Wall clock time and date at job start Tue Mar 31 2020 21:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.49748 * 2 1 4 4 C 1.53183 * 109.50040 * 120.10221 * 2 1 3 5 5 N 1.46931 * 108.77679 * 174.58818 * 4 2 1 6 6 C 1.36932 * 120.63092 * 126.41227 * 5 4 2 7 7 H 1.08006 * 119.99567 * 207.67181 * 6 5 4 8 8 C 1.38811 * 120.00321 * 27.67948 * 6 5 4 9 9 N 1.31621 * 120.00052 * 17.35007 * 8 6 5 10 10 Si 1.86802 * 119.99977 * 197.35607 * 8 6 5 11 11 H 1.48501 * 109.47018 * 59.99719 * 10 8 6 12 12 H 1.48500 * 109.47011 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47258 * 299.99744 * 10 8 6 14 14 C 1.46928 * 118.73656 * 306.38750 * 5 4 2 15 15 C 1.53195 * 108.76450 * 53.61992 * 14 5 4 16 16 C 1.53044 * 109.49547 * 239.94242 * 2 1 3 17 17 H 1.08998 * 109.45862 * 298.68641 * 16 2 1 18 18 N 1.46503 * 109.46524 * 58.66059 * 16 2 1 19 19 C 1.34774 * 120.00073 * 205.03238 * 18 16 2 20 20 O 1.21534 * 119.99880 * 359.97438 * 19 18 16 21 21 C 1.48005 * 119.99554 * 180.02562 * 19 18 16 22 22 N 1.34181 * 126.70322 * 359.97438 * 21 19 18 23 23 N 1.28975 * 107.25502 * 180.02562 * 22 21 19 24 24 N 1.28717 * 108.99075 * 0.02562 * 23 22 21 25 25 C 1.46505 * 125.32569 * 180.02562 * 24 23 22 26 26 C 1.52994 * 109.46700 * 0.02562 * 25 24 23 27 27 C 1.52998 * 109.46996 * 120.02479 * 25 24 23 28 28 C 1.52997 * 109.47014 * 240.02249 * 25 24 23 29 29 N 1.28873 * 109.35618 * 0.02562 * 24 23 22 30 30 H 1.09001 * 109.46573 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46988 * 300.05940 * 1 2 3 32 32 H 1.09000 * 109.47177 * 60.06262 * 1 2 3 33 33 H 1.09005 * 109.58817 * 294.37221 * 4 2 1 34 34 H 1.08998 * 109.59185 * 54.65640 * 4 2 1 35 35 H 0.96997 * 119.99730 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.58562 * 173.39699 * 14 5 4 37 37 H 1.09003 * 109.58721 * 293.68103 * 14 5 4 38 38 H 1.08997 * 109.48822 * 185.40325 * 15 14 5 39 39 H 1.08994 * 109.51148 * 65.29621 * 15 14 5 40 40 H 0.96996 * 119.99336 * 25.02531 * 18 16 2 41 41 H 1.09000 * 109.47613 * 59.99740 * 26 25 24 42 42 H 1.09001 * 109.47330 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.47169 * 299.99634 * 26 25 24 44 44 H 1.08993 * 109.47928 * 60.00264 * 27 25 24 45 45 H 1.09001 * 109.46795 * 180.02562 * 27 25 24 46 46 H 1.09009 * 109.46946 * 299.99812 * 27 25 24 47 47 H 1.09000 * 109.47276 * 60.00108 * 28 25 24 48 48 H 1.09006 * 109.47123 * 179.97438 * 28 25 24 49 49 H 1.09002 * 109.47404 * 299.99816 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7242 1.2492 5 7 3.5047 -0.8294 1.1691 6 6 4.2936 -0.3800 2.1941 7 1 5.2990 -0.0405 1.9928 8 6 3.8014 -0.3608 3.4919 9 7 2.7378 -1.0710 3.8029 10 14 4.6484 0.6731 4.7969 11 1 4.6318 2.1000 4.3857 12 1 3.9327 0.5225 6.0893 13 1 6.0536 0.2193 4.9530 14 6 4.1054 -1.4266 -0.0314 15 6 3.5709 -0.6942 -1.2662 16 6 2.0408 -0.7226 -1.2487 17 1 1.6969 -1.7568 -1.2359 18 7 1.5265 -0.0521 -2.4454 19 6 1.3978 -0.7371 -3.5989 20 8 1.7089 -1.9110 -3.6464 21 6 0.8788 -0.0595 -4.8080 22 7 0.4979 1.2233 -4.9072 23 7 0.1106 1.4145 -6.1225 24 7 0.2326 0.3141 -6.7791 25 6 -0.1051 0.1291 -8.1926 26 6 -0.6253 1.4473 -8.7693 27 6 1.1432 -0.3070 -8.9623 28 6 -1.1858 -0.9462 -8.3222 29 7 0.6984 -0.5996 -5.9986 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5129 -0.8905 33 1 1.7639 -0.1586 2.1388 34 1 1.6034 -1.7211 1.2987 35 1 2.3937 -1.0573 4.7097 36 1 5.1896 -1.3245 0.0131 37 1 3.8397 -2.4824 -0.0864 38 1 3.9335 -1.1884 -2.1675 39 1 3.9156 0.3397 -1.2538 40 1 1.2785 0.8849 -2.4075 41 1 0.1446 2.2133 -8.6769 42 1 -0.8771 1.3096 -9.8208 43 1 -1.5146 1.7579 -8.2209 44 1 1.5139 -1.2460 -8.5515 45 1 0.8920 -0.4442 -10.0141 46 1 1.9131 0.4591 -8.8699 47 1 -2.0751 -0.6355 -7.7738 48 1 -1.4374 -1.0835 -9.3739 49 1 -0.8151 -1.8853 -7.9113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942063562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:00 Heat of formation + Delta-G solvation = 106.085770 kcal Electronic energy + Delta-G solvation = -29707.700242 eV Core-core repulsion = 25708.546666 eV Total energy + Delta-G solvation = -3999.153575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.62291 -39.82077 -38.10285 -37.55535 -34.62698 -33.71535 -32.87913 -32.09586 -31.82026 -29.46005 -28.20430 -28.14977 -26.17502 -25.78163 -24.74693 -24.37531 -22.23989 -21.13367 -20.86691 -20.46222 -19.46141 -17.95009 -17.60779 -17.08230 -16.56287 -16.01833 -15.06979 -14.88923 -14.77900 -14.54214 -14.34862 -14.10574 -13.79226 -13.60328 -13.49402 -13.15019 -13.07191 -12.96407 -12.87163 -12.54459 -12.44656 -12.44423 -12.11473 -12.04087 -11.72835 -11.46177 -11.29621 -11.25595 -11.20804 -11.05497 -10.74886 -10.63296 -10.56670 -10.38027 -10.29050 -10.09263 -10.00025 -9.71832 -9.49945 -8.77958 -8.43860 -6.67600 -5.77799 -3.19513 0.84865 1.34690 1.40942 2.84416 3.13520 3.40365 3.46070 3.47414 3.63485 3.91861 3.95732 4.03657 4.41590 4.51207 4.81937 4.84016 4.84949 5.00636 5.04142 5.05921 5.09323 5.23522 5.32692 5.34909 5.43938 5.47231 5.49285 5.56443 5.62089 5.71415 5.86570 5.88629 6.10819 6.12952 6.23584 6.36061 6.45465 6.51331 6.59192 6.70923 6.80066 6.89655 7.00549 7.34971 7.49476 7.66988 7.81391 8.00282 8.17702 8.46091 9.22277 9.85484 10.42246 11.31016 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.030523 B = 0.002226 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.132466 B =12574.505657 C =12721.975782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 H 0.070 0.930 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.903 5.903 10 Si 0.902 3.098 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.148 3.852 15 C -0.142 4.142 16 C 0.158 3.842 17 H 0.087 0.913 18 N -0.695 5.695 19 C 0.611 3.389 20 O -0.511 6.511 21 C 0.130 3.870 22 N -0.257 5.257 23 N -0.057 5.057 24 N -0.127 5.127 25 C 0.177 3.823 26 C -0.153 4.153 27 C -0.161 4.161 28 C -0.161 4.161 29 N -0.247 5.247 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.022 0.978 35 H 0.255 0.745 36 H 0.057 0.943 37 H 0.022 0.978 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.406 0.594 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.901 4.130 -26.513 28.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 H 0.089 0.911 4 C 0.054 3.946 5 N -0.315 5.315 6 C -0.382 4.382 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.732 3.268 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.021 3.979 15 C -0.182 4.182 16 C 0.055 3.945 17 H 0.105 0.895 18 N -0.346 5.346 19 C 0.390 3.610 20 O -0.383 6.383 21 C -0.154 4.154 22 N -0.132 5.132 23 N -0.050 5.050 24 N -0.042 5.042 25 C 0.096 3.904 26 C -0.211 4.211 27 C -0.219 4.219 28 C -0.219 4.219 29 N -0.100 5.100 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.242 0.758 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.956 3.688 -26.706 28.408 hybrid contribution 0.408 0.662 0.900 1.189 sum -8.549 4.350 -25.806 27.531 Atomic orbital electron populations 1.21749 0.95774 1.01535 1.00847 1.22192 0.94842 1.00822 0.96416 0.91110 1.20817 0.83028 0.97157 0.93569 1.44103 1.01748 1.69375 1.16284 1.19144 0.97764 1.35489 0.85793 0.91657 1.25037 0.98568 0.99049 0.96975 1.70017 1.25622 1.40124 1.18929 0.86371 0.78930 0.80558 0.80918 1.21042 1.21666 1.20904 1.20876 0.96752 0.94297 0.85996 1.22428 0.94389 1.01687 0.99713 1.21244 0.94117 0.97301 0.81839 0.89510 1.46091 1.64244 1.14945 1.09303 1.16167 0.78735 0.85480 0.80580 1.90851 1.49217 1.14694 1.83492 1.25531 1.05089 0.89863 0.94900 1.76140 1.13692 1.14594 1.08732 1.78862 1.16330 1.10645 0.99183 1.50750 1.37317 1.03657 1.12450 1.21512 0.98021 0.99662 0.71196 1.22108 1.03108 0.93955 1.01941 1.22264 0.95318 1.03533 1.00789 1.22264 0.97152 0.98119 1.04364 1.74999 1.14783 1.18791 1.01414 0.92959 0.92432 0.93725 0.88849 0.95996 0.93549 0.92445 0.96040 0.92512 0.91990 0.75840 0.90473 0.89079 0.90479 0.90151 0.88950 0.91263 0.91267 0.88947 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.03 37.16 0.34 -1.90 16 2 C -0.12 -2.23 2.46 -90.50 -0.22 -2.45 16 3 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.18 4.20 4.59 -3.71 -0.02 4.18 16 5 N -0.59 -14.73 2.99 -172.32 -0.52 -15.24 16 6 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 7 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 8 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 9 N -0.90 -25.92 11.19 55.49 0.62 -25.29 16 10 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 15 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 16 C 0.16 2.77 1.88 -67.88 -0.13 2.64 16 17 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 18 N -0.70 -10.67 4.36 -54.65 -0.24 -10.91 16 19 C 0.61 10.09 7.80 -12.26 -0.10 9.99 16 20 O -0.51 -9.92 16.76 5.34 0.09 -9.83 16 21 C 0.13 1.95 8.14 -156.25 -1.27 0.68 16 22 N -0.26 -3.62 12.26 32.10 0.39 -3.22 16 23 N -0.06 -0.71 12.21 60.35 0.74 0.03 16 24 N -0.13 -1.39 3.72 0.52 0.00 -1.38 16 25 C 0.18 1.13 1.30 -131.82 -0.17 0.95 16 26 C -0.15 -0.66 7.90 37.15 0.29 -0.36 16 27 C -0.16 -0.82 8.66 37.16 0.32 -0.50 16 28 C -0.16 -0.82 8.66 37.16 0.32 -0.50 16 29 N -0.25 -3.40 11.85 32.11 0.38 -3.02 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.62 7.36 -51.93 -0.38 0.24 16 33 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.41 5.57 8.06 -40.82 -0.33 5.24 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -32.41 396.75 -6.76 -39.17 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.14 Total: 1.09 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.04 Total: 6.10 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 1.38 Total: -59.05 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.41 -6.76 -39.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942063562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.257 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds