Wall clock time and date at job start Tue Mar 31 2020 21:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.70248 * 2 1 4 4 C 1.53626 * 109.66379 * 120.58482 * 2 1 3 5 5 C 1.53036 * 109.24126 * 174.54776 * 4 2 1 6 6 H 1.08998 * 109.45941 * 58.54123 * 5 4 2 7 7 N 1.46511 * 109.44665 * 178.49992 * 5 4 2 8 8 C 1.34777 * 119.99808 * 205.06453 * 7 5 4 9 9 O 1.21535 * 119.99890 * 359.97438 * 8 7 5 10 10 C 1.48002 * 119.99846 * 180.02562 * 8 7 5 11 11 N 1.34194 * 126.69915 * 0.02562 * 10 8 7 12 12 N 1.28980 * 107.25077 * 180.02562 * 11 10 8 13 13 N 1.28722 * 108.98993 * 359.97438 * 12 11 10 14 14 C 1.46501 * 125.31898 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47224 * 0.03200 * 14 13 12 16 16 C 1.53002 * 109.46809 * 120.02877 * 14 13 12 17 17 C 1.52996 * 109.47338 * 240.02895 * 14 13 12 18 18 N 1.28873 * 109.35763 * 359.72989 * 13 12 11 19 19 C 1.53039 * 109.54094 * 298.51196 * 5 4 2 20 20 C 1.53194 * 109.30955 * 61.36698 * 19 5 4 21 21 N 1.46919 * 108.77599 * 305.36645 * 20 19 5 22 22 C 1.36944 * 120.63155 * 233.58594 * 21 20 19 23 23 H 1.07998 * 120.00218 * 149.69824 * 22 21 20 24 24 C 1.38808 * 119.99739 * 329.70445 * 22 21 20 25 25 N 1.31622 * 120.00405 * 145.04924 * 24 22 21 26 26 Si 1.86803 * 119.99880 * 325.04490 * 24 22 21 27 27 H 1.48498 * 109.47163 * 270.00264 * 26 24 22 28 28 H 1.48504 * 109.47083 * 30.00442 * 26 24 22 29 29 H 1.48499 * 109.47281 * 150.00395 * 26 24 22 30 30 H 1.08999 * 109.47021 * 180.35450 * 1 2 3 31 31 H 1.08994 * 109.47311 * 300.35935 * 1 2 3 32 32 H 1.09005 * 109.46654 * 60.35998 * 1 2 3 33 33 H 1.09007 * 109.63306 * 54.56159 * 4 2 1 34 34 H 1.08997 * 109.43655 * 294.42175 * 4 2 1 35 35 H 0.96995 * 119.99736 * 25.06190 * 7 5 4 36 36 H 1.09002 * 109.47322 * 59.99712 * 15 14 13 37 37 H 1.08999 * 109.47114 * 179.97438 * 15 14 13 38 38 H 1.09005 * 109.46498 * 299.99464 * 15 14 13 39 39 H 1.08994 * 109.47424 * 59.99984 * 16 14 13 40 40 H 1.08999 * 109.47091 * 180.02562 * 16 14 13 41 41 H 1.09002 * 109.47207 * 299.99963 * 16 14 13 42 42 H 1.08996 * 109.47096 * 59.99443 * 17 14 13 43 43 H 1.08999 * 109.47166 * 180.02562 * 17 14 13 44 44 H 1.09006 * 109.46629 * 300.00370 * 17 14 13 45 45 H 1.09001 * 109.49798 * 301.41625 * 19 5 4 46 46 H 1.08996 * 109.49750 * 181.31714 * 19 5 4 47 47 H 1.08997 * 109.58568 * 185.57741 * 20 19 5 48 48 H 1.08999 * 109.70466 * 65.22353 * 20 19 5 49 49 H 0.96997 * 119.99367 * 355.09258 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7361 1.2454 5 6 3.5711 -0.8497 1.1677 6 1 4.0065 0.1472 1.0992 7 7 4.0723 -1.5194 2.3706 8 6 5.3359 -1.3021 2.7858 9 8 6.0598 -0.5509 2.1622 10 6 5.8424 -1.9790 4.0006 11 7 5.1647 -2.8306 4.7856 12 7 5.9607 -3.1930 5.7336 13 7 7.0963 -2.6085 5.5734 14 6 8.2606 -2.7654 6.4485 15 6 7.9189 -3.7330 7.5834 16 6 9.4347 -3.3216 5.6404 17 6 8.6443 -1.4057 7.0357 18 7 7.0505 -1.8676 4.5198 19 6 3.9615 -1.6628 -0.0686 20 6 3.4657 -0.9421 -1.3262 21 7 2.0227 -0.6996 -1.1944 22 6 1.1538 -1.1128 -2.1689 23 1 0.1432 -1.3911 -1.9087 24 6 1.5720 -1.1740 -3.4910 25 7 1.1164 -2.1220 -4.2823 26 14 2.7814 0.0893 -4.1475 27 1 2.0355 1.2499 -4.6969 28 1 3.6666 0.5462 -3.0461 29 1 3.6037 -0.5239 -5.2213 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8933 33 1 1.6096 -1.7336 1.2892 34 1 1.7688 -0.1770 2.1387 35 1 3.4946 -2.1191 2.8680 36 1 7.6456 -4.7017 7.1651 37 1 8.7853 -3.8501 8.2343 38 1 7.0824 -3.3367 8.1592 39 1 9.6782 -2.6324 4.8319 40 1 10.3009 -3.4388 6.2916 41 1 9.1614 -4.2904 5.2221 42 1 7.8079 -1.0095 7.6113 43 1 9.5109 -1.5225 7.6865 44 1 8.8878 -0.7165 6.2271 45 1 3.5061 -2.6515 -0.0125 46 1 5.0460 -1.7631 -0.1105 47 1 3.6532 -1.5639 -2.2016 48 1 3.9875 0.0087 -1.4348 49 1 0.5448 -2.8192 -3.9244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947334816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:14 Heat of formation + Delta-G solvation = 88.693204 kcal Electronic energy + Delta-G solvation = -29638.409640 eV Core-core repulsion = 25638.501867 eV Total energy + Delta-G solvation = -3999.907773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.63010 -41.17865 -39.43836 -38.62243 -36.34077 -34.73524 -34.37803 -33.73779 -33.13548 -31.66545 -28.66346 -28.55069 -28.13237 -26.94669 -25.71338 -25.58927 -24.07595 -22.73207 -21.97390 -21.56691 -21.09849 -19.34789 -18.82459 -18.57623 -17.76196 -17.41803 -16.61505 -16.38793 -16.23881 -15.59591 -15.42450 -15.28918 -15.16715 -15.13020 -15.00497 -14.81183 -14.34310 -14.05946 -13.80116 -13.49619 -13.32241 -13.30399 -13.24136 -12.86014 -12.77872 -12.69234 -12.65975 -12.43958 -12.38672 -12.33556 -12.13816 -12.12887 -12.00581 -11.78564 -11.73276 -11.56137 -11.49943 -11.38274 -11.07633 -10.35478 -10.25000 -8.94638 -8.46397 -5.36656 -0.19326 0.22035 0.61319 1.55614 1.57513 1.62556 1.76934 1.84537 2.64336 2.74837 2.91873 3.01479 3.43408 3.47068 3.55178 3.62486 3.76531 3.92777 3.97186 4.18488 4.26966 4.27517 4.39854 4.51343 4.51766 4.56379 4.59167 4.60867 4.61568 4.70334 4.71667 4.71959 4.87485 4.97366 5.01035 5.01211 5.04709 5.08456 5.09852 5.15904 5.20946 5.21849 5.33041 5.46021 5.56569 6.01055 6.19751 6.37348 6.80845 6.97629 7.00980 7.70924 8.22744 8.89109 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.002363 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.603651 B =11844.581686 C =12287.720973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.160 3.840 3 H 0.040 0.960 4 C -0.122 4.122 5 C 0.162 3.838 6 H 0.083 0.917 7 N -0.685 5.685 8 C 0.617 3.383 9 O -0.542 6.542 10 C 0.114 3.886 11 N -0.267 5.267 12 N -0.057 5.057 13 N -0.109 5.109 14 C 0.159 3.841 15 C -0.150 4.150 16 C -0.159 4.159 17 C -0.157 4.157 18 N -0.257 5.257 19 C -0.135 4.135 20 C 0.143 3.857 21 N -0.609 5.609 22 C -0.331 4.331 23 H 0.047 0.953 24 C -0.050 4.050 25 N -0.942 5.942 26 Si 1.052 2.948 27 H -0.297 1.297 28 H -0.241 1.241 29 H -0.305 1.305 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.418 0.582 36 H 0.069 0.931 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.130 0.870 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.129 0.871 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.037 0.963 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.328 -1.186 29.776 33.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.161 4.161 5 C 0.058 3.942 6 H 0.101 0.899 7 N -0.336 5.336 8 C 0.398 3.602 9 O -0.416 6.416 10 C -0.170 4.170 11 N -0.141 5.141 12 N -0.049 5.049 13 N -0.026 5.026 14 C 0.081 3.919 15 C -0.208 4.208 16 C -0.217 4.217 17 C -0.216 4.216 18 N -0.111 5.111 19 C -0.175 4.175 20 C 0.017 3.983 21 N -0.334 5.334 22 C -0.460 4.460 23 H 0.065 0.935 24 C -0.248 4.248 25 N -0.583 5.583 26 Si 0.879 3.121 27 H -0.225 1.225 28 H -0.166 1.166 29 H -0.232 1.232 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.256 0.744 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.148 0.852 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.591 -0.517 28.501 33.497 hybrid contribution -1.479 -0.803 0.305 1.710 sum 16.113 -1.319 28.806 33.032 Atomic orbital electron populations 1.21682 0.94563 1.00905 1.01168 1.20789 0.94274 0.93797 0.85721 0.94215 1.22301 0.92176 1.02226 0.99431 1.20922 0.95113 0.96016 0.82145 0.89934 1.45811 1.11811 1.47623 1.28397 1.16250 0.82684 0.80472 0.80824 1.90838 1.57262 1.37452 1.56046 1.25152 0.89180 1.01702 1.00937 1.76106 1.24690 1.11773 1.01524 1.78802 0.91357 1.16802 1.17959 1.51341 1.12331 1.23447 1.15464 1.22233 0.79621 1.01081 0.89003 1.22184 1.05299 0.97647 0.95638 1.22318 0.96766 1.01242 1.01354 1.22310 1.04504 0.92511 1.02227 1.74962 1.20728 1.15048 1.00390 1.22319 1.00022 0.99617 0.95556 1.21324 0.84227 0.97122 0.95612 1.44622 1.02228 1.66107 1.20426 1.19923 0.96572 1.41408 0.88096 0.93509 1.27022 1.03156 1.01187 0.93450 1.70997 1.35159 1.11685 1.40448 0.84125 0.75850 0.75724 0.76400 1.22543 1.16564 1.23221 0.94223 0.90183 0.94105 0.91432 0.88741 0.74436 0.91233 0.85436 0.91017 0.91876 0.85205 0.92061 0.91809 0.85233 0.91859 0.92329 0.92147 0.93668 0.94482 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 7.96 71.98 0.57 -3.81 16 2 C 0.16 5.85 3.51 45.12 0.16 6.01 16 3 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 4 C -0.12 -3.58 4.86 30.82 0.15 -3.43 16 5 C 0.16 5.03 2.41 45.01 0.11 5.14 16 6 H 0.08 2.74 7.57 -2.39 -0.02 2.72 16 7 N -0.69 -18.82 5.07 -445.12 -2.26 -21.07 16 8 C 0.62 19.13 7.80 86.83 0.68 19.80 16 9 O -0.54 -20.20 16.76 -3.83 -0.06 -20.26 16 10 C 0.11 3.23 8.14 137.15 1.12 4.34 16 11 N -0.27 -7.00 12.26 -52.36 -0.64 -7.64 16 12 N -0.06 -1.30 12.21 37.02 0.45 -0.85 16 13 N -0.11 -2.18 3.72 -152.25 -0.57 -2.75 16 14 C 0.16 1.60 1.30 3.60 0.00 1.61 16 15 C -0.15 -0.79 7.90 71.98 0.57 -0.22 16 16 C -0.16 -1.24 8.66 71.98 0.62 -0.61 16 17 C -0.16 -1.12 8.67 71.98 0.62 -0.50 16 18 N -0.26 -6.72 11.85 -52.31 -0.62 -7.34 16 19 C -0.13 -4.92 5.65 30.67 0.17 -4.74 16 20 C 0.14 6.19 4.38 86.36 0.38 6.57 16 21 N -0.61 -27.84 2.67 -674.44 -1.80 -29.63 16 22 C -0.33 -18.03 8.67 84.03 0.73 -17.30 16 23 H 0.05 2.74 6.45 -2.91 -0.02 2.72 16 24 C -0.05 -2.93 4.83 84.86 0.41 -2.52 16 25 N -0.94 -59.31 13.70 21.65 0.30 -59.01 16 26 Si 1.05 52.17 27.08 68.60 1.86 54.03 16 27 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 28 H -0.24 -10.75 4.73 99.48 0.47 -10.28 16 29 H -0.30 -15.52 7.11 99.48 0.71 -14.82 16 30 H 0.04 1.48 7.44 -2.39 -0.02 1.46 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.04 1.59 7.63 -2.38 -0.02 1.57 16 33 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.42 9.79 8.35 -92.71 -0.77 9.02 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.04 2.16 6.00 -2.39 -0.01 2.15 16 48 H 0.04 1.59 6.54 -2.39 -0.02 1.57 16 49 H 0.25 15.96 8.73 -92.71 -0.81 15.15 16 Total: -1.00 -74.45 389.86 2.86 -71.59 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -0.09 Total: 12.60 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 6.29 Total: 10.35 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -5.14 Total: -128.31 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.06 Total: -20.26 kcal Atomic # 14 Polarization: 52.17 SS G_CDS: 1.86 Total: 54.03 kcal Total: -74.45 2.86 -71.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947334816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.283 kcal (2) G-P(sol) polarization free energy of solvation -74.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds