Wall clock time and date at job start Tue Mar 31 2020 21:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47300 * 2 1 4 4 C 1.50695 * 109.47206 * 120.00369 * 2 1 3 5 5 N 1.31074 * 126.65957 * 299.96071 * 4 2 1 6 6 N 1.28843 * 107.99245 * 180.02562 * 5 4 2 7 7 N 1.28747 * 109.39502 * 359.72846 * 6 5 4 8 8 N 1.29015 * 108.80474 * 0.44045 * 7 6 5 9 9 C 1.46500 * 126.43271 * 179.83489 * 8 7 6 10 10 C 1.50701 * 109.47419 * 269.68975 * 9 8 7 11 11 O 1.21286 * 119.99671 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00482 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00228 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.45941 * 325.03036 * 13 12 10 15 15 C 1.53045 * 109.45877 * 85.00264 * 13 12 10 16 16 C 1.53188 * 109.34069 * 58.62668 * 15 13 12 17 17 N 1.47001 * 108.74101 * 54.61987 * 16 15 13 18 18 C 1.36937 * 120.61504 * 126.38839 * 17 16 15 19 19 H 1.07997 * 119.99643 * 332.62854 * 18 17 16 20 20 C 1.38803 * 120.00066 * 152.63695 * 18 17 16 21 21 N 1.31620 * 120.00336 * 159.31798 * 20 18 17 22 22 Si 1.86800 * 120.00061 * 339.31858 * 20 18 17 23 23 H 1.48496 * 109.47488 * 92.98162 * 22 20 18 24 24 H 1.48504 * 109.47112 * 212.98353 * 22 20 18 25 25 H 1.48505 * 109.47310 * 332.98100 * 22 20 18 26 26 C 1.46930 * 118.75400 * 306.41498 * 17 16 15 27 27 C 1.53043 * 109.44894 * 205.06360 * 13 12 10 28 28 H 1.09002 * 109.49651 * 181.40335 * 27 13 12 29 29 C 1.52995 * 109.49881 * 61.30475 * 27 13 12 30 30 H 1.09001 * 109.46905 * 60.00229 * 1 2 3 31 31 H 1.09001 * 109.47268 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47139 * 299.99805 * 1 2 3 33 33 H 1.09008 * 109.46862 * 240.00357 * 2 1 3 34 34 H 1.08998 * 109.46761 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46954 * 299.99741 * 3 2 1 36 36 H 1.08994 * 109.46734 * 60.00460 * 3 2 1 37 37 H 1.08997 * 109.47396 * 149.69062 * 9 8 7 38 38 H 1.09001 * 109.47322 * 29.68919 * 9 8 7 39 39 H 0.97001 * 120.00229 * 0.02562 * 12 10 9 40 40 H 1.08998 * 109.49426 * 178.59540 * 15 13 12 41 41 H 1.09000 * 109.49629 * 298.65481 * 15 13 12 42 42 H 1.08999 * 109.58983 * 174.43800 * 16 15 13 43 43 H 1.08999 * 109.58725 * 294.86741 * 16 15 13 44 44 H 0.96992 * 120.00173 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.58375 * 293.81771 * 26 17 16 46 46 H 1.08996 * 109.70463 * 173.46277 * 26 17 16 47 47 H 1.08998 * 109.47648 * 59.99560 * 29 27 13 48 48 H 1.09000 * 109.47325 * 180.02562 * 29 27 13 49 49 H 1.09006 * 109.46892 * 299.99927 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7981 -0.3781 2.4764 6 7 2.3997 -1.2283 3.2349 7 7 3.0068 -2.0978 2.5050 8 7 2.8090 -1.8093 1.2632 9 6 3.3271 -2.5435 0.1061 10 6 4.6650 -1.9752 -0.2914 11 8 5.1393 -1.0485 0.3308 12 7 5.3350 -2.4974 -1.3377 13 6 6.6354 -1.9446 -1.7245 14 1 6.6370 -0.8678 -1.5553 15 6 7.7363 -2.5946 -0.8833 16 6 7.7088 -4.1113 -1.0963 17 7 7.8065 -4.3878 -2.5368 18 6 8.7696 -5.2322 -3.0211 19 1 9.6996 -5.3541 -2.4858 20 6 8.5506 -5.9313 -4.2001 21 7 9.5706 -6.4084 -4.8815 22 14 6.8082 -6.1951 -4.8196 23 1 6.4484 -5.1069 -5.7638 24 1 6.7235 -7.5035 -5.5169 25 1 5.8673 -6.1848 -3.6707 26 6 6.8518 -3.7407 -3.4470 27 6 6.8891 -2.2282 -3.2069 28 1 7.8673 -1.8391 -3.4895 29 6 5.8065 -1.5505 -4.0491 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 2.6301 -2.4483 -0.7264 38 1 3.4419 -3.5960 0.3653 39 1 4.9559 -3.2388 -1.8352 40 1 8.7065 -2.2020 -1.1878 41 1 7.5683 -2.3720 0.1704 42 1 8.5516 -4.5685 -0.5778 43 1 6.7746 -4.5179 -0.7090 44 1 9.4175 -6.8972 -5.7052 45 1 5.8477 -4.1170 -3.2512 46 1 7.1267 -3.9536 -4.4800 47 1 5.8315 -0.4746 -3.8758 48 1 5.9873 -1.7531 -5.1047 49 1 4.8288 -1.9413 -3.7668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943483750.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:08 Heat of formation + Delta-G solvation = 74.985873 kcal Electronic energy + Delta-G solvation = -30735.284713 eV Core-core repulsion = 26734.782545 eV Total energy + Delta-G solvation = -4000.502168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -45.28630 -41.48557 -39.52151 -37.15427 -36.47495 -36.03145 -34.04419 -33.64752 -32.60213 -32.08612 -29.97075 -28.09994 -27.58289 -27.03965 -25.47046 -24.80142 -24.05655 -22.61780 -22.28314 -21.51548 -20.45125 -19.25208 -18.90623 -18.57626 -17.57258 -17.16079 -16.88679 -16.70778 -16.18213 -15.96380 -15.59170 -15.39873 -15.24030 -14.95694 -14.85232 -14.43718 -14.35465 -14.18479 -13.89599 -13.76166 -13.55137 -13.21022 -13.08331 -13.05783 -12.97157 -12.68890 -12.62072 -12.47407 -12.28734 -12.27495 -12.26812 -12.10040 -11.95135 -11.88183 -11.63563 -11.52533 -11.30341 -11.19964 -10.93831 -10.62985 -10.17963 -8.91575 -8.13426 -5.47278 0.10817 0.83632 1.14141 1.33361 1.33467 1.46375 1.56283 2.02058 2.45663 2.89009 3.06508 3.16150 3.32300 3.41174 3.60679 3.69839 3.90046 3.93340 4.03064 4.03654 4.06928 4.20304 4.23870 4.38130 4.39886 4.51652 4.59565 4.65259 4.68634 4.79005 4.85078 4.86038 4.87722 4.91548 4.95051 4.98622 5.02930 5.09760 5.15366 5.25544 5.29676 5.30204 5.36399 5.36783 5.51035 5.88348 6.14411 6.34471 6.93279 6.99959 7.49552 7.63592 8.01524 9.06665 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.003079 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.259987 B = 9091.323888 C = 9395.573908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 C -0.141 4.141 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.105 5.105 8 N -0.290 5.290 9 C 0.084 3.916 10 C 0.506 3.494 11 O -0.568 6.568 12 N -0.695 5.695 13 C 0.173 3.827 14 H 0.085 0.915 15 C -0.140 4.140 16 C 0.151 3.849 17 N -0.616 5.616 18 C -0.253 4.253 19 H 0.040 0.960 20 C -0.041 4.041 21 N -0.962 5.962 22 Si 0.953 3.047 23 H -0.266 1.266 24 H -0.319 1.319 25 H -0.243 1.243 26 C 0.126 3.874 27 C -0.110 4.110 28 H 0.071 0.929 29 C -0.139 4.139 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.123 0.877 34 H 0.040 0.960 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.193 0.807 38 H 0.168 0.832 39 H 0.415 0.585 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.261 0.739 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.662 12.636 1.992 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.199 4.199 4 C -0.069 4.069 5 N -0.178 5.178 6 N -0.102 5.102 7 N -0.091 5.091 8 N -0.091 5.091 9 C -0.040 4.040 10 C 0.291 3.709 11 O -0.447 6.447 12 N -0.348 5.348 13 C 0.069 3.931 14 H 0.103 0.897 15 C -0.180 4.180 16 C 0.027 3.973 17 N -0.341 5.341 18 C -0.383 4.383 19 H 0.058 0.942 20 C -0.236 4.236 21 N -0.608 5.608 22 Si 0.780 3.220 23 H -0.192 1.192 24 H -0.249 1.249 25 H -0.167 1.167 26 C 0.002 3.998 27 C -0.130 4.130 28 H 0.089 0.911 29 C -0.197 4.197 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.059 0.941 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.210 0.790 38 H 0.185 0.815 39 H 0.253 0.747 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.135 13.020 3.771 25.108 hybrid contribution 0.515 -1.055 -1.213 1.688 sum -20.619 11.965 2.558 23.976 Atomic orbital electron populations 1.21853 0.90500 1.03280 1.04161 1.20133 0.98354 0.96056 0.88729 1.21814 1.00470 0.93577 1.04086 1.26813 0.93555 0.88188 0.98305 1.74854 1.21603 1.21553 0.99816 1.78569 1.08145 0.99802 1.23668 1.78814 1.19440 1.22184 0.88693 1.48076 1.33335 1.20978 1.06681 1.22522 0.95469 0.99325 0.86717 1.20631 0.86805 0.83057 0.80432 1.90814 1.69857 1.30502 1.53506 1.45874 1.20426 1.36945 1.31528 1.20712 0.81364 0.97772 0.93297 0.89690 1.22266 0.98960 0.97223 0.99518 1.20956 0.99304 0.93557 0.83530 1.44427 1.36238 1.51088 1.02300 1.18791 0.94366 1.18337 1.06765 0.94174 1.26046 1.01361 0.98218 0.97936 1.70004 1.32324 1.41852 1.16650 0.85825 0.81612 0.75832 0.78695 1.19210 1.24900 1.16686 1.21505 0.92593 0.91712 0.94037 1.21821 1.00855 0.96526 0.93842 0.91098 1.21765 0.98058 1.00650 0.99232 0.88152 0.91744 0.92652 0.85898 0.94104 0.88009 0.92579 0.78971 0.81461 0.74692 0.92081 0.92001 0.93830 0.93961 0.93045 0.93318 0.92980 0.91347 0.92606 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.18 71.98 0.66 -0.39 16 2 C -0.01 -0.12 3.26 -11.54 -0.04 -0.16 16 3 C -0.14 -1.76 9.18 71.98 0.66 -1.10 16 4 C 0.21 4.23 6.64 138.13 0.92 5.14 16 5 N -0.33 -9.14 12.36 -50.45 -0.62 -9.76 16 6 N -0.11 -3.43 13.43 37.01 0.50 -2.93 16 7 N -0.11 -2.99 13.29 37.02 0.49 -2.50 16 8 N -0.29 -5.92 2.83 -341.98 -0.97 -6.89 16 9 C 0.08 0.92 6.57 85.63 0.56 1.48 16 10 C 0.51 9.43 7.86 87.66 0.69 10.11 16 11 O -0.57 -16.36 16.09 -3.05 -0.05 -16.41 16 12 N -0.69 -12.33 3.60 -442.39 -1.59 -13.93 16 13 C 0.17 4.17 2.21 45.02 0.10 4.27 16 14 H 0.09 2.10 7.58 -2.39 -0.02 2.08 16 15 C -0.14 -4.16 5.77 30.67 0.18 -3.98 16 16 C 0.15 5.27 6.26 86.35 0.54 5.81 16 17 N -0.62 -25.49 2.77 -698.93 -1.94 -27.43 16 18 C -0.25 -13.54 10.04 84.03 0.84 -12.70 16 19 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 20 C -0.04 -2.27 5.23 84.86 0.44 -1.83 16 21 N -0.96 -58.55 13.97 21.65 0.30 -58.24 16 22 Si 0.95 41.29 24.35 68.60 1.67 42.96 16 23 H -0.27 -10.50 6.62 99.48 0.66 -9.84 16 24 H -0.32 -14.68 7.11 99.48 0.71 -13.98 16 25 H -0.24 -9.27 6.64 99.48 0.66 -8.61 16 26 C 0.13 4.22 3.19 86.36 0.28 4.50 16 27 C -0.11 -2.84 2.67 -10.72 -0.03 -2.87 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 C -0.14 -2.53 9.05 71.98 0.65 -1.87 16 30 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.12 0.53 6.85 -2.38 -0.02 0.51 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.19 -0.03 7.13 -2.39 -0.02 -0.05 16 38 H 0.17 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.41 5.71 6.73 -92.71 -0.62 5.08 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.04 1.67 7.93 -2.39 -0.02 1.65 16 43 H 0.04 1.31 7.74 -2.39 -0.02 1.29 16 44 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 45 H 0.05 1.36 5.57 -2.39 -0.01 1.35 16 46 H 0.05 2.04 4.50 -2.39 -0.01 2.03 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.08 1.00 7.54 -2.38 -0.02 0.98 16 Total: -1.00 -81.43 385.79 4.49 -76.94 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.24 Total: 11.79 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.46 Total: 6.40 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -3.83 Total: -121.68 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.05 Total: -16.41 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.67 Total: 42.96 kcal Total: -81.43 4.49 -76.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943483750.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.928 kcal (2) G-P(sol) polarization free energy of solvation -81.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds