Wall clock time and date at job start Tue Mar 31 2020 21:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.50699 * 109.46848 * 119.99748 * 2 1 3 5 5 N 1.31071 * 126.66348 * 299.68711 * 4 2 1 6 6 N 1.28838 * 107.99289 * 179.89352 * 5 4 2 7 7 N 1.28742 * 109.39546 * 0.38248 * 6 5 4 8 8 N 1.29016 * 108.80894 * 359.75772 * 7 6 5 9 9 C 1.46504 * 126.43875 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47298 * 270.03138 * 9 8 7 11 11 O 1.21285 * 120.00382 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99910 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99983 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.45998 * 324.99425 * 13 12 10 15 15 C 1.53034 * 109.46355 * 84.96980 * 13 12 10 16 16 C 1.53193 * 109.31213 * 181.38795 * 15 13 12 17 17 N 1.46928 * 108.77511 * 305.36317 * 16 15 13 18 18 C 1.36940 * 120.63132 * 233.58961 * 17 16 15 19 19 H 1.07998 * 119.99945 * 152.79786 * 18 17 16 20 20 C 1.38811 * 119.99840 * 332.79892 * 18 17 16 21 21 N 1.31625 * 120.00041 * 159.75293 * 20 18 17 22 22 Si 1.86795 * 120.00219 * 339.75284 * 20 18 17 23 23 H 1.48495 * 109.47335 * 94.89394 * 22 20 18 24 24 H 1.48499 * 109.47479 * 214.89550 * 22 20 18 25 25 H 1.48501 * 109.47134 * 334.89370 * 22 20 18 26 26 C 1.46919 * 118.73958 * 53.60717 * 17 16 15 27 27 C 1.53046 * 109.46019 * 205.02604 * 13 12 10 28 28 H 1.09000 * 109.49427 * 298.56371 * 27 13 12 29 29 C 1.53004 * 109.49619 * 58.65617 * 27 13 12 30 30 H 1.08999 * 109.47226 * 300.00272 * 1 2 3 31 31 H 1.09005 * 109.47117 * 60.00197 * 1 2 3 32 32 H 1.09005 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47226 * 239.99728 * 2 1 3 34 34 H 1.08995 * 109.46895 * 299.99853 * 3 2 1 35 35 H 1.09005 * 109.46640 * 59.99876 * 3 2 1 36 36 H 1.08997 * 109.47060 * 179.97438 * 3 2 1 37 37 H 1.09003 * 109.46818 * 30.03118 * 9 8 7 38 38 H 1.09000 * 109.46982 * 150.02516 * 9 8 7 39 39 H 0.96999 * 120.00419 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.49967 * 301.33493 * 15 13 12 41 41 H 1.09000 * 109.50094 * 61.43330 * 15 13 12 42 42 H 1.08994 * 109.58897 * 65.15151 * 16 15 13 43 43 H 1.09005 * 109.58694 * 185.57727 * 16 15 13 44 44 H 0.96996 * 119.99857 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58907 * 66.18159 * 26 17 16 46 46 H 1.09002 * 109.59098 * 186.46577 * 26 17 16 47 47 H 1.08997 * 109.47180 * 60.00480 * 29 27 13 48 48 H 1.09002 * 109.46735 * 180.02562 * 29 27 13 49 49 H 1.09001 * 109.47305 * 299.99868 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.8022 -0.3750 2.4765 6 7 2.3997 -1.2279 3.2351 7 7 3.0117 -2.0941 2.5052 8 7 2.8091 -1.8091 1.2633 9 6 3.3278 -2.5429 0.1063 10 6 4.6656 -1.9742 -0.2907 11 8 5.1396 -1.0474 0.3318 12 7 5.3356 -2.4954 -1.3376 13 6 6.6365 -1.9429 -1.7233 14 1 6.6385 -0.8662 -1.5532 15 6 7.7367 -2.5941 -0.8822 16 6 9.0913 -1.9890 -1.2639 17 7 9.2791 -2.1273 -2.7146 18 6 10.4052 -2.7214 -3.2188 19 1 10.3721 -3.2130 -4.1799 20 6 11.5891 -2.6918 -2.4947 21 7 12.5398 -3.5651 -2.7516 22 14 11.8331 -1.4125 -1.1556 23 1 11.4556 -1.9928 0.1581 24 1 13.2583 -0.9967 -1.1219 25 1 10.9794 -0.2308 -1.4384 26 6 8.2360 -1.6158 -3.6139 27 6 6.8911 -2.2252 -3.2058 28 1 6.9140 -3.3022 -3.3722 29 6 5.7729 -1.6020 -4.0437 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 3.4429 -3.5954 0.3654 38 1 2.6309 -2.4478 -0.7264 39 1 4.9568 -3.2368 -1.8353 40 1 7.5421 -2.4126 0.1748 41 1 7.7515 -3.6676 -1.0708 42 1 9.1098 -0.9337 -0.9921 43 1 9.8881 -2.5174 -0.7403 44 1 13.3672 -3.5441 -2.2459 45 1 8.1847 -0.5299 -3.5337 46 1 8.4696 -1.8957 -4.6411 47 1 5.7517 -0.5249 -3.8777 48 1 5.9545 -1.8037 -5.0994 49 1 4.8158 -2.0337 -3.7511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943483752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:18 Heat of formation + Delta-G solvation = 70.147139 kcal Electronic energy + Delta-G solvation = -30286.076450 eV Core-core repulsion = 26285.364459 eV Total energy + Delta-G solvation = -4000.711991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.29708 -41.34146 -39.52962 -37.17494 -36.57621 -36.25360 -34.35497 -33.38629 -32.62820 -32.08899 -30.01641 -28.10849 -27.80985 -26.76022 -25.48504 -24.66445 -23.65277 -23.09162 -21.98975 -21.56814 -21.05041 -19.08549 -18.85878 -18.68650 -17.54270 -17.40879 -16.89010 -16.67027 -16.31617 -16.12487 -15.57755 -15.28665 -15.20646 -15.06691 -14.71527 -14.46432 -14.32774 -14.19244 -13.93647 -13.78083 -13.56842 -13.33469 -13.19010 -13.09453 -12.82154 -12.72734 -12.67924 -12.49479 -12.29870 -12.27740 -12.23523 -12.13746 -11.93425 -11.88813 -11.78099 -11.51128 -11.39688 -11.19986 -10.96984 -10.76469 -10.16705 -8.99569 -8.20871 -5.51778 0.08985 0.84900 1.13305 1.24287 1.32442 1.35746 1.42397 1.98090 2.35868 2.88377 3.00595 3.15712 3.27362 3.42460 3.61540 3.67550 3.87117 3.91504 4.02185 4.05985 4.10039 4.18671 4.19812 4.36805 4.37958 4.56065 4.60890 4.64686 4.71785 4.77730 4.80485 4.83701 4.87134 4.89204 4.91596 4.95638 5.07004 5.13364 5.15137 5.17466 5.28469 5.33190 5.37114 5.40613 5.55747 5.83325 6.09968 6.37674 6.86888 7.05743 7.48286 7.57912 7.98842 8.98682 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.002854 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.928971 B = 9809.736976 C =10458.172006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.209 3.791 5 N -0.331 5.331 6 N -0.110 5.110 7 N -0.106 5.106 8 N -0.291 5.291 9 C 0.087 3.913 10 C 0.499 3.501 11 O -0.575 6.575 12 N -0.691 5.691 13 C 0.170 3.830 14 H 0.068 0.932 15 C -0.133 4.133 16 C 0.125 3.875 17 N -0.619 5.619 18 C -0.241 4.241 19 H 0.065 0.935 20 C -0.030 4.030 21 N -0.953 5.953 22 Si 0.934 3.066 23 H -0.286 1.286 24 H -0.310 1.310 25 H -0.264 1.264 26 C 0.148 3.852 27 C -0.102 4.102 28 H 0.082 0.918 29 C -0.135 4.135 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.036 0.964 37 H 0.174 0.826 38 H 0.198 0.802 39 H 0.424 0.576 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.021 0.979 43 H 0.046 0.954 44 H 0.261 0.739 45 H 0.029 0.971 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.066 0.934 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.689 2.836 -3.167 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.201 4.201 4 C -0.069 4.069 5 N -0.180 5.180 6 N -0.103 5.103 7 N -0.092 5.092 8 N -0.092 5.092 9 C -0.036 4.036 10 C 0.284 3.716 11 O -0.454 6.454 12 N -0.343 5.343 13 C 0.065 3.935 14 H 0.086 0.914 15 C -0.173 4.173 16 C 0.000 4.000 17 N -0.343 5.343 18 C -0.371 4.371 19 H 0.083 0.917 20 C -0.225 4.225 21 N -0.599 5.599 22 Si 0.764 3.236 23 H -0.214 1.214 24 H -0.239 1.239 25 H -0.189 1.189 26 C 0.023 3.977 27 C -0.122 4.122 28 H 0.101 0.899 29 C -0.192 4.192 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.191 0.809 38 H 0.215 0.785 39 H 0.263 0.737 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -29.085 3.269 -1.284 29.296 hybrid contribution 1.462 0.145 0.176 1.480 sum -27.623 3.414 -1.108 27.855 Atomic orbital electron populations 1.21854 0.90350 1.03410 1.04121 1.20136 0.98443 0.95806 0.88758 1.21826 1.00297 0.93908 1.04092 1.26836 0.93702 0.88069 0.98288 1.74848 1.21890 1.21328 0.99942 1.78570 1.08150 0.99882 1.23734 1.78792 1.19185 1.22415 0.88785 1.48131 1.33164 1.21183 1.06752 1.22565 0.94990 0.99369 0.86688 1.20859 0.87093 0.83101 0.80544 1.90847 1.70002 1.30838 1.53716 1.45743 1.19916 1.37222 1.31423 1.20686 0.80964 0.97544 0.94269 0.91416 1.22249 0.95080 1.01045 0.98958 1.21241 0.96474 0.97232 0.85101 1.44535 1.19965 1.69040 1.00728 1.18918 0.87073 1.26340 1.04738 0.91738 1.25781 0.95930 0.99788 1.00986 1.69928 1.08531 1.36559 1.44914 0.86118 0.75484 0.82036 0.79965 1.21360 1.23886 1.18897 1.21198 0.86861 0.95709 0.93932 1.21780 0.96124 1.01878 0.92421 0.89920 1.21738 0.97304 1.00532 0.99670 0.92844 0.88096 0.91456 0.85586 0.87911 0.92696 0.94450 0.80889 0.78497 0.73700 0.92947 0.91126 0.96096 0.93550 0.93001 0.95339 0.91338 0.93059 0.91520 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.18 71.98 0.66 -0.26 16 2 C -0.01 -0.10 3.26 -11.54 -0.04 -0.14 16 3 C -0.14 -1.86 9.18 71.98 0.66 -1.19 16 4 C 0.21 4.14 6.64 138.13 0.92 5.05 16 5 N -0.33 -9.23 12.36 -50.45 -0.62 -9.85 16 6 N -0.11 -3.49 13.43 37.01 0.50 -2.99 16 7 N -0.11 -2.96 13.29 37.02 0.49 -2.47 16 8 N -0.29 -5.68 2.83 -341.98 -0.97 -6.65 16 9 C 0.09 0.73 6.57 85.63 0.56 1.29 16 10 C 0.50 8.76 7.86 87.65 0.69 9.44 16 11 O -0.58 -17.51 16.09 -3.04 -0.05 -17.56 16 12 N -0.69 -9.98 4.36 -442.40 -1.93 -11.91 16 13 C 0.17 4.20 1.88 45.02 0.08 4.29 16 14 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 15 C -0.13 -4.39 5.65 30.67 0.17 -4.22 16 16 C 0.13 5.35 4.19 86.36 0.36 5.72 16 17 N -0.62 -27.53 2.77 -699.11 -1.94 -29.47 16 18 C -0.24 -13.11 10.04 84.03 0.84 -12.27 16 19 H 0.06 3.75 8.05 -2.91 -0.02 3.72 16 20 C -0.03 -1.73 5.24 84.86 0.44 -1.28 16 21 N -0.95 -59.21 13.97 21.65 0.30 -58.90 16 22 Si 0.93 47.55 24.35 68.60 1.67 49.22 16 23 H -0.29 -14.25 6.70 99.48 0.67 -13.58 16 24 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 25 H -0.26 -13.03 6.45 99.48 0.64 -12.39 16 26 C 0.15 4.96 5.80 86.36 0.50 5.46 16 27 C -0.10 -2.32 2.46 -10.71 -0.03 -2.35 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 C -0.13 -1.91 9.03 71.98 0.65 -1.27 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 0.17 8.14 -2.38 -0.02 0.15 16 32 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.13 0.38 6.85 -2.39 -0.02 0.36 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 37 H 0.17 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.20 -0.73 7.13 -2.39 -0.02 -0.75 16 39 H 0.42 2.38 8.31 -92.71 -0.77 1.61 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.02 0.92 6.98 -2.39 -0.02 0.91 16 43 H 0.05 2.24 4.50 -2.38 -0.01 2.23 16 44 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 47 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 0.63 7.36 -2.39 -0.02 0.61 16 Total: -1.00 -87.66 389.53 4.02 -83.64 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: 0.08 Total: -1.35 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 6.48 Total: 8.28 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -4.17 Total: -122.24 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.05 Total: -17.56 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.67 Total: 49.22 kcal Total: -87.66 4.02 -83.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943483752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.789 kcal (2) G-P(sol) polarization free energy of solvation -87.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds