Wall clock time and date at job start Tue Mar 31 2020 21:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46932 * 2 1 4 4 C 1.50701 * 109.47507 * 119.99714 * 2 1 3 5 5 N 1.31071 * 126.66280 * 300.17818 * 4 2 1 6 6 N 1.28838 * 107.99086 * 180.23877 * 5 4 2 7 7 N 1.28731 * 109.39742 * 359.74896 * 6 5 4 8 8 N 1.29020 * 108.81068 * 0.02562 * 7 6 5 9 9 C 1.46498 * 126.43850 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47312 * 90.01748 * 9 8 7 11 11 O 1.21288 * 119.99887 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00260 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00306 * 179.72715 * 12 10 9 14 14 H 1.08997 * 109.45855 * 35.27301 * 13 12 10 15 15 C 1.53043 * 109.46136 * 275.30115 * 13 12 10 16 16 C 1.53164 * 109.32932 * 301.36027 * 15 13 12 17 17 N 1.46924 * 108.76362 * 305.35451 * 16 15 13 18 18 C 1.36941 * 120.63015 * 233.58549 * 17 16 15 19 19 H 1.08002 * 120.00441 * 152.30634 * 18 17 16 20 20 C 1.38816 * 119.99855 * 332.31127 * 18 17 16 21 21 N 1.31621 * 119.99789 * 342.59426 * 20 18 17 22 22 Si 1.86792 * 119.99967 * 162.59856 * 20 18 17 23 23 H 1.48500 * 109.47175 * 94.34691 * 22 20 18 24 24 H 1.48504 * 109.47238 * 214.34652 * 22 20 18 25 25 H 1.48500 * 109.47437 * 334.34387 * 22 20 18 26 26 C 1.46927 * 118.74243 * 53.60907 * 17 16 15 27 27 C 1.53045 * 109.46183 * 155.24841 * 13 12 10 28 28 H 1.09000 * 109.49337 * 178.60997 * 27 13 12 29 29 C 1.52997 * 109.49673 * 298.66920 * 27 13 12 30 30 H 1.08994 * 109.47239 * 60.00002 * 1 2 3 31 31 H 1.09000 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46987 * 299.99469 * 1 2 3 33 33 H 1.08997 * 109.47387 * 240.00170 * 2 1 3 34 34 H 1.08997 * 109.46623 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46658 * 299.99876 * 3 2 1 36 36 H 1.08997 * 109.46946 * 59.99900 * 3 2 1 37 37 H 1.09001 * 109.47211 * 330.01860 * 9 8 7 38 38 H 1.08995 * 109.47226 * 210.01857 * 9 8 7 39 39 H 0.97005 * 120.00207 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.49519 * 61.29084 * 15 13 12 41 41 H 1.09000 * 109.50039 * 181.39105 * 15 13 12 42 42 H 1.08995 * 109.59247 * 185.56752 * 16 15 13 43 43 H 1.09007 * 109.70858 * 65.20254 * 16 15 13 44 44 H 0.96998 * 119.99658 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58341 * 186.60615 * 26 17 16 46 46 H 1.09002 * 109.58793 * 66.18083 * 26 17 16 47 47 H 1.09002 * 109.47287 * 59.99908 * 29 27 13 48 48 H 1.08999 * 109.47481 * 179.97438 * 29 27 13 49 49 H 1.09001 * 109.47359 * 300.00595 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7951 -0.3802 2.4765 6 7 2.4016 -1.2268 3.2350 7 7 3.0154 -2.0915 2.5051 8 7 2.8097 -1.8087 1.2632 9 6 3.3290 -2.5420 0.1062 10 6 2.3503 -3.6182 -0.2871 11 8 1.3200 -3.7586 0.3374 12 7 2.6193 -4.4241 -1.3333 13 6 1.6706 -5.4743 -1.7119 14 1 0.6529 -5.1227 -1.5423 15 6 1.9266 -6.7226 -0.8643 16 6 3.3681 -7.1939 -1.0785 17 7 3.5939 -7.3853 -2.5176 18 6 4.0762 -8.5742 -2.9961 19 1 3.8351 -8.8900 -4.0004 20 6 4.8752 -9.3738 -2.1902 21 7 5.4506 -8.8644 -1.1217 22 14 5.1337 -11.1726 -2.6224 23 1 6.3802 -11.3167 -3.4166 24 1 5.2466 -11.9701 -1.3748 25 1 3.9797 -11.6610 -3.4193 26 6 3.2928 -6.2767 -3.4336 27 6 1.8520 -5.8156 -3.1928 28 1 1.1633 -6.6141 -3.4690 29 6 1.5631 -4.5758 -4.0416 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 4.2854 -2.9971 0.3639 38 1 3.4671 -1.8540 -0.7278 39 1 3.4427 -4.3112 -1.8334 40 1 1.7747 -6.4848 0.1885 41 1 1.2374 -7.5125 -1.1625 42 1 3.5259 -8.1369 -0.5552 43 1 4.0607 -6.4437 -0.6966 44 1 6.0092 -9.4230 -0.5589 45 1 3.4008 -6.6147 -4.4642 46 1 3.9776 -5.4500 -3.2443 47 1 2.2526 -3.7779 -3.7658 48 1 1.6929 -4.8192 -5.0961 49 1 0.5386 -4.2469 -3.8676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943483751.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:14 Heat of formation + Delta-G solvation = 93.679410 kcal Electronic energy + Delta-G solvation = -30592.014444 eV Core-core repulsion = 26592.322889 eV Total energy + Delta-G solvation = -3999.691555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -44.25133 -40.23617 -38.02683 -36.41122 -35.43457 -34.45968 -32.83306 -31.61350 -31.28117 -30.43865 -28.89886 -27.56063 -26.02102 -25.35600 -24.55711 -23.58520 -22.26879 -21.40809 -21.14870 -20.62083 -18.86209 -18.14510 -17.77718 -16.82552 -16.40082 -15.99436 -15.69671 -15.11846 -14.91408 -14.81465 -14.27560 -14.09846 -13.93930 -13.59441 -13.57279 -13.45216 -13.15538 -12.83594 -12.71066 -12.55035 -12.31675 -12.17409 -11.95402 -11.68991 -11.64269 -11.51727 -11.49691 -11.39270 -11.21604 -11.06319 -10.96547 -10.77584 -10.48247 -10.36321 -10.20715 -10.14559 -9.89175 -9.87762 -9.57144 -8.90649 -8.56589 -6.80769 -5.90192 -3.33210 1.12187 1.70858 2.21753 2.35130 3.06185 3.30433 3.39023 3.40441 3.66052 3.96280 4.20821 4.38200 4.40912 4.55264 4.61660 4.74755 4.91983 4.99078 5.16251 5.21933 5.26439 5.29761 5.34926 5.40189 5.45141 5.48669 5.53233 5.64875 5.69660 5.78923 5.83099 5.91625 5.92537 5.97515 5.99676 6.10502 6.13233 6.27813 6.44507 6.52019 6.57716 6.72804 6.75886 7.22457 7.41292 7.54298 7.69476 8.03844 8.32680 8.57743 9.08971 9.72168 10.26956 11.17964 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.002937 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.060817 B = 9530.510141 C =10408.945336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.199 3.801 5 N -0.303 5.303 6 N -0.076 5.076 7 N -0.081 5.081 8 N -0.290 5.290 9 C 0.089 3.911 10 C 0.500 3.500 11 O -0.527 6.527 12 N -0.699 5.699 13 C 0.163 3.837 14 H 0.075 0.925 15 C -0.156 4.156 16 C 0.174 3.826 17 N -0.591 5.591 18 C -0.257 4.257 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.152 3.848 27 C -0.120 4.120 28 H 0.084 0.916 29 C -0.141 4.141 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.404 0.596 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.018 0.982 44 H 0.255 0.745 45 H 0.058 0.942 46 H 0.013 0.987 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 18.145 -4.533 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.079 4.079 5 N -0.151 5.151 6 N -0.070 5.070 7 N -0.066 5.066 8 N -0.091 5.091 9 C -0.037 4.037 10 C 0.283 3.717 11 O -0.403 6.403 12 N -0.351 5.351 13 C 0.059 3.941 14 H 0.093 0.907 15 C -0.196 4.196 16 C 0.048 3.952 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.204 1.204 26 C 0.025 3.975 27 C -0.140 4.140 28 H 0.102 0.898 29 C -0.199 4.199 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.241 0.759 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.036 0.964 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.030 0.970 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.434 17.745 -2.530 19.045 hybrid contribution 0.744 -1.177 -1.309 1.911 sum -5.690 16.568 -3.839 17.934 Atomic orbital electron populations 1.21820 0.91796 1.03280 1.03269 1.19774 0.97835 0.95944 0.89628 1.21851 1.01237 0.93462 1.03623 1.26033 0.94916 0.89010 0.97940 1.74916 1.19833 1.22021 0.98343 1.78598 1.06927 0.99040 1.22438 1.78938 1.20004 1.20461 0.87214 1.47853 1.34441 1.19886 1.06895 1.22053 0.99768 0.95747 0.86154 1.20133 0.87206 0.82888 0.81510 1.90797 1.26292 1.71099 1.52091 1.46005 1.24698 1.33246 1.31169 1.20981 0.91706 0.86830 0.94580 0.90716 1.22580 1.02389 0.96165 0.98442 1.20717 0.88744 1.00660 0.85047 1.44072 1.74862 1.10660 1.01739 1.19147 1.24522 0.95059 0.99957 0.91657 1.25030 0.96655 0.99201 0.98503 1.70018 1.32446 1.34621 1.17301 0.86307 0.77988 0.85184 0.77428 1.21424 1.21516 1.20403 1.20906 0.90774 0.90747 0.95062 1.21977 1.01581 0.97703 0.92783 0.89772 1.21767 1.00749 0.97599 0.99821 0.90978 0.91845 0.91106 0.89157 0.92367 0.90830 0.90961 0.83751 0.84535 0.75932 0.92687 0.91530 0.89483 0.96428 0.93543 0.92346 0.96967 0.93165 0.92569 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.18 37.16 0.34 -0.83 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -0.89 9.18 37.16 0.34 -0.55 16 4 C 0.20 2.43 6.64 -155.43 -1.03 1.40 16 5 N -0.30 -4.56 12.36 32.70 0.40 -4.16 16 6 N -0.08 -1.30 13.43 60.35 0.81 -0.49 16 7 N -0.08 -1.31 13.29 60.35 0.80 -0.51 16 8 N -0.29 -3.75 2.83 -59.45 -0.17 -3.91 16 9 C 0.09 0.83 6.57 -5.20 -0.03 0.80 16 10 C 0.50 6.48 7.86 -10.99 -0.09 6.40 16 11 O -0.53 -9.12 16.10 5.55 0.09 -9.03 16 12 N -0.70 -8.77 3.60 -53.76 -0.19 -8.97 16 13 C 0.16 2.42 2.21 -67.88 -0.15 2.27 16 14 H 0.07 1.14 7.58 -51.93 -0.39 0.75 16 15 C -0.16 -2.85 5.77 -26.62 -0.15 -3.01 16 16 C 0.17 3.81 5.05 -3.73 -0.02 3.80 16 17 N -0.59 -13.21 2.99 -172.33 -0.52 -13.72 16 18 C -0.26 -6.57 9.58 -15.06 -0.14 -6.71 16 19 H 0.07 1.64 7.89 -52.49 -0.41 1.23 16 20 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 21 N -0.90 -24.87 11.19 55.49 0.62 -24.25 16 22 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 C 0.15 2.63 5.50 -3.71 -0.02 2.61 16 27 C -0.12 -1.69 2.67 -90.50 -0.24 -1.93 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 C -0.14 -1.51 9.05 37.16 0.34 -1.17 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.53 6.84 -51.93 -0.36 0.18 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.14 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.14 0.63 7.12 -51.93 -0.37 0.26 16 39 H 0.40 4.47 6.73 -40.82 -0.27 4.20 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.09 2.24 6.04 -51.93 -0.31 1.93 16 43 H 0.02 0.40 7.75 -51.92 -0.40 0.00 16 44 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.06 1.02 7.93 -51.93 -0.41 0.61 16 46 H 0.01 0.20 6.64 -51.93 -0.34 -0.14 16 47 H 0.05 0.47 7.54 -51.93 -0.39 0.08 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -33.55 392.20 -6.40 -39.94 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.88 Total: 0.61 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.25 Total: 2.74 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 1.76 Total: -56.01 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.55 -6.40 -39.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943483751.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.624 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds