2.91 -0.02 3.83 16 8 C -0.05 -3.07 4.91 84.86 0.42 -2.66 16 9 N -0.94 -56.75 11.19 21.65 0.24 -56.51 16 10 Si 0.97 45.27 29.59 68.60 2.03 47.30 16 11 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 14 C 0.18 9.27 5.31 86.36 0.46 9.73 16 15 C -0.13 -5.52 5.65 30.67 0.17 -5.35 16 16 C 0.17 5.93 1.88 45.02 0.08 6.01 16 17 H 0.07 2.72 7.57 -2.39 -0.02 2.70 16 18 N -0.68 -20.31 4.36 -445.13 -1.94 -22.25 16 19 C 0.62 20.59 7.80 86.83 0.68 21.27 16 20 O -0.55 -22.24 16.76 -3.83 -0.06 -22.31 16 21 C 0.12 3.45 8.14 137.15 1.12 4.57 16 22 N -0.26 -7.16 12.26 -52.37 -0.64 -7.80 16 23 N -0.06 -1.31 12.21 37.02 0.45 -0.86 16 24 N -0.11 -2.28 3.72 -152.25 -0.57 -2.85 16 25 C 0.16 1.72 1.30 3.61 0.00 1.73 16 26 C -0.15 -0.86 7.90 71.98 0.57 -0.29 16 27 C -0.16 -1.26 8.66 71.98 0.62 -0.64 16 28 C -0.16 -1.37 8.67 71.98 0.62 -0.75 16 29 N -0.26 -7.14 11.85 -52.32 -0.62 -7.76 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.44 7.37 -2.39 -0.02 1.42 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 34 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 36 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.06 3.31 6.04 -2.39 -0.01 3.30 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.42 10.48 8.06 -92.71 -0.75 9.73 16 41 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.13 -0.18 8.14 -2.38 -0.02 -0.19 16 43 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.13 0.13 8.14 -2.38 -0.02 0.11 16 49 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -74.29 396.76 3.67 -70.62 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.20 Total: 14.31 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.68 Total: 20.95 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -5.17 Total: -130.87 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.06 Total: -22.31 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -74.29 3.67 -70.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942063560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.785 kcal (2) G-P(sol) polarization free energy of solvation -74.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds