Wall clock time and date at job start Tue Mar 31 2020 21:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.49748 * 2 1 4 4 C 1.53183 * 109.50040 * 120.10221 * 2 1 3 5 5 N 1.46931 * 108.77679 * 174.58818 * 4 2 1 6 6 C 1.36932 * 120.63092 * 126.41227 * 5 4 2 7 7 H 1.08006 * 119.99567 * 207.67181 * 6 5 4 8 8 C 1.38811 * 120.00321 * 27.67948 * 6 5 4 9 9 N 1.31621 * 120.00052 * 17.35007 * 8 6 5 10 10 Si 1.86802 * 119.99977 * 197.35607 * 8 6 5 11 11 H 1.48501 * 109.47018 * 59.99719 * 10 8 6 12 12 H 1.48500 * 109.47011 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47258 * 299.99744 * 10 8 6 14 14 C 1.46928 * 118.73656 * 306.38750 * 5 4 2 15 15 C 1.53195 * 108.76450 * 53.61992 * 14 5 4 16 16 C 1.53044 * 109.49547 * 239.94242 * 2 1 3 17 17 H 1.08998 * 109.45862 * 298.68641 * 16 2 1 18 18 N 1.46503 * 109.46524 * 58.66059 * 16 2 1 19 19 C 1.34774 * 120.00073 * 205.03238 * 18 16 2 20 20 O 1.21534 * 119.99880 * 359.97438 * 19 18 16 21 21 C 1.48005 * 119.99554 * 180.02562 * 19 18 16 22 22 N 1.34181 * 126.70322 * 359.97438 * 21 19 18 23 23 N 1.28975 * 107.25502 * 180.02562 * 22 21 19 24 24 N 1.28717 * 108.99075 * 0.02562 * 23 22 21 25 25 C 1.46505 * 125.32569 * 180.02562 * 24 23 22 26 26 C 1.52994 * 109.46700 * 0.02562 * 25 24 23 27 27 C 1.52998 * 109.46996 * 120.02479 * 25 24 23 28 28 C 1.52997 * 109.47014 * 240.02249 * 25 24 23 29 29 N 1.28873 * 109.35618 * 0.02562 * 24 23 22 30 30 H 1.09001 * 109.46573 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46988 * 300.05940 * 1 2 3 32 32 H 1.09000 * 109.47177 * 60.06262 * 1 2 3 33 33 H 1.09005 * 109.58817 * 294.37221 * 4 2 1 34 34 H 1.08998 * 109.59185 * 54.65640 * 4 2 1 35 35 H 0.96997 * 119.99730 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.58562 * 173.39699 * 14 5 4 37 37 H 1.09003 * 109.58721 * 293.68103 * 14 5 4 38 38 H 1.08997 * 109.48822 * 185.40325 * 15 14 5 39 39 H 1.08994 * 109.51148 * 65.29621 * 15 14 5 40 40 H 0.96996 * 119.99336 * 25.02531 * 18 16 2 41 41 H 1.09000 * 109.47613 * 59.99740 * 26 25 24 42 42 H 1.09001 * 109.47330 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.47169 * 299.99634 * 26 25 24 44 44 H 1.08993 * 109.47928 * 60.00264 * 27 25 24 45 45 H 1.09001 * 109.46795 * 180.02562 * 27 25 24 46 46 H 1.09009 * 109.46946 * 299.99812 * 27 25 24 47 47 H 1.09000 * 109.47276 * 60.00108 * 28 25 24 48 48 H 1.09006 * 109.47123 * 179.97438 * 28 25 24 49 49 H 1.09002 * 109.47404 * 299.99816 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7242 1.2492 5 7 3.5047 -0.8294 1.1691 6 6 4.2936 -0.3800 2.1941 7 1 5.2990 -0.0405 1.9928 8 6 3.8014 -0.3608 3.4919 9 7 2.7378 -1.0710 3.8029 10 14 4.6484 0.6731 4.7969 11 1 4.6318 2.1000 4.3857 12 1 3.9327 0.5225 6.0893 13 1 6.0536 0.2193 4.9530 14 6 4.1054 -1.4266 -0.0314 15 6 3.5709 -0.6942 -1.2662 16 6 2.0408 -0.7226 -1.2487 17 1 1.6969 -1.7568 -1.2359 18 7 1.5265 -0.0521 -2.4454 19 6 1.3978 -0.7371 -3.5989 20 8 1.7089 -1.9110 -3.6464 21 6 0.8788 -0.0595 -4.8080 22 7 0.4979 1.2233 -4.9072 23 7 0.1106 1.4145 -6.1225 24 7 0.2326 0.3141 -6.7791 25 6 -0.1051 0.1291 -8.1926 26 6 -0.6253 1.4473 -8.7693 27 6 1.1432 -0.3070 -8.9623 28 6 -1.1858 -0.9462 -8.3222 29 7 0.6984 -0.5996 -5.9986 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5129 -0.8905 33 1 1.7639 -0.1586 2.1388 34 1 1.6034 -1.7211 1.2987 35 1 2.3937 -1.0573 4.7097 36 1 5.1896 -1.3245 0.0131 37 1 3.8397 -2.4824 -0.0864 38 1 3.9335 -1.1884 -2.1675 39 1 3.9156 0.3397 -1.2538 40 1 1.2785 0.8849 -2.4075 41 1 0.1446 2.2133 -8.6769 42 1 -0.8771 1.3096 -9.8208 43 1 -1.5146 1.7579 -8.2209 44 1 1.5139 -1.2460 -8.5515 45 1 0.8920 -0.4442 -10.0141 46 1 1.9131 0.4591 -8.8699 47 1 -2.0751 -0.6355 -7.7738 48 1 -1.4374 -1.0835 -9.3739 49 1 -0.8151 -1.8853 -7.9113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942063562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:59 Heat of formation + Delta-G solvation = 84.664584 kcal Electronic energy + Delta-G solvation = -29708.629134 eV Core-core repulsion = 25708.546666 eV Total energy + Delta-G solvation = -4000.082468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.61095 -41.21802 -39.27292 -38.59464 -36.27800 -34.72643 -34.21760 -33.54577 -33.36404 -31.21777 -28.64482 -28.53682 -27.56397 -27.46790 -25.93227 -25.60906 -23.85130 -22.51777 -22.13631 -21.57461 -21.03038 -19.24029 -18.56816 -18.53855 -17.71191 -17.45561 -16.75777 -16.21766 -15.87762 -15.53433 -15.35743 -15.27099 -15.17445 -15.07949 -14.70377 -14.59814 -14.26204 -14.03215 -13.56261 -13.47675 -13.28637 -13.22556 -13.20417 -12.91044 -12.86912 -12.84598 -12.64204 -12.55128 -12.44348 -12.36563 -12.12544 -12.11512 -12.06472 -11.86372 -11.77882 -11.68222 -11.48587 -11.44936 -11.20177 -10.53725 -10.17538 -8.69844 -7.86040 -5.31025 -0.17209 0.24487 0.63335 1.49799 1.51789 1.58708 1.65959 1.87189 2.53377 2.77547 2.94299 3.29271 3.48553 3.56233 3.63093 3.66049 3.74172 3.96604 4.01046 4.19237 4.29353 4.33959 4.41466 4.52726 4.57267 4.58495 4.60481 4.64457 4.72136 4.73051 4.73354 4.83591 4.93204 4.97273 5.02455 5.05614 5.11189 5.11434 5.17648 5.22509 5.30738 5.34379 5.38848 5.51646 5.67243 5.74740 6.23635 6.40673 6.83938 7.03295 7.16025 7.85519 8.38224 9.20787 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.030523 B = 0.002226 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.132466 B =12574.505657 C =12721.975782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 H 0.075 0.925 4 C 0.188 3.812 5 N -0.610 5.610 6 C -0.264 4.264 7 H 0.067 0.933 8 C -0.049 4.049 9 N -0.933 5.933 10 Si 0.967 3.033 11 H -0.277 1.277 12 H -0.295 1.295 13 H -0.277 1.277 14 C 0.145 3.855 15 C -0.128 4.128 16 C 0.169 3.831 17 H 0.070 0.930 18 N -0.682 5.682 19 C 0.617 3.383 20 O -0.544 6.544 21 C 0.115 3.885 22 N -0.266 5.266 23 N -0.057 5.057 24 N -0.109 5.109 25 C 0.159 3.841 26 C -0.150 4.150 27 C -0.158 4.158 28 C -0.158 4.158 29 N -0.258 5.258 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.065 0.935 34 H -0.003 1.003 35 H 0.251 0.749 36 H 0.060 0.940 37 H 0.012 0.988 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.418 0.582 41 H 0.070 0.930 42 H 0.127 0.873 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.130 0.870 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.130 0.870 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 5.657 -29.244 31.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 H 0.094 0.906 4 C 0.062 3.938 5 N -0.333 5.333 6 C -0.394 4.394 7 H 0.085 0.915 8 C -0.244 4.244 9 N -0.579 5.579 10 Si 0.795 3.205 11 H -0.203 1.203 12 H -0.221 1.221 13 H -0.203 1.203 14 C 0.019 3.981 15 C -0.169 4.169 16 C 0.066 3.934 17 H 0.088 0.912 18 N -0.333 5.333 19 C 0.398 3.602 20 O -0.418 6.418 21 C -0.168 4.168 22 N -0.140 5.140 23 N -0.049 5.049 24 N -0.026 5.026 25 C 0.081 3.919 26 C -0.208 4.208 27 C -0.216 4.216 28 C -0.216 4.216 29 N -0.112 5.112 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.015 0.985 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.255 0.745 41 H 0.089 0.911 42 H 0.146 0.854 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.148 0.852 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.148 0.852 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.491 5.254 -29.472 31.405 hybrid contribution 0.554 0.133 1.581 1.681 sum -8.937 5.388 -27.891 29.779 Atomic orbital electron populations 1.21699 0.93646 1.01713 1.02208 1.21923 0.96509 1.00100 0.94269 0.90641 1.20612 0.82488 0.95863 0.94835 1.44368 1.02291 1.69863 1.16773 1.19467 0.98152 1.35109 0.86631 0.91492 1.25784 0.99481 1.00233 0.98918 1.70174 1.27134 1.41594 1.19021 0.85348 0.77920 0.79137 0.78066 1.20275 1.22078 1.20316 1.20961 0.96982 0.94013 0.86125 1.22242 0.94783 1.01568 0.98261 1.20903 0.93619 0.96501 0.82426 0.91215 1.45792 1.63822 1.15268 1.08392 1.16246 0.77980 0.85002 0.81022 1.90833 1.50707 1.16158 1.84129 1.25119 1.06581 0.90347 0.94781 1.76105 1.14120 1.14147 1.09666 1.78796 1.16247 1.11068 0.98784 1.51339 1.35198 1.02579 1.13466 1.22231 0.99192 1.01509 0.69005 1.22180 1.02393 0.92341 1.03841 1.22313 0.94445 1.02235 1.02620 1.22313 0.96119 0.96567 1.06605 1.74963 1.15096 1.19701 1.01414 0.93414 0.92179 0.91212 0.91707 0.98516 0.94017 0.92162 0.97016 0.91704 0.91322 0.74494 0.91137 0.85423 0.91116 0.91893 0.85205 0.91950 0.91923 0.85207 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.03 71.98 0.65 -3.50 16 2 C -0.11 -3.90 2.46 -10.72 -0.03 -3.93 16 3 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 4 C 0.19 8.99 4.59 86.36 0.40 9.39 16 5 N -0.61 -30.87 2.99 -699.09 -2.09 -32.97 16 6 C -0.26 -14.50 9.58 84.03 0.81 -13.69 16 7 H 0.07 3.59 7.89 -2.91 -0.02 3.56 16 8 C -0.05 -2.71 4.91 84.86 0.42 -2.29 16 9 N -0.93 -55.02 11.19 21.65 0.24 -54.78 16 10 Si 0.97 44.76 29.59 68.60 2.03 46.79 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 14 C 0.15 6.30 6.52 86.36 0.56 6.86 16 15 C -0.13 -4.66 5.65 30.68 0.17 -4.49 16 16 C 0.17 5.90 1.88 45.02 0.08 5.98 16 17 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 18 N -0.68 -20.26 4.36 -445.11 -1.94 -22.20 16 19 C 0.62 20.07 7.80 86.83 0.68 20.75 16 20 O -0.54 -21.21 16.76 -3.82 -0.06 -21.27 16 21 C 0.12 3.38 8.14 137.15 1.12 4.49 16 22 N -0.27 -7.19 12.26 -52.37 -0.64 -7.84 16 23 N -0.06 -1.32 12.21 37.02 0.45 -0.87 16 24 N -0.11 -2.24 3.72 -152.26 -0.57 -2.80 16 25 C 0.16 1.66 1.30 3.60 0.00 1.67 16 26 C -0.15 -0.84 7.90 71.98 0.57 -0.27 16 27 C -0.16 -1.24 8.66 71.98 0.62 -0.62 16 28 C -0.16 -1.23 8.66 71.98 0.62 -0.61 16 29 N -0.26 -6.92 11.85 -52.32 -0.62 -7.54 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.80 7.36 -2.39 -0.02 1.79 16 33 H 0.06 3.47 6.04 -2.38 -0.01 3.45 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.42 10.74 8.06 -92.71 -0.75 9.99 16 41 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.13 0.03 8.14 -2.38 -0.02 0.01 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -71.92 396.75 3.67 -68.25 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.20 Total: 15.49 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 6.68 Total: 19.75 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -5.17 Total: -129.00 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.06 Total: -21.27 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -71.92 3.67 -68.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942063562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.911 kcal (2) G-P(sol) polarization free energy of solvation -71.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds