Wall clock time and date at job start Tue Mar 31 2020 21:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.70374 * 2 1 4 4 C 1.53201 * 109.58278 * 120.35864 * 2 1 3 5 5 C 1.53042 * 109.31115 * 174.42072 * 4 2 1 6 6 H 1.08995 * 109.46266 * 178.61278 * 5 4 2 7 7 N 1.46498 * 109.46120 * 58.65176 * 5 4 2 8 8 C 1.34778 * 120.00355 * 154.93514 * 7 5 4 9 9 O 1.21539 * 119.99720 * 359.97438 * 8 7 5 10 10 C 1.48000 * 120.00411 * 180.02562 * 8 7 5 11 11 N 1.34189 * 126.69618 * 359.67424 * 10 8 7 12 12 N 1.28989 * 107.25033 * 179.90078 * 11 10 8 13 13 N 1.28722 * 108.98707 * 0.37416 * 12 11 10 14 14 C 1.46501 * 125.31958 * 179.72155 * 13 12 11 15 15 C 1.52995 * 109.47247 * 240.04562 * 14 13 12 16 16 C 1.52999 * 109.46867 * 0.04950 * 14 13 12 17 17 C 1.53004 * 109.46763 * 120.04849 * 14 13 12 18 18 N 1.28873 * 109.35802 * 359.76372 * 13 12 11 19 19 C 1.53038 * 109.53558 * 298.63216 * 5 4 2 20 20 C 1.53195 * 109.31593 * 61.36896 * 19 5 4 21 21 N 1.46927 * 109.58519 * 239.64141 * 2 1 3 22 22 C 1.36932 * 120.63078 * 6.58768 * 21 2 1 23 23 H 1.08002 * 120.00018 * 330.17764 * 22 21 2 24 24 C 1.38820 * 120.00099 * 150.17787 * 22 21 2 25 25 N 1.31615 * 119.99767 * 344.49382 * 24 22 21 26 26 Si 1.86793 * 119.99937 * 164.49037 * 24 22 21 27 27 H 1.48507 * 109.47592 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47017 * 119.99974 * 26 24 22 29 29 H 1.48495 * 109.47307 * 239.99856 * 26 24 22 30 30 H 1.09000 * 109.47511 * 180.35434 * 1 2 3 31 31 H 1.08998 * 109.46706 * 300.35752 * 1 2 3 32 32 H 1.09003 * 109.46759 * 60.35045 * 1 2 3 33 33 H 1.08999 * 109.49587 * 294.36482 * 4 2 1 34 34 H 1.08999 * 109.49959 * 54.43454 * 4 2 1 35 35 H 0.97004 * 120.00257 * 334.93082 * 7 5 4 36 36 H 1.09000 * 109.47107 * 60.00004 * 15 14 13 37 37 H 1.09004 * 109.46962 * 180.02562 * 15 14 13 38 38 H 1.09003 * 109.47273 * 299.99981 * 15 14 13 39 39 H 1.08990 * 109.47359 * 60.00196 * 16 14 13 40 40 H 1.09005 * 109.46650 * 180.02562 * 16 14 13 41 41 H 1.09000 * 109.47270 * 299.99226 * 16 14 13 42 42 H 1.08997 * 109.47036 * 60.00095 * 17 14 13 43 43 H 1.09004 * 109.46911 * 180.02562 * 17 14 13 44 44 H 1.09002 * 109.46819 * 300.00046 * 17 14 13 45 45 H 1.09001 * 109.50125 * 301.41041 * 19 5 4 46 46 H 1.09005 * 109.49903 * 181.31496 * 19 5 4 47 47 H 1.08995 * 109.58776 * 65.15031 * 20 19 5 48 48 H 1.08997 * 109.58976 * 185.57867 * 20 19 5 49 49 H 0.97000 * 119.99945 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 1.2455 5 6 3.5675 -0.8482 1.1702 6 1 3.9378 -1.3450 2.0669 7 7 4.1571 0.4895 1.0750 8 6 5.4207 0.7004 1.4936 9 8 6.0710 -0.2191 1.9504 10 6 6.0162 2.0520 1.3979 11 7 5.4260 3.1559 0.9145 12 7 6.2790 4.1188 1.0101 13 7 7.3691 3.6633 1.5211 14 6 8.5760 4.4516 1.7824 15 6 9.7471 3.8697 0.9882 16 6 8.3405 5.9017 1.3550 17 6 8.9008 4.4066 3.2768 18 7 7.2332 2.4054 1.7659 19 6 3.9568 -1.6659 -0.0634 20 6 3.4651 -0.9471 -1.3237 21 7 2.0225 -0.6996 -1.1945 22 6 1.1536 -1.1135 -2.1685 23 1 0.1397 -1.3806 -1.9097 24 6 1.5760 -1.1897 -3.4887 25 7 2.6866 -0.5888 -3.8600 26 14 0.5683 -2.1451 -4.7380 27 1 -0.6272 -2.7225 -4.0725 28 1 0.1356 -1.2327 -5.8268 29 1 1.3948 -3.2392 -5.3082 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5084 -0.8931 33 1 1.7661 -0.1669 2.1369 34 1 1.6024 -1.7252 1.2917 35 1 3.6380 1.2236 0.7107 36 1 9.5157 3.9017 -0.0764 37 1 10.6452 4.4559 1.1830 38 1 9.9150 2.8366 1.2927 39 1 7.5062 6.3163 1.9208 40 1 9.2386 6.4881 1.5491 41 1 8.1091 5.9338 0.2904 42 1 9.0686 3.3735 3.5812 43 1 9.7986 4.9935 3.4714 44 1 8.0665 4.8212 3.8426 45 1 3.4982 -2.6530 -0.0052 46 1 5.0411 -1.7698 -0.1036 47 1 3.9904 0.0018 -1.4316 48 1 3.6517 -1.5719 -2.1971 49 1 2.9815 -0.6417 -4.7826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947334817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:19 Heat of formation + Delta-G solvation = 89.527978 kcal Electronic energy + Delta-G solvation = -30275.484783 eV Core-core repulsion = 26275.613208 eV Total energy + Delta-G solvation = -3999.871575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.60840 -41.24477 -39.29067 -38.60348 -36.04037 -34.70786 -34.16974 -33.70912 -32.72063 -31.37110 -28.64541 -28.54131 -28.04401 -26.97613 -26.29346 -25.63112 -23.79584 -22.64481 -22.19831 -21.75383 -20.25338 -19.27964 -18.56561 -18.24319 -17.74910 -17.12588 -16.86788 -16.30301 -15.77265 -15.69690 -15.47458 -15.27684 -15.18521 -15.13718 -14.75455 -14.45724 -14.18102 -14.02175 -13.48706 -13.35273 -13.27720 -13.23281 -13.20482 -12.86662 -12.85746 -12.66399 -12.64969 -12.46092 -12.36420 -12.32468 -12.13794 -12.12539 -12.11459 -11.96469 -11.69448 -11.54956 -11.48182 -11.42518 -10.98066 -10.50612 -10.19218 -8.57130 -7.80361 -5.26284 -0.17710 0.24512 0.64901 1.46913 1.49607 1.58831 1.69780 1.90009 2.54608 2.80115 2.94816 3.35178 3.47949 3.55642 3.62784 3.64726 3.89028 4.00657 4.06716 4.19992 4.28688 4.40928 4.44205 4.51984 4.57960 4.60014 4.62480 4.66289 4.71743 4.72248 4.79890 4.92538 4.95845 5.01243 5.03294 5.10428 5.11487 5.17211 5.17673 5.21243 5.40834 5.44924 5.55495 5.59097 5.76189 5.77696 6.23222 6.46766 6.81973 7.03335 7.21283 7.93705 8.45797 9.26121 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.002835 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.878958 B = 9873.580431 C =10426.820690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.157 3.843 3 H 0.018 0.982 4 C -0.125 4.125 5 C 0.159 3.841 6 H 0.093 0.907 7 N -0.682 5.682 8 C 0.617 3.383 9 O -0.543 6.543 10 C 0.113 3.887 11 N -0.272 5.272 12 N -0.059 5.059 13 N -0.109 5.109 14 C 0.157 3.843 15 C -0.159 4.159 16 C -0.150 4.150 17 C -0.155 4.155 18 N -0.254 5.254 19 C -0.143 4.143 20 C 0.187 3.813 21 N -0.601 5.601 22 C -0.244 4.244 23 H 0.078 0.922 24 C -0.056 4.056 25 N -0.938 5.938 26 Si 0.959 3.041 27 H -0.263 1.263 28 H -0.297 1.297 29 H -0.297 1.297 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.412 0.588 36 H 0.057 0.943 37 H 0.132 0.868 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.130 0.870 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.131 0.869 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.048 0.952 47 H -0.008 1.008 48 H 0.047 0.953 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.017 12.298 16.005 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.051 3.949 3 H 0.035 0.965 4 C -0.164 4.164 5 C 0.055 3.945 6 H 0.111 0.889 7 N -0.334 5.334 8 C 0.397 3.603 9 O -0.418 6.418 10 C -0.171 4.171 11 N -0.146 5.146 12 N -0.052 5.052 13 N -0.026 5.026 14 C 0.079 3.921 15 C -0.217 4.217 16 C -0.208 4.208 17 C -0.213 4.213 18 N -0.109 5.109 19 C -0.183 4.183 20 C 0.061 3.939 21 N -0.325 5.325 22 C -0.374 4.374 23 H 0.096 0.904 24 C -0.250 4.250 25 N -0.585 5.585 26 Si 0.789 3.211 27 H -0.187 1.187 28 H -0.225 1.225 29 H -0.224 1.224 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.249 0.751 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.149 0.851 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.010 0.990 48 H 0.065 0.935 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.532 12.252 16.059 23.770 hybrid contribution -0.538 -0.693 -1.561 1.790 sum 11.994 11.559 14.498 22.083 Atomic orbital electron populations 1.21729 0.94249 1.01620 1.01087 1.20682 0.94594 0.92993 0.86642 0.96477 1.22267 0.92145 1.03088 0.98908 1.21044 0.94237 0.80928 0.98259 0.88858 1.45901 1.12499 1.13665 1.61329 1.16213 0.82288 0.83208 0.78569 1.90786 1.61519 1.42584 1.46921 1.25233 0.90208 0.97356 1.04310 1.76159 1.24008 0.96686 1.17777 1.78808 0.91612 1.21669 1.13069 1.51375 1.13399 1.03833 1.33948 1.22267 0.77856 0.91652 1.00316 1.22323 0.97006 1.02965 0.99390 1.22183 1.05829 0.89858 1.02929 1.22302 1.04995 1.04604 0.89436 1.74918 1.18579 0.97615 1.19762 1.22405 0.99502 0.99777 0.96598 1.20381 0.83644 0.95430 0.94454 1.44367 1.02562 1.65660 1.19870 1.19552 0.95610 1.35761 0.86477 0.90403 1.25818 0.99112 1.01151 0.98963 1.70203 1.26051 1.45980 1.16268 0.85312 0.78614 0.77930 0.79255 1.18660 1.22500 1.22413 0.92774 0.90522 0.94201 0.88953 0.89488 0.75062 0.92435 0.84948 0.91789 0.91004 0.85205 0.91598 0.91729 0.85067 0.91785 0.90723 0.93320 0.99023 0.93492 0.94679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 7.95 71.98 0.57 -3.84 16 2 C 0.16 5.97 3.20 44.98 0.14 6.11 16 3 H 0.02 0.70 6.64 -2.39 -0.02 0.68 16 4 C -0.12 -3.82 5.07 30.68 0.16 -3.66 16 5 C 0.16 5.35 2.78 45.02 0.13 5.47 16 6 H 0.09 2.96 7.57 -2.39 -0.02 2.94 16 7 N -0.68 -23.71 4.26 -445.14 -1.90 -25.61 16 8 C 0.62 22.67 7.80 86.83 0.68 23.35 16 9 O -0.54 -22.09 16.76 -3.84 -0.06 -22.15 16 10 C 0.11 3.91 8.14 137.15 1.12 5.03 16 11 N -0.27 -9.29 12.26 -52.37 -0.64 -9.93 16 12 N -0.06 -1.73 12.21 37.02 0.45 -1.28 16 13 N -0.11 -2.72 3.72 -152.26 -0.57 -3.28 16 14 C 0.16 2.19 1.30 3.60 0.00 2.20 16 15 C -0.16 -1.84 8.66 71.98 0.62 -1.21 16 16 C -0.15 -1.40 7.90 71.98 0.57 -0.83 16 17 C -0.16 -1.52 8.66 71.98 0.62 -0.90 16 18 N -0.25 -7.90 11.85 -52.32 -0.62 -8.52 16 19 C -0.14 -5.69 5.77 30.67 0.18 -5.51 16 20 C 0.19 9.19 5.03 86.36 0.43 9.63 16 21 N -0.60 -28.96 2.99 -675.20 -2.02 -30.97 16 22 C -0.24 -12.90 8.57 84.04 0.72 -12.18 16 23 H 0.08 3.94 6.24 -2.91 -0.02 3.93 16 24 C -0.06 -3.11 4.94 84.86 0.42 -2.69 16 25 N -0.94 -56.51 11.23 21.65 0.24 -56.27 16 26 Si 0.96 45.28 29.58 68.60 2.03 47.31 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 30 H 0.05 1.84 7.44 -2.39 -0.02 1.82 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.04 1.52 7.63 -2.39 -0.02 1.51 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.41 14.44 6.62 -92.71 -0.61 13.83 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.13 0.19 8.14 -2.38 -0.02 0.17 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 46 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 47 H -0.01 -0.45 7.74 -2.39 -0.02 -0.46 16 48 H 0.05 2.66 6.15 -2.39 -0.01 2.64 16 49 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -73.42 390.26 3.62 -69.80 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.34 Total: 19.95 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 6.36 Total: 20.97 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -5.05 Total: -135.87 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.42 3.62 -69.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947334817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.329 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds