Wall clock time and date at job start Tue Mar 31 2020 21:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46932 * 2 1 4 4 C 1.50701 * 109.47507 * 119.99714 * 2 1 3 5 5 N 1.31071 * 126.66280 * 300.17818 * 4 2 1 6 6 N 1.28838 * 107.99086 * 180.23877 * 5 4 2 7 7 N 1.28731 * 109.39742 * 359.74896 * 6 5 4 8 8 N 1.29020 * 108.81068 * 0.02562 * 7 6 5 9 9 C 1.46498 * 126.43850 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47312 * 90.01748 * 9 8 7 11 11 O 1.21288 * 119.99887 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00260 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00306 * 179.72715 * 12 10 9 14 14 H 1.08997 * 109.45855 * 35.27301 * 13 12 10 15 15 C 1.53043 * 109.46136 * 275.30115 * 13 12 10 16 16 C 1.53164 * 109.32932 * 301.36027 * 15 13 12 17 17 N 1.46924 * 108.76362 * 305.35451 * 16 15 13 18 18 C 1.36941 * 120.63015 * 233.58549 * 17 16 15 19 19 H 1.08002 * 120.00441 * 152.30634 * 18 17 16 20 20 C 1.38816 * 119.99855 * 332.31127 * 18 17 16 21 21 N 1.31621 * 119.99789 * 342.59426 * 20 18 17 22 22 Si 1.86792 * 119.99967 * 162.59856 * 20 18 17 23 23 H 1.48500 * 109.47175 * 94.34691 * 22 20 18 24 24 H 1.48504 * 109.47238 * 214.34652 * 22 20 18 25 25 H 1.48500 * 109.47437 * 334.34387 * 22 20 18 26 26 C 1.46927 * 118.74243 * 53.60907 * 17 16 15 27 27 C 1.53045 * 109.46183 * 155.24841 * 13 12 10 28 28 H 1.09000 * 109.49337 * 178.60997 * 27 13 12 29 29 C 1.52997 * 109.49673 * 298.66920 * 27 13 12 30 30 H 1.08994 * 109.47239 * 60.00002 * 1 2 3 31 31 H 1.09000 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46987 * 299.99469 * 1 2 3 33 33 H 1.08997 * 109.47387 * 240.00170 * 2 1 3 34 34 H 1.08997 * 109.46623 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46658 * 299.99876 * 3 2 1 36 36 H 1.08997 * 109.46946 * 59.99900 * 3 2 1 37 37 H 1.09001 * 109.47211 * 330.01860 * 9 8 7 38 38 H 1.08995 * 109.47226 * 210.01857 * 9 8 7 39 39 H 0.97005 * 120.00207 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.49519 * 61.29084 * 15 13 12 41 41 H 1.09000 * 109.50039 * 181.39105 * 15 13 12 42 42 H 1.08995 * 109.59247 * 185.56752 * 16 15 13 43 43 H 1.09007 * 109.70858 * 65.20254 * 16 15 13 44 44 H 0.96998 * 119.99658 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58341 * 186.60615 * 26 17 16 46 46 H 1.09002 * 109.58793 * 66.18083 * 26 17 16 47 47 H 1.09002 * 109.47287 * 59.99908 * 29 27 13 48 48 H 1.08999 * 109.47481 * 179.97438 * 29 27 13 49 49 H 1.09001 * 109.47359 * 300.00595 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7951 -0.3802 2.4765 6 7 2.4016 -1.2268 3.2350 7 7 3.0154 -2.0915 2.5051 8 7 2.8097 -1.8087 1.2632 9 6 3.3290 -2.5420 0.1062 10 6 2.3503 -3.6182 -0.2871 11 8 1.3200 -3.7586 0.3374 12 7 2.6193 -4.4241 -1.3333 13 6 1.6706 -5.4743 -1.7119 14 1 0.6529 -5.1227 -1.5423 15 6 1.9266 -6.7226 -0.8643 16 6 3.3681 -7.1939 -1.0785 17 7 3.5939 -7.3853 -2.5176 18 6 4.0762 -8.5742 -2.9961 19 1 3.8351 -8.8900 -4.0004 20 6 4.8752 -9.3738 -2.1902 21 7 5.4506 -8.8644 -1.1217 22 14 5.1337 -11.1726 -2.6224 23 1 6.3802 -11.3167 -3.4166 24 1 5.2466 -11.9701 -1.3748 25 1 3.9797 -11.6610 -3.4193 26 6 3.2928 -6.2767 -3.4336 27 6 1.8520 -5.8156 -3.1928 28 1 1.1633 -6.6141 -3.4690 29 6 1.5631 -4.5758 -4.0416 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 4.2854 -2.9971 0.3639 38 1 3.4671 -1.8540 -0.7278 39 1 3.4427 -4.3112 -1.8334 40 1 1.7747 -6.4848 0.1885 41 1 1.2374 -7.5125 -1.1625 42 1 3.5259 -8.1369 -0.5552 43 1 4.0607 -6.4437 -0.6966 44 1 6.0092 -9.4230 -0.5589 45 1 3.4008 -6.6147 -4.4642 46 1 3.9776 -5.4500 -3.2443 47 1 2.2526 -3.7779 -3.7658 48 1 1.6929 -4.8192 -5.0961 49 1 0.5386 -4.2469 -3.8676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943483751.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:13 Heat of formation + Delta-G solvation = 71.040923 kcal Electronic energy + Delta-G solvation = -30592.996122 eV Core-core repulsion = 26592.322889 eV Total energy + Delta-G solvation = -4000.673234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -45.29220 -41.40009 -39.34920 -37.14728 -36.45477 -36.00668 -34.11095 -32.89916 -32.57964 -31.94507 -29.93550 -28.08964 -27.36434 -26.96117 -25.46500 -24.72049 -23.72740 -22.81750 -22.20565 -21.49475 -20.19315 -19.19963 -18.82069 -18.49939 -17.48870 -16.92504 -16.81422 -16.65163 -16.13566 -15.74151 -15.62982 -15.42780 -15.18204 -14.78502 -14.72035 -14.40260 -14.21703 -14.17177 -13.74815 -13.51697 -13.23244 -13.12876 -13.07219 -12.94837 -12.69406 -12.68586 -12.53380 -12.48050 -12.35681 -12.28123 -12.26425 -12.21157 -11.97456 -11.87708 -11.64420 -11.49215 -11.21962 -11.11936 -10.92761 -10.52510 -10.12156 -8.65763 -7.87666 -5.30892 0.11077 0.83788 1.13827 1.34835 1.44754 1.48774 1.56272 2.06879 2.50859 2.89397 3.16395 3.28427 3.41706 3.60821 3.69074 3.80357 3.90020 4.04027 4.05937 4.07653 4.14653 4.20446 4.39082 4.40081 4.60096 4.65002 4.65439 4.78904 4.80018 4.82942 4.85998 4.92683 4.95380 4.99357 5.00756 5.12784 5.15856 5.20754 5.30886 5.36503 5.37728 5.44089 5.48062 5.57163 5.65387 5.74391 6.38072 6.39393 7.03442 7.15450 7.49152 7.88074 8.37037 9.17744 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.002937 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.060817 B = 9530.510141 C =10408.945336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.011 4.011 3 C -0.139 4.139 4 C 0.210 3.790 5 N -0.329 5.329 6 N -0.108 5.108 7 N -0.109 5.109 8 N -0.290 5.290 9 C 0.086 3.914 10 C 0.503 3.497 11 O -0.573 6.573 12 N -0.690 5.690 13 C 0.173 3.827 14 H 0.078 0.922 15 C -0.145 4.145 16 C 0.188 3.812 17 N -0.608 5.608 18 C -0.258 4.258 19 H 0.068 0.932 20 C -0.048 4.048 21 N -0.930 5.930 22 Si 0.957 3.043 23 H -0.285 1.285 24 H -0.299 1.299 25 H -0.271 1.271 26 C 0.148 3.852 27 C -0.106 4.106 28 H 0.072 0.928 29 C -0.133 4.133 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.161 0.839 38 H 0.196 0.804 39 H 0.415 0.585 40 H 0.041 0.959 41 H 0.057 0.943 42 H 0.041 0.959 43 H 0.008 0.992 44 H 0.247 0.753 45 H 0.058 0.942 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 20.398 -7.720 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.197 4.197 4 C -0.068 4.068 5 N -0.178 5.178 6 N -0.101 5.101 7 N -0.095 5.095 8 N -0.091 5.091 9 C -0.038 4.038 10 C 0.288 3.712 11 O -0.452 6.452 12 N -0.342 5.342 13 C 0.068 3.932 14 H 0.096 0.904 15 C -0.186 4.186 16 C 0.062 3.938 17 N -0.331 5.331 18 C -0.388 4.388 19 H 0.086 0.914 20 C -0.244 4.244 21 N -0.577 5.577 22 Si 0.786 3.214 23 H -0.212 1.212 24 H -0.226 1.226 25 H -0.196 1.196 26 C 0.023 3.977 27 C -0.127 4.127 28 H 0.090 0.910 29 C -0.191 4.191 30 H 0.122 0.878 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.179 0.821 38 H 0.213 0.787 39 H 0.253 0.747 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.051 0.949 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.606 20.020 -5.767 21.856 hybrid contribution 0.743 -1.869 -0.378 2.046 sum -5.863 18.151 -6.144 20.040 Atomic orbital electron populations 1.21813 0.92017 1.01902 1.04168 1.20157 0.97536 0.96978 0.88604 1.21853 1.01588 0.92046 1.04233 1.26870 0.93242 0.88309 0.98403 1.74833 1.20649 1.22523 0.99787 1.78553 1.07988 0.99918 1.23676 1.78842 1.20885 1.20968 0.88828 1.48073 1.34295 1.20072 1.06619 1.22485 0.98600 0.95965 0.86756 1.20661 0.86990 0.83083 0.80503 1.90796 1.28581 1.72438 1.53401 1.45839 1.24643 1.32396 1.31335 1.20737 0.92445 0.85630 0.94389 0.90415 1.22404 0.99709 0.97954 0.98495 1.20384 0.90503 0.98098 0.84856 1.44265 1.74915 1.11529 1.02377 1.19467 1.23137 0.96388 0.99801 0.91430 1.25674 0.97391 1.02396 0.98928 1.70152 1.33714 1.35361 1.18437 0.85418 0.77992 0.81353 0.76621 1.21167 1.22613 1.19615 1.21130 0.93014 0.89684 0.93857 1.21808 0.98926 0.99275 0.92672 0.91005 1.21704 1.01963 0.95935 0.99471 0.87785 0.94257 0.92565 0.85886 0.91791 0.87949 0.92646 0.82148 0.78662 0.74654 0.94061 0.92414 0.94016 0.97377 0.94390 0.92370 0.94854 0.91129 0.91566 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.18 71.98 0.66 -1.30 16 2 C -0.01 -0.14 3.26 -11.54 -0.04 -0.18 16 3 C -0.14 -1.23 9.18 71.98 0.66 -0.57 16 4 C 0.21 4.79 6.64 138.14 0.92 5.71 16 5 N -0.33 -9.96 12.36 -50.45 -0.62 -10.58 16 6 N -0.11 -3.75 13.43 37.01 0.50 -3.26 16 7 N -0.11 -3.55 13.29 37.02 0.49 -3.06 16 8 N -0.29 -7.01 2.83 -341.99 -0.97 -7.98 16 9 C 0.09 1.32 6.57 85.63 0.56 1.89 16 10 C 0.50 11.85 7.86 87.66 0.69 12.54 16 11 O -0.57 -19.32 16.10 -3.05 -0.05 -19.37 16 12 N -0.69 -15.39 3.60 -442.40 -1.59 -16.99 16 13 C 0.17 4.82 2.21 45.02 0.10 4.92 16 14 H 0.08 2.22 7.58 -2.39 -0.02 2.20 16 15 C -0.15 -5.38 5.77 30.66 0.18 -5.21 16 16 C 0.19 8.38 5.05 86.35 0.44 8.81 16 17 N -0.61 -26.91 2.99 -699.14 -2.09 -29.01 16 18 C -0.26 -13.13 9.58 84.03 0.81 -12.32 16 19 H 0.07 3.35 7.89 -2.91 -0.02 3.33 16 20 C -0.05 -2.58 4.91 84.86 0.42 -2.16 16 21 N -0.93 -52.85 11.19 21.65 0.24 -52.60 16 22 Si 0.96 43.50 29.59 68.60 2.03 45.53 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 26 C 0.15 4.77 5.50 86.36 0.48 5.25 16 27 C -0.11 -2.70 2.67 -10.72 -0.03 -2.73 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 C -0.13 -2.22 9.05 71.98 0.65 -1.56 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.12 0.76 6.84 -2.39 -0.02 0.74 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.16 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.20 0.63 7.12 -2.39 -0.02 0.61 16 39 H 0.42 7.57 6.73 -92.70 -0.62 6.95 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.04 2.24 6.04 -2.39 -0.01 2.23 16 43 H 0.01 0.37 7.75 -2.38 -0.02 0.36 16 44 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 45 H 0.06 1.88 7.93 -2.39 -0.02 1.87 16 46 H 0.03 0.96 6.64 -2.39 -0.02 0.94 16 47 H 0.07 0.91 7.54 -2.39 -0.02 0.89 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -78.55 392.20 4.75 -73.80 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.33 Total: 10.44 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.49 Total: 13.08 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -4.05 Total: -123.48 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -78.55 4.75 -73.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943483751.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.840 kcal (2) G-P(sol) polarization free energy of solvation -78.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds