Wall clock time and date at job start Tue Mar 31 2020 21:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.49806 * 2 1 4 4 C 1.53188 * 109.49783 * 239.89775 * 2 1 3 5 5 N 1.46928 * 108.77829 * 185.41265 * 4 2 1 6 6 C 1.36934 * 120.63316 * 233.61548 * 5 4 2 7 7 H 1.07997 * 120.00307 * 152.79548 * 6 5 4 8 8 C 1.38814 * 119.99802 * 332.79023 * 6 5 4 9 9 N 1.31618 * 119.99773 * 159.75408 * 8 6 5 10 10 Si 1.86796 * 120.00046 * 339.75524 * 8 6 5 11 11 H 1.48501 * 109.47216 * 94.90180 * 10 8 6 12 12 H 1.48505 * 109.47022 * 214.89568 * 10 8 6 13 13 H 1.48500 * 109.47384 * 334.89424 * 10 8 6 14 14 C 1.46932 * 118.73555 * 53.60818 * 5 4 2 15 15 C 1.53188 * 108.77733 * 306.39566 * 14 5 4 16 16 C 1.53042 * 109.31462 * 54.63296 * 15 14 5 17 17 H 1.09000 * 109.45337 * 178.62280 * 16 15 14 18 18 N 1.46507 * 109.46020 * 58.65322 * 16 15 14 19 19 C 1.34774 * 119.99786 * 84.93012 * 18 16 15 20 20 O 1.21537 * 120.00027 * 0.02562 * 19 18 16 21 21 C 1.48000 * 120.00074 * 179.97438 * 19 18 16 22 22 N 1.34194 * 126.69763 * 359.69070 * 21 19 18 23 23 N 1.28987 * 107.25296 * 179.83458 * 22 21 19 24 24 N 1.28721 * 108.98621 * 0.43320 * 23 22 21 25 25 C 1.46498 * 125.32002 * 179.68486 * 24 23 22 26 26 C 1.53001 * 109.47366 * 240.04225 * 25 24 23 27 27 C 1.52999 * 109.47279 * 0.04679 * 25 24 23 28 28 C 1.53008 * 109.47054 * 120.04448 * 25 24 23 29 29 N 1.28872 * 109.36189 * 359.72738 * 24 23 22 30 30 H 1.09000 * 109.47452 * 299.93549 * 1 2 3 31 31 H 1.09003 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47205 * 59.94153 * 1 2 3 33 33 H 1.08997 * 109.59326 * 305.20722 * 4 2 1 34 34 H 1.09008 * 109.58537 * 65.62682 * 4 2 1 35 35 H 0.96999 * 119.99974 * 179.97438 * 9 8 6 36 36 H 1.08990 * 109.58677 * 186.60528 * 14 5 4 37 37 H 1.09009 * 109.58125 * 66.18451 * 14 5 4 38 38 H 1.08997 * 109.49707 * 294.68614 * 15 14 5 39 39 H 1.08997 * 109.52305 * 174.60023 * 15 14 5 40 40 H 0.96995 * 120.00094 * 264.93409 * 18 16 15 41 41 H 1.09001 * 109.46855 * 60.00003 * 26 25 24 42 42 H 1.09000 * 109.47271 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47177 * 300.00515 * 26 25 24 44 44 H 1.09007 * 109.47045 * 59.99431 * 27 25 24 45 45 H 1.09000 * 109.47425 * 179.97438 * 27 25 24 46 46 H 1.09001 * 109.46808 * 299.99916 * 27 25 24 47 47 H 1.08997 * 109.46890 * 59.99852 * 28 25 24 48 48 H 1.08991 * 109.47244 * 180.02562 * 28 25 24 49 49 H 1.09007 * 109.46919 * 300.00354 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 3.5046 -0.8295 -1.1693 6 6 4.2936 -0.3796 -2.1941 7 1 5.3015 -0.0473 -1.9938 8 6 3.7979 -0.3507 -3.4904 9 7 4.3622 0.4227 -4.3936 10 14 2.3300 -1.4093 -3.9529 11 1 1.0852 -0.6082 -3.8350 12 1 2.4828 -1.8834 -5.3519 13 1 2.2551 -2.5779 -3.0396 14 6 4.1053 -1.4267 0.0313 15 6 3.5709 -0.6947 1.2663 16 6 2.0408 -0.7227 1.2486 17 1 1.6583 -0.2237 2.1390 18 7 1.5783 -2.1127 1.2315 19 6 1.4502 -2.7946 2.3869 20 8 1.7179 -2.2562 3.4431 21 6 0.9824 -4.1986 2.3697 22 7 0.6452 -4.9183 1.2885 23 7 0.2975 -6.0897 1.7018 24 7 0.3944 -6.1268 2.9848 25 6 0.0802 -7.2853 3.8247 26 6 -1.0353 -6.9171 4.8051 27 6 -0.3802 -8.4462 2.9409 28 6 1.3282 -7.7026 4.6055 29 7 0.8100 -4.9854 3.4152 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5147 -0.8895 33 1 1.6052 -1.7220 -1.2975 34 1 1.7638 -0.1586 -2.1388 35 1 4.0161 0.4427 -5.2995 36 1 5.1895 -1.3247 -0.0132 37 1 3.8376 -2.4819 0.0876 38 1 3.9159 0.3392 1.2540 39 1 3.9334 -1.1886 2.1678 40 1 1.3643 -2.5423 0.3886 41 1 -1.9243 -6.6198 4.2488 42 1 -1.2693 -7.7792 5.4296 43 1 -0.7072 -6.0901 5.4347 44 1 0.4146 -8.7085 2.2424 45 1 -0.6135 -9.3083 3.5657 46 1 -1.2692 -8.1489 2.3846 47 1 1.6562 -6.8756 5.2351 48 1 1.0946 -8.5648 5.2300 49 1 2.1229 -7.9649 3.9071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942063561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:54 Heat of formation + Delta-G solvation = 91.618899 kcal Electronic energy + Delta-G solvation = -30498.660076 eV Core-core repulsion = 26498.879170 eV Total energy + Delta-G solvation = -3999.780906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.62065 -41.43287 -39.43471 -38.61181 -36.13470 -34.74189 -34.18060 -33.66099 -33.43515 -31.88166 -28.66290 -28.54485 -27.73380 -27.39585 -26.17307 -25.64174 -24.19484 -22.65627 -22.33536 -21.76942 -20.40137 -19.40527 -18.76027 -18.57754 -17.77552 -17.38234 -16.84748 -16.42680 -15.99091 -15.72599 -15.32674 -15.27917 -15.24772 -15.05908 -15.01367 -14.75263 -14.40898 -14.05891 -13.92075 -13.56848 -13.48973 -13.29423 -13.24122 -13.11595 -12.99600 -12.86019 -12.66171 -12.64625 -12.37916 -12.32437 -12.13117 -12.12955 -12.10228 -11.97191 -11.69819 -11.54720 -11.50330 -11.49321 -11.29178 -10.65503 -10.22851 -8.92494 -8.14728 -5.46848 -0.18372 0.22995 0.63170 1.30810 1.44086 1.51838 1.67224 1.87146 2.42625 2.77590 2.92784 3.06371 3.32438 3.47408 3.54557 3.61689 3.67249 3.91074 3.97052 4.02320 4.24906 4.27510 4.38802 4.40889 4.51740 4.52904 4.56074 4.58794 4.59435 4.65432 4.71178 4.71718 4.83140 4.86228 4.98085 5.00480 5.01067 5.05315 5.10185 5.16505 5.20361 5.21538 5.27225 5.31027 5.47871 5.88009 6.13704 6.19157 6.78238 6.91811 7.02240 7.62707 8.02804 9.05040 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.003123 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.004772 B = 8963.240680 C = 9565.890031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.090 0.910 4 C 0.126 3.874 5 N -0.616 5.616 6 C -0.246 4.246 7 H 0.053 0.947 8 C -0.033 4.033 9 N -0.957 5.957 10 Si 0.940 3.060 11 H -0.271 1.271 12 H -0.314 1.314 13 H -0.259 1.259 14 C 0.148 3.852 15 C -0.138 4.138 16 C 0.166 3.834 17 H 0.100 0.900 18 N -0.685 5.685 19 C 0.622 3.378 20 O -0.537 6.537 21 C 0.112 3.888 22 N -0.274 5.274 23 N -0.060 5.060 24 N -0.108 5.108 25 C 0.158 3.842 26 C -0.156 4.156 27 C -0.151 4.151 28 C -0.158 4.158 29 N -0.253 5.253 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.055 0.945 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.410 0.590 41 H 0.061 0.939 42 H 0.130 0.870 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.128 0.872 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.130 0.870 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.131 -18.164 21.038 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.108 0.892 4 C 0.001 3.999 5 N -0.340 5.340 6 C -0.375 4.375 7 H 0.071 0.929 8 C -0.228 4.228 9 N -0.603 5.603 10 Si 0.769 3.231 11 H -0.197 1.197 12 H -0.244 1.244 13 H -0.183 1.183 14 C 0.023 3.977 15 C -0.177 4.177 16 C 0.063 3.937 17 H 0.118 0.882 18 N -0.337 5.337 19 C 0.402 3.598 20 O -0.411 6.411 21 C -0.171 4.171 22 N -0.148 5.148 23 N -0.052 5.052 24 N -0.025 5.025 25 C 0.080 3.920 26 C -0.214 4.214 27 C -0.209 4.209 28 C -0.216 4.216 29 N -0.107 5.107 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.248 0.752 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.147 0.853 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.148 0.852 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.118 -18.276 21.413 31.494 hybrid contribution 0.008 0.127 -1.281 1.287 sum -14.111 -18.149 20.133 30.558 Atomic orbital electron populations 1.21783 0.93102 1.02276 1.02829 1.21834 0.96878 1.00368 0.93798 0.89208 1.21441 0.83624 0.97440 0.97352 1.44443 1.01375 1.70598 1.17576 1.18852 0.97687 1.34555 0.86424 0.92932 1.25866 1.01319 0.99938 0.95679 1.69959 1.45612 1.40260 1.04475 0.86006 0.80250 0.80916 0.75905 1.19735 1.24350 1.18309 1.20978 0.96872 0.94413 0.85397 1.22285 0.95137 1.02186 0.98132 1.21026 0.94015 0.79558 0.99144 0.88212 1.45883 1.65352 1.14269 1.08227 1.16107 0.77768 0.81328 0.84590 1.90806 1.51013 1.68219 1.31095 1.25254 1.06818 0.99032 0.86045 1.76165 1.14889 0.98098 1.25685 1.78831 1.16285 1.14604 0.95471 1.51367 1.36099 1.10213 1.04862 1.22246 0.99544 0.79711 0.90501 1.22305 0.95504 1.05317 0.98314 1.22184 1.02717 0.95860 1.00095 1.22316 0.94307 1.04446 1.00525 1.74935 1.15578 0.93874 1.26289 0.90672 0.92583 0.92134 0.95095 0.92702 0.93004 0.92693 0.95644 0.90328 0.90979 0.75216 0.91946 0.85184 0.91626 0.91428 0.85341 0.91180 0.91639 0.85151 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.05 71.98 0.65 -3.04 16 2 C -0.11 -3.44 2.67 -10.72 -0.03 -3.47 16 3 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 4 C 0.13 5.13 3.18 86.36 0.27 5.40 16 5 N -0.62 -28.48 2.77 -699.09 -1.94 -30.42 16 6 C -0.25 -13.87 10.04 84.03 0.84 -13.03 16 7 H 0.05 3.25 8.05 -2.91 -0.02 3.23 16 8 C -0.03 -1.95 5.24 84.86 0.44 -1.50 16 9 N -0.96 -60.26 13.97 21.65 0.30 -59.96 16 10 Si 0.94 46.40 24.35 68.60 1.67 48.07 16 11 H -0.27 -12.47 6.70 99.48 0.67 -11.81 16 12 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 13 H -0.26 -12.23 6.45 99.48 0.64 -11.59 16 14 C 0.15 5.83 6.26 86.36 0.54 6.37 16 15 C -0.14 -4.49 5.77 30.67 0.18 -4.31 16 16 C 0.17 5.01 2.21 45.02 0.10 5.11 16 17 H 0.10 2.83 7.58 -2.39 -0.02 2.81 16 18 N -0.69 -20.78 3.59 -445.11 -1.60 -22.38 16 19 C 0.62 19.74 7.80 86.83 0.68 20.42 16 20 O -0.54 -19.08 16.76 -3.83 -0.06 -19.15 16 21 C 0.11 3.41 8.14 137.15 1.12 4.53 16 22 N -0.27 -8.31 12.26 -52.36 -0.64 -8.95 16 23 N -0.06 -1.55 12.21 37.02 0.45 -1.10 16 24 N -0.11 -2.37 3.72 -152.25 -0.57 -2.94 16 25 C 0.16 1.81 1.30 3.61 0.00 1.82 16 26 C -0.16 -1.24 8.66 71.98 0.62 -0.61 16 27 C -0.15 -1.09 7.90 71.98 0.57 -0.53 16 28 C -0.16 -1.37 8.66 71.98 0.62 -0.75 16 29 N -0.25 -6.88 11.85 -52.31 -0.62 -7.50 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.42 7.53 -2.39 -0.02 1.40 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 1.23 5.48 -2.39 -0.01 1.22 16 34 H 0.05 2.48 4.50 -2.38 -0.01 2.47 16 35 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 37 H 0.03 0.99 7.74 -2.38 -0.02 0.97 16 38 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.41 12.76 6.48 -92.71 -0.60 12.15 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -74.18 386.21 3.86 -70.32 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.25 Total: 17.60 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.62 Total: 16.41 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -4.61 Total: -133.26 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.06 Total: -19.15 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.67 Total: 48.07 kcal Total: -74.18 3.86 -70.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942063561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.943 kcal (2) G-P(sol) polarization free energy of solvation -74.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds