Wall clock time and date at job start Tue Mar 31 2020 21:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47300 * 2 1 4 4 C 1.50695 * 109.47206 * 120.00369 * 2 1 3 5 5 N 1.31074 * 126.65957 * 299.96071 * 4 2 1 6 6 N 1.28843 * 107.99245 * 180.02562 * 5 4 2 7 7 N 1.28747 * 109.39502 * 359.72846 * 6 5 4 8 8 N 1.29015 * 108.80474 * 0.44045 * 7 6 5 9 9 C 1.46500 * 126.43271 * 179.83489 * 8 7 6 10 10 C 1.50701 * 109.47419 * 269.68975 * 9 8 7 11 11 O 1.21286 * 119.99671 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00482 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00228 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.45941 * 325.03036 * 13 12 10 15 15 C 1.53045 * 109.45877 * 85.00264 * 13 12 10 16 16 C 1.53188 * 109.34069 * 58.62668 * 15 13 12 17 17 N 1.47001 * 108.74101 * 54.61987 * 16 15 13 18 18 C 1.36937 * 120.61504 * 126.38839 * 17 16 15 19 19 H 1.07997 * 119.99643 * 332.62854 * 18 17 16 20 20 C 1.38803 * 120.00066 * 152.63695 * 18 17 16 21 21 N 1.31620 * 120.00336 * 159.31798 * 20 18 17 22 22 Si 1.86800 * 120.00061 * 339.31858 * 20 18 17 23 23 H 1.48496 * 109.47488 * 92.98162 * 22 20 18 24 24 H 1.48504 * 109.47112 * 212.98353 * 22 20 18 25 25 H 1.48505 * 109.47310 * 332.98100 * 22 20 18 26 26 C 1.46930 * 118.75400 * 306.41498 * 17 16 15 27 27 C 1.53043 * 109.44894 * 205.06360 * 13 12 10 28 28 H 1.09002 * 109.49651 * 181.40335 * 27 13 12 29 29 C 1.52995 * 109.49881 * 61.30475 * 27 13 12 30 30 H 1.09001 * 109.46905 * 60.00229 * 1 2 3 31 31 H 1.09001 * 109.47268 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47139 * 299.99805 * 1 2 3 33 33 H 1.09008 * 109.46862 * 240.00357 * 2 1 3 34 34 H 1.08998 * 109.46761 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46954 * 299.99741 * 3 2 1 36 36 H 1.08994 * 109.46734 * 60.00460 * 3 2 1 37 37 H 1.08997 * 109.47396 * 149.69062 * 9 8 7 38 38 H 1.09001 * 109.47322 * 29.68919 * 9 8 7 39 39 H 0.97001 * 120.00229 * 0.02562 * 12 10 9 40 40 H 1.08998 * 109.49426 * 178.59540 * 15 13 12 41 41 H 1.09000 * 109.49629 * 298.65481 * 15 13 12 42 42 H 1.08999 * 109.58983 * 174.43800 * 16 15 13 43 43 H 1.08999 * 109.58725 * 294.86741 * 16 15 13 44 44 H 0.96992 * 120.00173 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.58375 * 293.81771 * 26 17 16 46 46 H 1.08996 * 109.70463 * 173.46277 * 26 17 16 47 47 H 1.08998 * 109.47648 * 59.99560 * 29 27 13 48 48 H 1.09000 * 109.47325 * 180.02562 * 29 27 13 49 49 H 1.09006 * 109.46892 * 299.99927 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7981 -0.3781 2.4764 6 7 2.3997 -1.2283 3.2349 7 7 3.0068 -2.0978 2.5050 8 7 2.8090 -1.8093 1.2632 9 6 3.3271 -2.5435 0.1061 10 6 4.6650 -1.9752 -0.2914 11 8 5.1393 -1.0485 0.3308 12 7 5.3350 -2.4974 -1.3377 13 6 6.6354 -1.9446 -1.7245 14 1 6.6370 -0.8678 -1.5553 15 6 7.7363 -2.5946 -0.8833 16 6 7.7088 -4.1113 -1.0963 17 7 7.8065 -4.3878 -2.5368 18 6 8.7696 -5.2322 -3.0211 19 1 9.6996 -5.3541 -2.4858 20 6 8.5506 -5.9313 -4.2001 21 7 9.5706 -6.4084 -4.8815 22 14 6.8082 -6.1951 -4.8196 23 1 6.4484 -5.1069 -5.7638 24 1 6.7235 -7.5035 -5.5169 25 1 5.8673 -6.1848 -3.6707 26 6 6.8518 -3.7407 -3.4470 27 6 6.8891 -2.2282 -3.2069 28 1 7.8673 -1.8391 -3.4895 29 6 5.8065 -1.5505 -4.0491 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 2.6301 -2.4483 -0.7264 38 1 3.4419 -3.5960 0.3653 39 1 4.9559 -3.2388 -1.8352 40 1 8.7065 -2.2020 -1.1878 41 1 7.5683 -2.3720 0.1704 42 1 8.5516 -4.5685 -0.5778 43 1 6.7746 -4.5179 -0.7090 44 1 9.4175 -6.8972 -5.7052 45 1 5.8477 -4.1170 -3.2512 46 1 7.1267 -3.9536 -4.4800 47 1 5.8315 -0.4746 -3.8758 48 1 5.9873 -1.7531 -5.1047 49 1 4.8288 -1.9413 -3.7668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943483750.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:10 Heat of formation + Delta-G solvation = 99.736940 kcal Electronic energy + Delta-G solvation = -30734.211426 eV Core-core repulsion = 26734.782545 eV Total energy + Delta-G solvation = -3999.428881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.36081 -40.44430 -38.29986 -36.49795 -35.56722 -34.62455 -32.77148 -32.10771 -31.66628 -30.66175 -29.07317 -27.62616 -26.37569 -25.42113 -24.65724 -23.72887 -22.70645 -21.51480 -21.10916 -20.74906 -19.19419 -18.30151 -17.93076 -16.97433 -16.56355 -16.12268 -15.91469 -15.47535 -15.13657 -14.91639 -14.52649 -14.20131 -14.00331 -13.78677 -13.66347 -13.52449 -13.44508 -12.98172 -12.92996 -12.61462 -12.38152 -12.35532 -12.09998 -12.03764 -11.76045 -11.70445 -11.58075 -11.52562 -11.51193 -11.37451 -11.16125 -10.85376 -10.69360 -10.42296 -10.28671 -10.21918 -10.01992 -9.85362 -9.61750 -9.11760 -8.74633 -7.12955 -6.07111 -3.44165 1.00369 1.58129 2.11217 2.17736 2.88618 3.15910 3.31095 3.36451 3.56502 3.84241 4.10360 4.21858 4.38204 4.40027 4.54120 4.66528 4.75084 4.81662 4.84290 5.11810 5.13366 5.19180 5.21445 5.30982 5.33027 5.41490 5.46266 5.47722 5.53518 5.66668 5.70750 5.76180 5.77224 5.83496 5.85668 5.89191 5.97676 6.05512 6.20478 6.22754 6.40320 6.46219 6.50712 6.54512 6.75085 7.21897 7.82176 7.85076 8.20920 8.46657 8.80151 9.58204 9.94037 11.08881 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.003079 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.259987 B = 9091.323888 C = 9395.573908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.201 3.799 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.083 5.083 8 N -0.292 5.292 9 C 0.089 3.911 10 C 0.501 3.499 11 O -0.523 6.523 12 N -0.704 5.704 13 C 0.162 3.838 14 H 0.082 0.918 15 C -0.148 4.148 16 C 0.151 3.849 17 N -0.604 5.604 18 C -0.262 4.262 19 H 0.086 0.914 20 C 0.024 3.976 21 N -0.905 5.905 22 Si 0.882 3.118 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.272 1.272 26 C 0.132 3.868 27 C -0.120 4.120 28 H 0.091 0.909 29 C -0.145 4.145 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.404 0.596 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.263 0.737 45 H 0.019 0.981 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.058 0.942 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.525 11.726 3.482 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.077 4.077 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.069 5.069 8 N -0.092 5.092 9 C -0.038 4.038 10 C 0.283 3.717 11 O -0.399 6.399 12 N -0.356 5.356 13 C 0.058 3.942 14 H 0.100 0.900 15 C -0.188 4.188 16 C 0.025 3.975 17 N -0.327 5.327 18 C -0.390 4.390 19 H 0.104 0.896 20 C -0.175 4.175 21 N -0.548 5.548 22 Si 0.713 3.287 23 H -0.216 1.216 24 H -0.231 1.231 25 H -0.197 1.197 26 C 0.006 3.994 27 C -0.140 4.140 28 H 0.110 0.890 29 C -0.202 4.202 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.240 0.760 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.038 0.962 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.951 12.088 5.242 21.470 hybrid contribution -0.908 -0.832 -1.723 2.118 sum -17.859 11.256 3.519 21.402 Atomic orbital electron populations 1.21854 0.91949 1.02697 1.03701 1.19788 0.97292 0.96598 0.89564 1.21824 1.02003 0.93001 1.03351 1.26058 0.94888 0.88784 0.97970 1.74937 1.20677 1.21036 0.98327 1.78608 1.06951 0.98874 1.22404 1.78918 1.18973 1.21771 0.87189 1.47842 1.33758 1.20774 1.06853 1.22042 0.96454 0.98957 0.86302 1.20162 0.86036 0.84039 0.81486 1.90808 1.68525 1.28354 1.52202 1.46069 1.21491 1.36787 1.31299 1.21005 0.80921 0.97772 0.94494 0.90029 1.22396 0.98415 0.98981 0.99011 1.20897 0.99180 0.92016 0.85406 1.44381 1.36493 1.51310 1.00555 1.18924 0.94728 1.17906 1.07468 0.89616 1.25297 0.96886 0.97985 0.97368 1.69832 1.29574 1.39691 1.15687 0.86960 0.87047 0.76467 0.78240 1.21585 1.23074 1.19749 1.21364 0.92470 0.89428 0.96143 1.21993 1.00261 0.99140 0.92635 0.89028 1.21792 0.98315 0.99925 1.00217 0.90768 0.92378 0.90919 0.89173 0.91845 0.90912 0.91069 0.84453 0.83826 0.75996 0.90648 0.92061 0.91725 0.96151 0.92657 0.96325 0.90430 0.92865 0.92297 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.18 37.16 0.34 -0.48 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -1.09 9.18 37.16 0.34 -0.75 16 4 C 0.20 2.27 6.64 -155.43 -1.03 1.24 16 5 N -0.30 -4.27 12.36 32.70 0.40 -3.86 16 6 N -0.07 -1.19 13.43 60.35 0.81 -0.38 16 7 N -0.08 -1.23 13.29 60.35 0.80 -0.43 16 8 N -0.29 -3.40 2.83 -59.44 -0.17 -3.57 16 9 C 0.09 0.71 6.57 -5.19 -0.03 0.68 16 10 C 0.50 5.69 7.86 -10.99 -0.09 5.61 16 11 O -0.52 -8.17 16.09 5.55 0.09 -8.08 16 12 N -0.70 -7.89 3.60 -53.76 -0.19 -8.08 16 13 C 0.16 2.18 2.21 -67.88 -0.15 2.03 16 14 H 0.08 1.13 7.58 -51.93 -0.39 0.73 16 15 C -0.15 -2.28 5.77 -26.61 -0.15 -2.44 16 16 C 0.15 2.69 6.26 -3.67 -0.02 2.67 16 17 N -0.60 -12.75 2.77 -172.27 -0.48 -13.22 16 18 C -0.26 -6.82 10.04 -15.06 -0.15 -6.98 16 19 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 20 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 21 N -0.91 -26.49 13.97 55.49 0.78 -25.72 16 22 Si 0.88 20.41 24.35 -169.99 -4.14 16.27 16 23 H -0.29 -6.33 6.62 56.52 0.37 -5.96 16 24 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.27 -5.97 6.64 56.52 0.38 -5.59 16 26 C 0.13 2.41 3.19 -3.71 -0.01 2.39 16 27 C -0.12 -1.72 2.67 -90.50 -0.24 -1.96 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 29 C -0.14 -1.66 9.05 37.16 0.34 -1.32 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.48 6.85 -51.92 -0.36 0.12 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.14 0.51 7.13 -51.93 -0.37 0.14 16 38 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.40 4.03 6.73 -40.82 -0.27 3.75 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 43 H 0.02 0.35 7.74 -51.93 -0.40 -0.06 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.02 0.32 5.57 -51.93 -0.29 0.03 16 46 H 0.08 1.62 4.50 -51.93 -0.23 1.39 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.05 0.49 7.54 -51.93 -0.39 0.10 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -34.16 385.79 -5.35 -39.51 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.81 Total: 0.87 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.26 Total: 0.87 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 1.95 Total: -55.26 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.14 Total: 16.27 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.16 -5.35 -39.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943483750.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.248 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds