Wall clock time and date at job start Tue Mar 31 2020 21:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.50699 * 109.46848 * 119.99748 * 2 1 3 5 5 N 1.31071 * 126.66348 * 299.68711 * 4 2 1 6 6 N 1.28838 * 107.99289 * 179.89352 * 5 4 2 7 7 N 1.28742 * 109.39546 * 0.38248 * 6 5 4 8 8 N 1.29016 * 108.80894 * 359.75772 * 7 6 5 9 9 C 1.46504 * 126.43875 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47298 * 270.03138 * 9 8 7 11 11 O 1.21285 * 120.00382 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99910 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99983 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.45998 * 324.99425 * 13 12 10 15 15 C 1.53034 * 109.46355 * 84.96980 * 13 12 10 16 16 C 1.53193 * 109.31213 * 181.38795 * 15 13 12 17 17 N 1.46928 * 108.77511 * 305.36317 * 16 15 13 18 18 C 1.36940 * 120.63132 * 233.58961 * 17 16 15 19 19 H 1.07998 * 119.99945 * 152.79786 * 18 17 16 20 20 C 1.38811 * 119.99840 * 332.79892 * 18 17 16 21 21 N 1.31625 * 120.00041 * 159.75293 * 20 18 17 22 22 Si 1.86795 * 120.00219 * 339.75284 * 20 18 17 23 23 H 1.48495 * 109.47335 * 94.89394 * 22 20 18 24 24 H 1.48499 * 109.47479 * 214.89550 * 22 20 18 25 25 H 1.48501 * 109.47134 * 334.89370 * 22 20 18 26 26 C 1.46919 * 118.73958 * 53.60717 * 17 16 15 27 27 C 1.53046 * 109.46019 * 205.02604 * 13 12 10 28 28 H 1.09000 * 109.49427 * 298.56371 * 27 13 12 29 29 C 1.53004 * 109.49619 * 58.65617 * 27 13 12 30 30 H 1.08999 * 109.47226 * 300.00272 * 1 2 3 31 31 H 1.09005 * 109.47117 * 60.00197 * 1 2 3 32 32 H 1.09005 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47226 * 239.99728 * 2 1 3 34 34 H 1.08995 * 109.46895 * 299.99853 * 3 2 1 35 35 H 1.09005 * 109.46640 * 59.99876 * 3 2 1 36 36 H 1.08997 * 109.47060 * 179.97438 * 3 2 1 37 37 H 1.09003 * 109.46818 * 30.03118 * 9 8 7 38 38 H 1.09000 * 109.46982 * 150.02516 * 9 8 7 39 39 H 0.96999 * 120.00419 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.49967 * 301.33493 * 15 13 12 41 41 H 1.09000 * 109.50094 * 61.43330 * 15 13 12 42 42 H 1.08994 * 109.58897 * 65.15151 * 16 15 13 43 43 H 1.09005 * 109.58694 * 185.57727 * 16 15 13 44 44 H 0.96996 * 119.99857 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58907 * 66.18159 * 26 17 16 46 46 H 1.09002 * 109.59098 * 186.46577 * 26 17 16 47 47 H 1.08997 * 109.47180 * 60.00480 * 29 27 13 48 48 H 1.09002 * 109.46735 * 180.02562 * 29 27 13 49 49 H 1.09001 * 109.47305 * 299.99868 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.8022 -0.3750 2.4765 6 7 2.3997 -1.2279 3.2351 7 7 3.0117 -2.0941 2.5052 8 7 2.8091 -1.8091 1.2633 9 6 3.3278 -2.5429 0.1063 10 6 4.6656 -1.9742 -0.2907 11 8 5.1396 -1.0474 0.3318 12 7 5.3356 -2.4954 -1.3376 13 6 6.6365 -1.9429 -1.7233 14 1 6.6385 -0.8662 -1.5532 15 6 7.7367 -2.5941 -0.8822 16 6 9.0913 -1.9890 -1.2639 17 7 9.2791 -2.1273 -2.7146 18 6 10.4052 -2.7214 -3.2188 19 1 10.3721 -3.2130 -4.1799 20 6 11.5891 -2.6918 -2.4947 21 7 12.5398 -3.5651 -2.7516 22 14 11.8331 -1.4125 -1.1556 23 1 11.4556 -1.9928 0.1581 24 1 13.2583 -0.9967 -1.1219 25 1 10.9794 -0.2308 -1.4384 26 6 8.2360 -1.6158 -3.6139 27 6 6.8911 -2.2252 -3.2058 28 1 6.9140 -3.3022 -3.3722 29 6 5.7729 -1.6020 -4.0437 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 3.4429 -3.5954 0.3654 38 1 2.6309 -2.4478 -0.7264 39 1 4.9568 -3.2368 -1.8353 40 1 7.5421 -2.4126 0.1748 41 1 7.7515 -3.6676 -1.0708 42 1 9.1098 -0.9337 -0.9921 43 1 9.8881 -2.5174 -0.7403 44 1 13.3672 -3.5441 -2.2459 45 1 8.1847 -0.5299 -3.5337 46 1 8.4696 -1.8957 -4.6411 47 1 5.7517 -0.5249 -3.8777 48 1 5.9545 -1.8037 -5.0994 49 1 4.8158 -2.0337 -3.7511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943483752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:19 Heat of formation + Delta-G solvation = 97.939323 kcal Electronic energy + Delta-G solvation = -30284.871290 eV Core-core repulsion = 26285.364459 eV Total energy + Delta-G solvation = -3999.506832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.40158 -40.35718 -38.23499 -36.53371 -35.63463 -34.96402 -32.99355 -31.80291 -31.67340 -30.66980 -29.10668 -27.64756 -26.53948 -25.21817 -24.68819 -23.58353 -22.33863 -21.60334 -21.15754 -20.72526 -19.85662 -18.10831 -18.06235 -16.87712 -16.49248 -16.27283 -16.09793 -15.57644 -15.02643 -14.94416 -14.56125 -14.23840 -13.94727 -13.68977 -13.61398 -13.58806 -13.29138 -13.08872 -12.86528 -12.63600 -12.41450 -12.22697 -12.08103 -12.04731 -11.79281 -11.78269 -11.71982 -11.60923 -11.55943 -11.19784 -11.16390 -10.75019 -10.70333 -10.37312 -10.23224 -10.18173 -10.12152 -9.85794 -9.57392 -9.10711 -8.70023 -7.08736 -6.01821 -3.39113 0.95461 1.53783 2.07840 2.11798 2.79461 3.29944 3.46245 3.48109 3.52678 3.78182 4.04506 4.13821 4.30487 4.47335 4.51084 4.63319 4.77022 4.78689 4.82253 5.10523 5.15329 5.15636 5.18967 5.29549 5.32615 5.39486 5.44321 5.49398 5.53064 5.66368 5.70486 5.73445 5.82206 5.84100 5.87318 5.90764 5.94621 6.06325 6.19844 6.26121 6.45699 6.46431 6.54855 6.56664 6.78369 7.15360 7.79713 7.86809 8.24840 8.42859 8.84804 9.64150 10.00068 11.13760 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.002854 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.928971 B = 9809.736976 C =10458.172006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.145 4.145 4 C 0.202 3.798 5 N -0.301 5.301 6 N -0.073 5.073 7 N -0.084 5.084 8 N -0.294 5.294 9 C 0.090 3.910 10 C 0.497 3.503 11 O -0.517 6.517 12 N -0.710 5.710 13 C 0.158 3.842 14 H 0.085 0.915 15 C -0.143 4.143 16 C 0.129 3.871 17 N -0.606 5.606 18 C -0.264 4.264 19 H 0.087 0.913 20 C 0.026 3.974 21 N -0.907 5.907 22 Si 0.880 3.120 23 H -0.289 1.289 24 H -0.302 1.302 25 H -0.269 1.269 26 C 0.158 3.842 27 C -0.116 4.116 28 H 0.078 0.922 29 C -0.142 4.142 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.400 0.600 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.263 0.737 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.805 3.067 -1.200 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.077 4.077 5 N -0.149 5.149 6 N -0.067 5.067 7 N -0.069 5.069 8 N -0.094 5.094 9 C -0.036 4.036 10 C 0.279 3.721 11 O -0.392 6.392 12 N -0.362 5.362 13 C 0.055 3.945 14 H 0.104 0.896 15 C -0.183 4.183 16 C 0.003 3.997 17 N -0.329 5.329 18 C -0.392 4.392 19 H 0.104 0.896 20 C -0.174 4.174 21 N -0.549 5.549 22 Si 0.711 3.289 23 H -0.216 1.216 24 H -0.230 1.230 25 H -0.194 1.194 26 C 0.031 3.969 27 C -0.137 4.137 28 H 0.097 0.903 29 C -0.200 4.200 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.235 0.765 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -25.124 3.517 0.711 25.379 hybrid contribution 0.295 0.058 -0.335 0.450 sum -24.829 3.575 0.375 25.088 Atomic orbital electron populations 1.21856 0.91936 1.02647 1.03751 1.19790 0.97284 0.96627 0.89485 1.21834 1.02083 0.92960 1.03409 1.26081 0.94985 0.88591 0.98002 1.74941 1.20861 1.20751 0.98338 1.78614 1.06842 0.98873 1.22381 1.78910 1.18814 1.22021 0.87183 1.47856 1.33713 1.21017 1.06851 1.22033 0.96378 0.98826 0.86343 1.20238 0.86075 0.84190 0.81576 1.90842 1.68324 1.28103 1.51938 1.46144 1.21749 1.36878 1.31381 1.21125 0.80060 0.98769 0.94560 0.89644 1.22423 0.96166 1.01061 0.98671 1.21318 0.94776 0.97779 0.85851 1.44397 1.20075 1.68765 0.99639 1.18895 0.85881 1.28279 1.06131 0.89553 1.25264 0.95612 0.98059 0.98436 1.69825 1.07783 1.34522 1.42792 0.86988 0.76290 0.83898 0.81743 1.21632 1.23016 1.19398 1.20914 0.85933 0.95297 0.94770 1.21991 0.97537 1.01747 0.92420 0.90344 1.21775 0.97436 1.00789 1.00014 0.90915 0.90738 0.92406 0.89188 0.90854 0.91040 0.91800 0.83944 0.84440 0.76507 0.92304 0.91369 0.95379 0.90683 0.92672 0.95699 0.91230 0.92805 0.92289 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.18 37.16 0.34 -0.40 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -1.09 9.18 37.16 0.34 -0.75 16 4 C 0.20 2.20 6.64 -155.43 -1.03 1.17 16 5 N -0.30 -4.20 12.36 32.70 0.40 -3.80 16 6 N -0.07 -1.15 13.43 60.35 0.81 -0.34 16 7 N -0.08 -1.21 13.29 60.35 0.80 -0.41 16 8 N -0.29 -3.25 2.83 -59.44 -0.17 -3.42 16 9 C 0.09 0.60 6.57 -5.19 -0.03 0.57 16 10 C 0.50 5.28 7.86 -10.99 -0.09 5.20 16 11 O -0.52 -8.28 16.09 5.55 0.09 -8.19 16 12 N -0.71 -6.72 4.36 -53.77 -0.23 -6.95 16 13 C 0.16 2.16 1.88 -67.89 -0.13 2.04 16 14 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 15 C -0.14 -2.45 5.65 -26.61 -0.15 -2.60 16 16 C 0.13 2.76 4.19 -3.71 -0.02 2.74 16 17 N -0.61 -13.56 2.77 -172.32 -0.48 -14.04 16 18 C -0.26 -7.07 10.04 -15.06 -0.15 -7.22 16 19 H 0.09 2.45 8.05 -52.49 -0.42 2.03 16 20 C 0.03 0.72 5.24 -17.43 -0.09 0.63 16 21 N -0.91 -27.30 13.97 55.49 0.78 -26.52 16 22 Si 0.88 22.31 24.35 -169.99 -4.14 18.17 16 23 H -0.29 -7.17 6.70 56.52 0.38 -6.79 16 24 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 25 H -0.27 -6.70 6.45 56.52 0.36 -6.34 16 26 C 0.16 2.77 5.80 -3.72 -0.02 2.74 16 27 C -0.12 -1.52 2.46 -90.50 -0.22 -1.74 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 C -0.14 -1.37 9.03 37.16 0.34 -1.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.42 6.85 -51.93 -0.36 0.06 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.14 0.28 7.13 -51.93 -0.37 -0.09 16 39 H 0.40 2.36 8.31 -40.82 -0.34 2.02 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.03 0.62 6.98 -51.93 -0.36 0.25 16 43 H 0.08 1.79 4.50 -51.93 -0.23 1.55 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 45 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.05 0.35 7.36 -51.93 -0.38 -0.04 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -36.52 389.53 -5.44 -41.96 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -7.96 Total: -3.30 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.21 Total: 0.97 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 1.91 Total: -55.48 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.52 -5.44 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943483752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.902 kcal (2) G-P(sol) polarization free energy of solvation -36.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds