Wall clock time and date at job start Tue Mar 31 2020 21:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.49806 * 2 1 4 4 C 1.53188 * 109.49783 * 239.89775 * 2 1 3 5 5 N 1.46928 * 108.77829 * 185.41265 * 4 2 1 6 6 C 1.36934 * 120.63316 * 233.61548 * 5 4 2 7 7 H 1.07997 * 120.00307 * 152.79548 * 6 5 4 8 8 C 1.38814 * 119.99802 * 332.79023 * 6 5 4 9 9 N 1.31618 * 119.99773 * 159.75408 * 8 6 5 10 10 Si 1.86796 * 120.00046 * 339.75524 * 8 6 5 11 11 H 1.48501 * 109.47216 * 94.90180 * 10 8 6 12 12 H 1.48505 * 109.47022 * 214.89568 * 10 8 6 13 13 H 1.48500 * 109.47384 * 334.89424 * 10 8 6 14 14 C 1.46932 * 118.73555 * 53.60818 * 5 4 2 15 15 C 1.53188 * 108.77733 * 306.39566 * 14 5 4 16 16 C 1.53042 * 109.31462 * 54.63296 * 15 14 5 17 17 H 1.09000 * 109.45337 * 178.62280 * 16 15 14 18 18 N 1.46507 * 109.46020 * 58.65322 * 16 15 14 19 19 C 1.34774 * 119.99786 * 84.93012 * 18 16 15 20 20 O 1.21537 * 120.00027 * 0.02562 * 19 18 16 21 21 C 1.48000 * 120.00074 * 179.97438 * 19 18 16 22 22 N 1.34194 * 126.69763 * 359.69070 * 21 19 18 23 23 N 1.28987 * 107.25296 * 179.83458 * 22 21 19 24 24 N 1.28721 * 108.98621 * 0.43320 * 23 22 21 25 25 C 1.46498 * 125.32002 * 179.68486 * 24 23 22 26 26 C 1.53001 * 109.47366 * 240.04225 * 25 24 23 27 27 C 1.52999 * 109.47279 * 0.04679 * 25 24 23 28 28 C 1.53008 * 109.47054 * 120.04448 * 25 24 23 29 29 N 1.28872 * 109.36189 * 359.72738 * 24 23 22 30 30 H 1.09000 * 109.47452 * 299.93549 * 1 2 3 31 31 H 1.09003 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47205 * 59.94153 * 1 2 3 33 33 H 1.08997 * 109.59326 * 305.20722 * 4 2 1 34 34 H 1.09008 * 109.58537 * 65.62682 * 4 2 1 35 35 H 0.96999 * 119.99974 * 179.97438 * 9 8 6 36 36 H 1.08990 * 109.58677 * 186.60528 * 14 5 4 37 37 H 1.09009 * 109.58125 * 66.18451 * 14 5 4 38 38 H 1.08997 * 109.49707 * 294.68614 * 15 14 5 39 39 H 1.08997 * 109.52305 * 174.60023 * 15 14 5 40 40 H 0.96995 * 120.00094 * 264.93409 * 18 16 15 41 41 H 1.09001 * 109.46855 * 60.00003 * 26 25 24 42 42 H 1.09000 * 109.47271 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47177 * 300.00515 * 26 25 24 44 44 H 1.09007 * 109.47045 * 59.99431 * 27 25 24 45 45 H 1.09000 * 109.47425 * 179.97438 * 27 25 24 46 46 H 1.09001 * 109.46808 * 299.99916 * 27 25 24 47 47 H 1.08997 * 109.46890 * 59.99852 * 28 25 24 48 48 H 1.08991 * 109.47244 * 180.02562 * 28 25 24 49 49 H 1.09007 * 109.46919 * 300.00354 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 3.5046 -0.8295 -1.1693 6 6 4.2936 -0.3796 -2.1941 7 1 5.3015 -0.0473 -1.9938 8 6 3.7979 -0.3507 -3.4904 9 7 4.3622 0.4227 -4.3936 10 14 2.3300 -1.4093 -3.9529 11 1 1.0852 -0.6082 -3.8350 12 1 2.4828 -1.8834 -5.3519 13 1 2.2551 -2.5779 -3.0396 14 6 4.1053 -1.4267 0.0313 15 6 3.5709 -0.6947 1.2663 16 6 2.0408 -0.7227 1.2486 17 1 1.6583 -0.2237 2.1390 18 7 1.5783 -2.1127 1.2315 19 6 1.4502 -2.7946 2.3869 20 8 1.7179 -2.2562 3.4431 21 6 0.9824 -4.1986 2.3697 22 7 0.6452 -4.9183 1.2885 23 7 0.2975 -6.0897 1.7018 24 7 0.3944 -6.1268 2.9848 25 6 0.0802 -7.2853 3.8247 26 6 -1.0353 -6.9171 4.8051 27 6 -0.3802 -8.4462 2.9409 28 6 1.3282 -7.7026 4.6055 29 7 0.8100 -4.9854 3.4152 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5147 -0.8895 33 1 1.6052 -1.7220 -1.2975 34 1 1.7638 -0.1586 -2.1388 35 1 4.0161 0.4427 -5.2995 36 1 5.1895 -1.3247 -0.0132 37 1 3.8376 -2.4819 0.0876 38 1 3.9159 0.3392 1.2540 39 1 3.9334 -1.1886 2.1678 40 1 1.3643 -2.5423 0.3886 41 1 -1.9243 -6.6198 4.2488 42 1 -1.2693 -7.7792 5.4296 43 1 -0.7072 -6.0901 5.4347 44 1 0.4146 -8.7085 2.2424 45 1 -0.6135 -9.3083 3.5657 46 1 -1.2692 -8.1489 2.3846 47 1 1.6562 -6.8756 5.2351 48 1 1.0946 -8.5648 5.2300 49 1 2.1229 -7.9649 3.9071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942063561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:56 Heat of formation + Delta-G solvation = 114.983674 kcal Electronic energy + Delta-G solvation = -30497.646903 eV Core-core repulsion = 26498.879170 eV Total energy + Delta-G solvation = -3998.767733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.58866 -40.07667 -38.17041 -37.75686 -34.48215 -33.68836 -32.89394 -32.25561 -31.83529 -30.24079 -28.18191 -28.13093 -26.42883 -25.73712 -24.82982 -24.62387 -22.57559 -21.28511 -20.94844 -20.85072 -18.90464 -18.25610 -17.58090 -17.08911 -16.76664 -15.85507 -15.18863 -15.11610 -14.81675 -14.66077 -14.34133 -14.19483 -14.06079 -13.66564 -13.50463 -13.39045 -13.30227 -13.06155 -12.93556 -12.74830 -12.42108 -12.41241 -12.20237 -12.07987 -11.93234 -11.69614 -11.52619 -11.35093 -11.21752 -11.19591 -11.17077 -10.68060 -10.53731 -10.52752 -10.28014 -10.20718 -9.98861 -9.68758 -9.44460 -8.88392 -8.60362 -6.96604 -5.93408 -3.29546 0.86966 1.37310 1.43698 2.83411 3.11740 3.33084 3.51068 3.53288 3.66136 3.94368 3.96742 4.05897 4.42842 4.53993 4.84510 4.85577 4.87323 4.92822 4.99471 5.02793 5.06974 5.08706 5.14575 5.30218 5.30914 5.36635 5.45200 5.47881 5.51142 5.64144 5.66268 5.87584 5.89802 5.91465 5.96876 6.05534 6.17208 6.26937 6.37660 6.40179 6.60218 6.62768 6.69177 6.70670 6.93212 7.47443 7.96691 8.00873 8.15440 8.34211 8.94704 9.73036 10.10134 11.22489 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.003123 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.004772 B = 8963.240680 C = 9565.890031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 H 0.093 0.907 4 C 0.130 3.870 5 N -0.605 5.605 6 C -0.258 4.258 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.909 5.909 10 Si 0.879 3.121 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.149 3.851 15 C -0.148 4.148 16 C 0.160 3.840 17 H 0.085 0.915 18 N -0.690 5.690 19 C 0.615 3.385 20 O -0.516 6.516 21 C 0.129 3.871 22 N -0.254 5.254 23 N -0.056 5.056 24 N -0.127 5.127 25 C 0.176 3.824 26 C -0.160 4.160 27 C -0.154 4.154 28 C -0.161 4.161 29 N -0.247 5.247 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.262 0.738 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.411 0.589 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 -16.022 18.710 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 H 0.111 0.889 4 C 0.004 3.996 5 N -0.328 5.328 6 C -0.387 4.387 7 H 0.104 0.896 8 C -0.176 4.176 9 N -0.552 5.552 10 Si 0.709 3.291 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.192 1.192 14 C 0.023 3.977 15 C -0.188 4.188 16 C 0.057 3.943 17 H 0.103 0.897 18 N -0.342 5.342 19 C 0.395 3.605 20 O -0.388 6.388 21 C -0.155 4.155 22 N -0.128 5.128 23 N -0.048 5.048 24 N -0.042 5.042 25 C 0.096 3.904 26 C -0.218 4.218 27 C -0.212 4.212 28 C -0.219 4.219 29 N -0.100 5.100 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.249 0.751 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.110 0.890 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.739 -16.111 19.051 27.573 hybrid contribution -0.776 -0.429 -0.697 1.128 sum -12.515 -16.540 18.353 27.695 Atomic orbital electron populations 1.21814 0.95458 1.01586 1.01615 1.21979 0.95006 1.01184 0.95739 0.88912 1.21393 0.85125 0.96924 0.96130 1.44358 1.00482 1.70167 1.17771 1.18923 0.98444 1.36145 0.85146 0.89620 1.25274 0.98006 0.98657 0.95651 1.69832 1.43097 1.38146 1.04086 0.87002 0.82646 0.82394 0.77009 1.21617 1.23186 1.19236 1.20897 0.97283 0.94026 0.85462 1.22409 0.94340 1.02497 0.99543 1.21079 0.94879 0.79339 0.99015 0.89709 1.45948 1.65561 1.14406 1.08325 1.16091 0.78390 0.81065 0.84983 1.90823 1.49948 1.67576 1.30470 1.25438 1.05515 0.99086 0.85495 1.76209 1.14024 0.97437 1.25154 1.78904 1.16117 1.15274 0.94543 1.50757 1.38375 1.10045 1.05021 1.21512 0.98210 0.80583 0.90093 1.22259 0.96705 1.04161 0.98709 1.22113 1.03559 0.95550 0.99944 1.22265 0.95317 1.03564 1.00756 1.74970 1.15418 0.93145 1.26440 0.92842 0.93012 0.92315 0.95845 0.90536 0.92799 0.91776 0.96044 0.90482 0.91932 0.75142 0.91292 0.88962 0.90204 0.90412 0.89088 0.90471 0.90186 0.88971 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.05 37.16 0.34 -1.78 16 2 C -0.12 -2.00 2.67 -90.50 -0.24 -2.24 16 3 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 4 C 0.13 2.72 3.18 -3.71 -0.01 2.71 16 5 N -0.60 -14.02 2.77 -172.32 -0.48 -14.49 16 6 C -0.26 -7.13 10.04 -15.06 -0.15 -7.28 16 7 H 0.09 2.53 8.05 -52.49 -0.42 2.11 16 8 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 9 N -0.91 -27.76 13.97 55.49 0.78 -26.99 16 10 Si 0.88 22.21 24.35 -169.99 -4.14 18.07 16 11 H -0.29 -6.99 6.70 56.52 0.38 -6.61 16 12 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 13 H -0.27 -6.62 6.45 56.52 0.36 -6.25 16 14 C 0.15 2.96 6.26 -3.71 -0.02 2.94 16 15 C -0.15 -2.51 5.77 -26.61 -0.15 -2.67 16 16 C 0.16 2.58 2.21 -67.88 -0.15 2.43 16 17 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 18 N -0.69 -11.04 3.59 -54.65 -0.20 -11.24 16 19 C 0.62 10.17 7.80 -12.26 -0.10 10.08 16 20 O -0.52 -9.52 16.76 5.33 0.09 -9.43 16 21 C 0.13 2.02 8.14 -156.24 -1.27 0.75 16 22 N -0.25 -3.95 12.26 32.10 0.39 -3.56 16 23 N -0.06 -0.75 12.21 60.35 0.74 -0.02 16 24 N -0.13 -1.48 3.72 0.53 0.00 -1.48 16 25 C 0.18 1.22 1.30 -131.82 -0.17 1.05 16 26 C -0.16 -0.85 8.66 37.16 0.32 -0.53 16 27 C -0.15 -0.77 7.90 37.16 0.29 -0.48 16 28 C -0.16 -0.90 8.66 37.16 0.32 -0.58 16 29 N -0.25 -3.48 11.85 32.11 0.38 -3.10 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.73 7.53 -51.93 -0.39 0.34 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.02 0.49 5.48 -51.93 -0.28 0.21 16 34 H 0.08 1.77 4.50 -51.92 -0.23 1.54 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 36 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 37 H 0.02 0.43 7.74 -51.92 -0.40 0.03 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.41 6.73 6.48 -40.82 -0.26 6.46 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -33.40 386.21 -5.62 -39.02 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.92 Total: 2.42 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.09 Total: 4.97 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 1.61 Total: -60.87 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.40 -5.62 -39.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942063561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.004 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds