Wall clock time and date at job start Tue Mar 31 2020 21:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.70248 * 2 1 4 4 C 1.53626 * 109.66379 * 120.58482 * 2 1 3 5 5 C 1.53036 * 109.24126 * 174.54776 * 4 2 1 6 6 H 1.08998 * 109.45941 * 58.54123 * 5 4 2 7 7 N 1.46511 * 109.44665 * 178.49992 * 5 4 2 8 8 C 1.34777 * 119.99808 * 205.06453 * 7 5 4 9 9 O 1.21535 * 119.99890 * 359.97438 * 8 7 5 10 10 C 1.48002 * 119.99846 * 180.02562 * 8 7 5 11 11 N 1.34194 * 126.69915 * 0.02562 * 10 8 7 12 12 N 1.28980 * 107.25077 * 180.02562 * 11 10 8 13 13 N 1.28722 * 108.98993 * 359.97438 * 12 11 10 14 14 C 1.46501 * 125.31898 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47224 * 0.03200 * 14 13 12 16 16 C 1.53002 * 109.46809 * 120.02877 * 14 13 12 17 17 C 1.52996 * 109.47338 * 240.02895 * 14 13 12 18 18 N 1.28873 * 109.35763 * 359.72989 * 13 12 11 19 19 C 1.53039 * 109.54094 * 298.51196 * 5 4 2 20 20 C 1.53194 * 109.30955 * 61.36698 * 19 5 4 21 21 N 1.46919 * 108.77599 * 305.36645 * 20 19 5 22 22 C 1.36944 * 120.63155 * 233.58594 * 21 20 19 23 23 H 1.07998 * 120.00218 * 149.69824 * 22 21 20 24 24 C 1.38808 * 119.99739 * 329.70445 * 22 21 20 25 25 N 1.31622 * 120.00405 * 145.04924 * 24 22 21 26 26 Si 1.86803 * 119.99880 * 325.04490 * 24 22 21 27 27 H 1.48498 * 109.47163 * 270.00264 * 26 24 22 28 28 H 1.48504 * 109.47083 * 30.00442 * 26 24 22 29 29 H 1.48499 * 109.47281 * 150.00395 * 26 24 22 30 30 H 1.08999 * 109.47021 * 180.35450 * 1 2 3 31 31 H 1.08994 * 109.47311 * 300.35935 * 1 2 3 32 32 H 1.09005 * 109.46654 * 60.35998 * 1 2 3 33 33 H 1.09007 * 109.63306 * 54.56159 * 4 2 1 34 34 H 1.08997 * 109.43655 * 294.42175 * 4 2 1 35 35 H 0.96995 * 119.99736 * 25.06190 * 7 5 4 36 36 H 1.09002 * 109.47322 * 59.99712 * 15 14 13 37 37 H 1.08999 * 109.47114 * 179.97438 * 15 14 13 38 38 H 1.09005 * 109.46498 * 299.99464 * 15 14 13 39 39 H 1.08994 * 109.47424 * 59.99984 * 16 14 13 40 40 H 1.08999 * 109.47091 * 180.02562 * 16 14 13 41 41 H 1.09002 * 109.47207 * 299.99963 * 16 14 13 42 42 H 1.08996 * 109.47096 * 59.99443 * 17 14 13 43 43 H 1.08999 * 109.47166 * 180.02562 * 17 14 13 44 44 H 1.09006 * 109.46629 * 300.00370 * 17 14 13 45 45 H 1.09001 * 109.49798 * 301.41625 * 19 5 4 46 46 H 1.08996 * 109.49750 * 181.31714 * 19 5 4 47 47 H 1.08997 * 109.58568 * 185.57741 * 20 19 5 48 48 H 1.08999 * 109.70466 * 65.22353 * 20 19 5 49 49 H 0.96997 * 119.99367 * 355.09258 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7361 1.2454 5 6 3.5711 -0.8497 1.1677 6 1 4.0065 0.1472 1.0992 7 7 4.0723 -1.5194 2.3706 8 6 5.3359 -1.3021 2.7858 9 8 6.0598 -0.5509 2.1622 10 6 5.8424 -1.9790 4.0006 11 7 5.1647 -2.8306 4.7856 12 7 5.9607 -3.1930 5.7336 13 7 7.0963 -2.6085 5.5734 14 6 8.2606 -2.7654 6.4485 15 6 7.9189 -3.7330 7.5834 16 6 9.4347 -3.3216 5.6404 17 6 8.6443 -1.4057 7.0357 18 7 7.0505 -1.8676 4.5198 19 6 3.9615 -1.6628 -0.0686 20 6 3.4657 -0.9421 -1.3262 21 7 2.0227 -0.6996 -1.1944 22 6 1.1538 -1.1128 -2.1689 23 1 0.1432 -1.3911 -1.9087 24 6 1.5720 -1.1740 -3.4910 25 7 1.1164 -2.1220 -4.2823 26 14 2.7814 0.0893 -4.1475 27 1 2.0355 1.2499 -4.6969 28 1 3.6666 0.5462 -3.0461 29 1 3.6037 -0.5239 -5.2213 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8933 33 1 1.6096 -1.7336 1.2892 34 1 1.7688 -0.1770 2.1387 35 1 3.4946 -2.1191 2.8680 36 1 7.6456 -4.7017 7.1651 37 1 8.7853 -3.8501 8.2343 38 1 7.0824 -3.3367 8.1592 39 1 9.6782 -2.6324 4.8319 40 1 10.3009 -3.4388 6.2916 41 1 9.1614 -4.2904 5.2221 42 1 7.8079 -1.0095 7.6113 43 1 9.5109 -1.5225 7.6865 44 1 8.8878 -0.7165 6.2271 45 1 3.5061 -2.6515 -0.0125 46 1 5.0460 -1.7631 -0.1105 47 1 3.6532 -1.5639 -2.2016 48 1 3.9875 0.0087 -1.4348 49 1 0.5448 -2.8192 -3.9244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947334816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:16 Heat of formation + Delta-G solvation = 112.137165 kcal Electronic energy + Delta-G solvation = -29637.393034 eV Core-core repulsion = 25638.501867 eV Total energy + Delta-G solvation = -3998.891167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.67353 -39.85526 -38.15624 -37.75536 -34.84054 -33.75495 -32.88409 -32.36070 -31.57385 -30.01940 -28.23586 -28.17800 -26.60925 -25.71551 -24.76689 -23.99687 -22.38121 -21.42349 -21.06278 -20.28171 -19.45166 -18.12341 -17.65862 -17.12985 -16.88406 -16.06260 -15.11517 -15.01653 -14.81462 -14.61360 -14.56429 -14.27044 -13.98417 -13.60874 -13.52202 -13.39782 -13.23491 -13.11268 -12.99414 -12.65824 -12.49569 -12.47193 -12.13848 -11.94404 -11.76309 -11.61805 -11.32691 -11.30343 -11.25600 -11.02160 -10.87928 -10.61099 -10.46792 -10.41070 -10.30882 -10.21635 -9.91048 -9.53407 -9.14898 -8.87033 -8.23447 -6.93079 -6.28984 -3.22325 0.79661 1.28371 1.36230 2.75084 3.05406 3.57450 3.59383 3.63170 3.77347 3.87856 3.88791 4.00177 4.35438 4.70960 4.78769 4.81089 4.82216 4.94527 4.97747 5.01216 5.03150 5.03734 5.18459 5.29422 5.31299 5.40002 5.42817 5.46626 5.58261 5.65065 5.80206 5.82359 6.02549 6.03652 6.17537 6.24800 6.29575 6.42137 6.43907 6.55174 6.65936 6.83861 6.88455 6.99809 7.09926 7.41004 7.93380 8.08797 8.15886 8.51600 9.08152 9.70183 10.30358 11.09655 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.002363 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.603651 B =11844.581686 C =12287.720973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.170 3.830 3 H 0.030 0.970 4 C -0.135 4.135 5 C 0.152 3.848 6 H 0.087 0.913 7 N -0.699 5.699 8 C 0.613 3.387 9 O -0.509 6.509 10 C 0.129 3.871 11 N -0.257 5.257 12 N -0.057 5.057 13 N -0.126 5.126 14 C 0.176 3.824 15 C -0.153 4.153 16 C -0.161 4.161 17 C -0.160 4.160 18 N -0.246 5.246 19 C -0.145 4.145 20 C 0.146 3.854 21 N -0.595 5.595 22 C -0.357 4.357 23 H 0.070 0.930 24 C 0.004 3.996 25 N -0.901 5.901 26 Si 1.013 2.987 27 H -0.298 1.298 28 H -0.268 1.268 29 H -0.295 1.295 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.407 0.593 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.033 0.967 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.595 -1.796 26.131 29.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.063 3.937 3 H 0.048 0.952 4 C -0.175 4.175 5 C 0.050 3.950 6 H 0.105 0.895 7 N -0.350 5.350 8 C 0.392 3.608 9 O -0.380 6.380 10 C -0.155 4.155 11 N -0.132 5.132 12 N -0.049 5.049 13 N -0.041 5.041 14 C 0.096 3.904 15 C -0.211 4.211 16 C -0.219 4.219 17 C -0.219 4.219 18 N -0.099 5.099 19 C -0.186 4.186 20 C 0.020 3.980 21 N -0.320 5.320 22 C -0.485 4.485 23 H 0.087 0.913 24 C -0.200 4.200 25 N -0.538 5.538 26 Si 0.842 3.158 27 H -0.226 1.226 28 H -0.194 1.194 29 H -0.222 1.222 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.242 0.758 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.051 0.949 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.866 -1.125 24.783 29.448 hybrid contribution -0.998 -0.573 1.240 1.692 sum 14.868 -1.698 26.023 30.019 Atomic orbital electron populations 1.21753 0.95279 1.01616 1.00354 1.20498 0.93543 0.93332 0.86332 0.95223 1.22471 0.92983 1.02192 0.99856 1.21163 0.94728 0.96666 0.82468 0.89460 1.46065 1.11939 1.47831 1.29124 1.16158 0.82844 0.81055 0.80749 1.90858 1.56403 1.35919 1.54839 1.25480 0.88507 1.00719 1.00786 1.76142 1.24095 1.11688 1.01256 1.78867 0.90921 1.16754 1.18392 1.50760 1.11828 1.25259 1.16262 1.21529 0.80612 0.99482 0.88793 1.22113 1.03847 0.98933 0.96228 1.22269 0.96039 1.02411 1.01225 1.22264 1.03265 0.93937 1.02421 1.74997 1.21029 1.14361 0.99476 1.22502 1.00117 1.00068 0.95888 1.21362 0.84721 0.97091 0.94857 1.44499 1.02194 1.65263 1.20029 1.20029 0.97111 1.43969 0.87407 0.91265 1.26147 1.01237 1.00147 0.92463 1.70897 1.32745 1.10348 1.39801 0.84659 0.77068 0.77695 0.76361 1.22624 1.19384 1.22188 0.92720 0.94217 0.91748 0.91299 0.92204 0.75790 0.90457 0.89044 0.90477 0.90136 0.88913 0.91232 0.91271 0.88908 0.90167 0.91717 0.92349 0.91274 0.94891 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.96 37.16 0.30 -2.12 16 2 C 0.17 3.29 3.51 -67.37 -0.24 3.05 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.14 -2.18 4.86 -26.39 -0.13 -2.31 16 5 C 0.15 2.53 2.41 -67.89 -0.16 2.37 16 6 H 0.09 1.55 7.57 -51.93 -0.39 1.16 16 7 N -0.70 -10.24 5.07 -54.66 -0.28 -10.51 16 8 C 0.61 9.83 7.80 -12.26 -0.10 9.73 16 9 O -0.51 -9.66 16.76 5.33 0.09 -9.57 16 10 C 0.13 1.89 8.14 -156.24 -1.27 0.62 16 11 N -0.26 -3.53 12.26 32.10 0.39 -3.13 16 12 N -0.06 -0.68 12.21 60.35 0.74 0.05 16 13 N -0.13 -1.35 3.72 0.52 0.00 -1.35 16 14 C 0.18 1.09 1.30 -131.82 -0.17 0.92 16 15 C -0.15 -0.63 7.90 37.16 0.29 -0.34 16 16 C -0.16 -0.81 8.66 37.16 0.32 -0.49 16 17 C -0.16 -0.78 8.67 37.16 0.32 -0.45 16 18 N -0.25 -3.31 11.85 32.11 0.38 -2.93 16 19 C -0.15 -2.72 5.65 -26.61 -0.15 -2.87 16 20 C 0.15 3.21 4.38 -3.71 -0.02 3.19 16 21 N -0.60 -13.80 2.67 -164.53 -0.44 -14.24 16 22 C -0.36 -9.60 8.67 -15.06 -0.13 -9.73 16 23 H 0.07 1.96 6.45 -52.49 -0.34 1.63 16 24 C 0.00 0.12 4.83 -17.43 -0.08 0.03 16 25 N -0.90 -27.35 13.70 55.49 0.76 -26.59 16 26 Si 1.01 25.35 27.08 -169.99 -4.60 20.74 16 27 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.27 -6.22 4.73 56.52 0.27 -5.95 16 29 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 30 H 0.05 1.05 7.44 -51.93 -0.39 0.66 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.28 7.63 -51.93 -0.40 0.89 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.41 5.21 8.35 -40.82 -0.34 4.87 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.07 1.64 6.00 -51.93 -0.31 1.33 16 48 H 0.03 0.73 6.54 -51.93 -0.34 0.39 16 49 H 0.27 8.01 8.73 -40.82 -0.36 7.65 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -33.09 389.86 -6.43 -39.52 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -8.13 Total: 0.54 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.22 Total: 1.60 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 1.56 Total: -58.70 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.60 Total: 20.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.09 -6.43 -39.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947334816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.658 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds