Wall clock time and date at job start Tue Mar 31 2020 21:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.70374 * 2 1 4 4 C 1.53201 * 109.58278 * 120.35864 * 2 1 3 5 5 C 1.53042 * 109.31115 * 174.42072 * 4 2 1 6 6 H 1.08995 * 109.46266 * 178.61278 * 5 4 2 7 7 N 1.46498 * 109.46120 * 58.65176 * 5 4 2 8 8 C 1.34778 * 120.00355 * 154.93514 * 7 5 4 9 9 O 1.21539 * 119.99720 * 359.97438 * 8 7 5 10 10 C 1.48000 * 120.00411 * 180.02562 * 8 7 5 11 11 N 1.34189 * 126.69618 * 359.67424 * 10 8 7 12 12 N 1.28989 * 107.25033 * 179.90078 * 11 10 8 13 13 N 1.28722 * 108.98707 * 0.37416 * 12 11 10 14 14 C 1.46501 * 125.31958 * 179.72155 * 13 12 11 15 15 C 1.52995 * 109.47247 * 240.04562 * 14 13 12 16 16 C 1.52999 * 109.46867 * 0.04950 * 14 13 12 17 17 C 1.53004 * 109.46763 * 120.04849 * 14 13 12 18 18 N 1.28873 * 109.35802 * 359.76372 * 13 12 11 19 19 C 1.53038 * 109.53558 * 298.63216 * 5 4 2 20 20 C 1.53195 * 109.31593 * 61.36896 * 19 5 4 21 21 N 1.46927 * 109.58519 * 239.64141 * 2 1 3 22 22 C 1.36932 * 120.63078 * 6.58768 * 21 2 1 23 23 H 1.08002 * 120.00018 * 330.17764 * 22 21 2 24 24 C 1.38820 * 120.00099 * 150.17787 * 22 21 2 25 25 N 1.31615 * 119.99767 * 344.49382 * 24 22 21 26 26 Si 1.86793 * 119.99937 * 164.49037 * 24 22 21 27 27 H 1.48507 * 109.47592 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47017 * 119.99974 * 26 24 22 29 29 H 1.48495 * 109.47307 * 239.99856 * 26 24 22 30 30 H 1.09000 * 109.47511 * 180.35434 * 1 2 3 31 31 H 1.08998 * 109.46706 * 300.35752 * 1 2 3 32 32 H 1.09003 * 109.46759 * 60.35045 * 1 2 3 33 33 H 1.08999 * 109.49587 * 294.36482 * 4 2 1 34 34 H 1.08999 * 109.49959 * 54.43454 * 4 2 1 35 35 H 0.97004 * 120.00257 * 334.93082 * 7 5 4 36 36 H 1.09000 * 109.47107 * 60.00004 * 15 14 13 37 37 H 1.09004 * 109.46962 * 180.02562 * 15 14 13 38 38 H 1.09003 * 109.47273 * 299.99981 * 15 14 13 39 39 H 1.08990 * 109.47359 * 60.00196 * 16 14 13 40 40 H 1.09005 * 109.46650 * 180.02562 * 16 14 13 41 41 H 1.09000 * 109.47270 * 299.99226 * 16 14 13 42 42 H 1.08997 * 109.47036 * 60.00095 * 17 14 13 43 43 H 1.09004 * 109.46911 * 180.02562 * 17 14 13 44 44 H 1.09002 * 109.46819 * 300.00046 * 17 14 13 45 45 H 1.09001 * 109.50125 * 301.41041 * 19 5 4 46 46 H 1.09005 * 109.49903 * 181.31496 * 19 5 4 47 47 H 1.08995 * 109.58776 * 65.15031 * 20 19 5 48 48 H 1.08997 * 109.58976 * 185.57867 * 20 19 5 49 49 H 0.97000 * 119.99945 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 1.2455 5 6 3.5675 -0.8482 1.1702 6 1 3.9378 -1.3450 2.0669 7 7 4.1571 0.4895 1.0750 8 6 5.4207 0.7004 1.4936 9 8 6.0710 -0.2191 1.9504 10 6 6.0162 2.0520 1.3979 11 7 5.4260 3.1559 0.9145 12 7 6.2790 4.1188 1.0101 13 7 7.3691 3.6633 1.5211 14 6 8.5760 4.4516 1.7824 15 6 9.7471 3.8697 0.9882 16 6 8.3405 5.9017 1.3550 17 6 8.9008 4.4066 3.2768 18 7 7.2332 2.4054 1.7659 19 6 3.9568 -1.6659 -0.0634 20 6 3.4651 -0.9471 -1.3237 21 7 2.0225 -0.6996 -1.1945 22 6 1.1536 -1.1135 -2.1685 23 1 0.1397 -1.3806 -1.9097 24 6 1.5760 -1.1897 -3.4887 25 7 2.6866 -0.5888 -3.8600 26 14 0.5683 -2.1451 -4.7380 27 1 -0.6272 -2.7225 -4.0725 28 1 0.1356 -1.2327 -5.8268 29 1 1.3948 -3.2392 -5.3082 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5084 -0.8931 33 1 1.7661 -0.1669 2.1369 34 1 1.6024 -1.7252 1.2917 35 1 3.6380 1.2236 0.7107 36 1 9.5157 3.9017 -0.0764 37 1 10.6452 4.4559 1.1830 38 1 9.9150 2.8366 1.2927 39 1 7.5062 6.3163 1.9208 40 1 9.2386 6.4881 1.5491 41 1 8.1091 5.9338 0.2904 42 1 9.0686 3.3735 3.5812 43 1 9.7986 4.9935 3.4714 44 1 8.0665 4.8212 3.8426 45 1 3.4982 -2.6530 -0.0052 46 1 5.0411 -1.7698 -0.1036 47 1 3.9904 0.0018 -1.4316 48 1 3.6517 -1.5719 -2.1971 49 1 2.9815 -0.6417 -4.7826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947334817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:20 Heat of formation + Delta-G solvation = 111.232391 kcal Electronic energy + Delta-G solvation = -30274.543609 eV Core-core repulsion = 26275.613208 eV Total energy + Delta-G solvation = -3998.930401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -44.45211 -39.76878 -37.99868 -37.54515 -34.40006 -33.53653 -32.68802 -32.24389 -31.12309 -29.63197 -28.08016 -28.03634 -26.43490 -25.49545 -24.73845 -24.51990 -22.06128 -21.23962 -20.87714 -20.52115 -18.61434 -18.06709 -17.44803 -16.91444 -16.35635 -15.51184 -15.14608 -14.93767 -14.70423 -14.45420 -14.18192 -13.98616 -13.93605 -13.69389 -13.35841 -13.12064 -13.00451 -12.84399 -12.81035 -12.44962 -12.32942 -12.28719 -11.97019 -11.83072 -11.58890 -11.41205 -11.17812 -11.08583 -11.04201 -10.99118 -10.66461 -10.62035 -10.39968 -10.36905 -10.15844 -10.05760 -10.02749 -9.66755 -9.27190 -8.69389 -8.42989 -6.58920 -5.74034 -3.18390 1.00405 1.52296 1.56177 2.98970 3.28827 3.39286 3.47459 3.48870 3.77180 4.04066 4.11287 4.16580 4.51659 4.56429 4.93518 4.94401 4.97175 5.11556 5.16196 5.17764 5.24336 5.35055 5.38671 5.40051 5.47175 5.56061 5.61030 5.62084 5.68264 5.75964 5.99226 6.02242 6.14624 6.22920 6.33818 6.38223 6.47741 6.56906 6.62259 6.74919 6.92926 7.04544 7.09938 7.40638 7.65832 7.71624 7.86296 8.16530 8.31858 8.50021 9.25487 9.89162 10.46310 11.34180 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.002835 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.878958 B = 9873.580431 C =10426.820690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.023 0.977 4 C -0.139 4.139 5 C 0.155 3.845 6 H 0.078 0.922 7 N -0.687 5.687 8 C 0.614 3.386 9 O -0.519 6.519 10 C 0.131 3.869 11 N -0.251 5.251 12 N -0.057 5.057 13 N -0.129 5.129 14 C 0.177 3.823 15 C -0.161 4.161 16 C -0.153 4.153 17 C -0.160 4.160 18 N -0.249 5.249 19 C -0.155 4.155 20 C 0.175 3.825 21 N -0.586 5.586 22 C -0.250 4.250 23 H 0.070 0.930 24 C 0.003 3.997 25 N -0.901 5.901 26 Si 0.899 3.101 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.412 0.588 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.019 0.981 48 H 0.085 0.915 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.858 11.339 13.804 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.041 0.959 4 C -0.179 4.179 5 C 0.052 3.948 6 H 0.096 0.904 7 N -0.339 5.339 8 C 0.394 3.606 9 O -0.392 6.392 10 C -0.153 4.153 11 N -0.125 5.125 12 N -0.050 5.050 13 N -0.043 5.043 14 C 0.096 3.904 15 C -0.219 4.219 16 C -0.211 4.211 17 C -0.218 4.218 18 N -0.102 5.102 19 C -0.195 4.195 20 C 0.049 3.951 21 N -0.310 5.310 22 C -0.379 4.379 23 H 0.088 0.912 24 C -0.196 4.196 25 N -0.545 5.545 26 Si 0.729 3.271 27 H -0.203 1.203 28 H -0.219 1.219 29 H -0.217 1.217 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.249 0.751 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.103 0.897 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.408 11.276 13.829 21.734 hybrid contribution -0.604 -0.526 -0.932 1.229 sum 11.804 10.750 12.896 20.524 Atomic orbital electron populations 1.21794 0.95758 1.01452 1.00364 1.20414 0.93276 0.93280 0.87151 0.95949 1.22384 0.93407 1.02582 0.99486 1.21044 0.93334 0.81219 0.99222 0.90423 1.45925 1.12603 1.13687 1.61694 1.16109 0.82387 0.82949 0.79185 1.90812 1.60994 1.41689 1.45699 1.25442 0.89440 0.97565 1.02829 1.76203 1.22929 0.96453 1.16964 1.78890 0.91139 1.22164 1.12778 1.50728 1.12848 1.04460 1.36278 1.21483 0.79237 0.91036 0.98607 1.22266 0.96014 1.03155 1.00509 1.22106 1.04045 0.91076 1.03902 1.22254 1.03412 1.04813 0.91313 1.74960 1.19217 0.96303 1.19676 1.22591 1.00061 0.99531 0.97340 1.20711 0.83274 0.97144 0.93976 1.44130 1.02929 1.64950 1.18966 1.19195 0.95184 1.37491 0.86054 0.91224 1.25102 0.97877 0.99593 0.97007 1.70038 1.24112 1.43834 1.16531 0.86275 0.79623 0.79594 0.81573 1.20281 1.21855 1.21707 0.92705 0.94286 0.91883 0.92368 0.90300 0.75062 0.91154 0.89037 0.90200 0.90493 0.89168 0.90387 0.90226 0.89044 0.91320 0.91376 0.92662 0.96323 0.89661 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.95 37.16 0.30 -2.18 16 2 C 0.17 3.27 3.20 -67.59 -0.22 3.05 16 3 H 0.02 0.46 6.64 -51.93 -0.34 0.12 16 4 C -0.14 -2.31 5.07 -26.61 -0.13 -2.44 16 5 C 0.16 2.71 2.78 -67.89 -0.19 2.53 16 6 H 0.08 1.32 7.57 -51.93 -0.39 0.92 16 7 N -0.69 -12.00 4.26 -54.66 -0.23 -12.23 16 8 C 0.61 11.20 7.80 -12.26 -0.10 11.10 16 9 O -0.52 -10.51 16.76 5.33 0.09 -10.42 16 10 C 0.13 2.25 8.14 -156.25 -1.27 0.98 16 11 N -0.25 -4.21 12.26 32.10 0.39 -3.82 16 12 N -0.06 -0.83 12.21 60.35 0.74 -0.09 16 13 N -0.13 -1.63 3.72 0.52 0.00 -1.63 16 14 C 0.18 1.39 1.30 -131.82 -0.17 1.22 16 15 C -0.16 -1.08 8.66 37.16 0.32 -0.75 16 16 C -0.15 -0.89 7.90 37.16 0.29 -0.60 16 17 C -0.16 -0.97 8.66 37.16 0.32 -0.65 16 18 N -0.25 -3.83 11.85 32.11 0.38 -3.45 16 19 C -0.16 -3.08 5.77 -26.61 -0.15 -3.23 16 20 C 0.17 4.15 5.03 -3.71 -0.02 4.14 16 21 N -0.59 -14.04 2.99 -164.77 -0.49 -14.54 16 22 C -0.25 -6.58 8.57 -15.06 -0.13 -6.71 16 23 H 0.07 1.79 6.24 -52.49 -0.33 1.47 16 24 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 25 N -0.90 -26.08 11.23 55.49 0.62 -25.46 16 26 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H 0.05 1.00 7.44 -51.93 -0.39 0.62 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.41 7.20 6.62 -40.82 -0.27 6.93 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.02 0.48 7.74 -51.93 -0.40 0.07 16 48 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 49 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -32.38 390.26 -6.77 -39.15 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.89 Total: 3.59 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.23 Total: 6.44 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 1.41 Total: -61.22 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.38 -6.77 -39.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947334817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.379 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds