Wall clock time and date at job start Tue Mar 31 2020 21:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47384 * 2 1 4 4 C 1.50703 * 109.47196 * 120.00254 * 2 1 3 5 5 N 1.31068 * 126.65845 * 300.16848 * 4 2 1 6 6 N 1.28844 * 107.99225 * 180.24371 * 5 4 2 7 7 N 1.28743 * 109.39193 * 359.75663 * 6 5 4 8 8 N 1.29015 * 108.80856 * 359.97438 * 7 6 5 9 9 C 1.46510 * 126.43398 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47189 * 90.02129 * 9 8 7 11 11 O 1.21285 * 120.00288 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00059 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00190 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.45860 * 324.97073 * 13 12 10 15 15 C 1.53039 * 109.46060 * 84.93339 * 13 12 10 16 16 C 1.52760 * 109.38104 * 181.26135 * 15 13 12 17 17 N 1.46929 * 109.00764 * 305.58666 * 16 15 13 18 18 C 1.36941 * 120.63129 * 233.58663 * 17 16 15 19 19 H 1.07996 * 120.00020 * 151.63448 * 18 17 16 20 20 C 1.38812 * 119.99995 * 331.63042 * 18 17 16 21 21 N 1.31621 * 119.99722 * 343.22679 * 20 18 17 22 22 Si 1.86797 * 120.00136 * 163.22713 * 20 18 17 23 23 H 1.48501 * 109.46972 * 60.00030 * 22 20 18 24 24 H 1.48503 * 109.47012 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47071 * 299.99984 * 22 20 18 26 26 C 1.46919 * 118.73822 * 53.31457 * 17 16 15 27 27 H 1.08998 * 109.58811 * 186.85181 * 26 17 16 28 28 C 1.53000 * 109.59219 * 66.56914 * 26 17 16 29 29 C 1.53042 * 109.45830 * 205.00599 * 13 12 10 30 30 H 1.08994 * 109.47302 * 299.99590 * 1 2 3 31 31 H 1.09001 * 109.47360 * 60.00009 * 1 2 3 32 32 H 1.08999 * 109.46907 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47581 * 240.00115 * 2 1 3 34 34 H 1.08993 * 109.47555 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47320 * 300.00061 * 3 2 1 36 36 H 1.09000 * 109.47179 * 59.99687 * 3 2 1 37 37 H 1.09003 * 109.46616 * 330.02192 * 9 8 7 38 38 H 1.08995 * 109.46777 * 210.02455 * 9 8 7 39 39 H 0.97001 * 119.99532 * 0.02562 * 12 10 9 40 40 H 1.08997 * 109.49835 * 301.33915 * 15 13 12 41 41 H 1.08999 * 109.49752 * 61.43633 * 15 13 12 42 42 H 1.09003 * 109.50686 * 185.71284 * 16 15 13 43 43 H 1.08998 * 109.43572 * 65.42623 * 16 15 13 44 44 H 0.97006 * 119.99968 * 180.02562 * 21 20 18 45 45 H 1.09008 * 109.46781 * 59.99821 * 28 26 17 46 46 H 1.08997 * 109.47864 * 180.02562 * 28 26 17 47 47 H 1.09004 * 109.46827 * 300.00798 * 28 26 17 48 48 H 1.08998 * 109.50114 * 58.65977 * 29 13 12 49 49 H 1.09001 * 109.52327 * 298.57979 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7950 -0.3802 2.4764 6 7 2.4015 -1.2269 3.2350 7 7 3.0154 -2.0916 2.5050 8 7 2.8088 -1.8093 1.2632 9 6 3.3279 -2.5429 0.1061 10 6 2.3495 -3.6196 -0.2863 11 8 1.3196 -3.7603 0.3387 12 7 2.6183 -4.4258 -1.3324 13 6 1.6668 -5.4723 -1.7142 14 1 1.1930 -5.8763 -0.8195 15 6 0.5971 -4.8781 -2.6333 16 6 -0.4116 -5.9634 -3.0050 17 7 0.3077 -7.1094 -3.5778 18 6 -0.0446 -7.6136 -4.8012 19 1 0.6959 -8.1013 -5.4178 20 6 -1.3534 -7.4979 -5.2489 21 7 -2.3172 -7.2150 -4.3983 22 14 -1.7469 -7.7438 -7.0583 23 1 -1.3466 -9.1132 -7.4703 24 1 -3.2052 -7.5672 -7.2762 25 1 -1.0017 -6.7458 -7.8670 26 6 1.4161 -7.7003 -2.8156 27 1 1.9177 -8.4527 -3.4240 28 6 0.8735 -8.3498 -1.5410 29 6 2.4080 -6.5920 -2.4484 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 4.2846 -2.9975 0.3636 38 1 3.4653 -1.8551 -0.7282 39 1 3.4418 -4.3131 -1.8324 40 1 0.0855 -4.0652 -2.1181 41 1 1.0673 -4.4962 -3.5395 42 1 -1.1155 -5.5703 -3.7386 43 1 -0.9501 -6.2794 -2.1116 44 1 -3.2320 -7.1345 -4.7110 45 1 0.1598 -9.1299 -1.8063 46 1 1.6972 -8.7871 -0.9769 47 1 0.3766 -7.5948 -0.9317 48 1 3.1852 -6.9990 -1.8016 49 1 2.8617 -6.1944 -3.3563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947796169.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:25 Heat of formation + Delta-G solvation = 93.579525 kcal Electronic energy + Delta-G solvation = -30256.714555 eV Core-core repulsion = 26257.018668 eV Total energy + Delta-G solvation = -3999.695887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.33150 -40.16413 -38.03497 -36.43462 -35.55968 -34.75390 -32.69944 -31.69246 -31.10568 -30.06568 -28.82330 -27.53270 -26.97522 -24.63229 -24.50708 -23.59696 -22.19044 -21.94602 -21.01157 -20.60650 -18.80441 -17.99909 -17.89050 -16.86286 -16.36443 -16.22725 -15.66314 -15.55234 -14.85275 -14.78568 -14.16951 -13.93443 -13.85904 -13.64663 -13.58430 -13.25112 -13.08335 -12.76744 -12.59349 -12.52053 -12.35033 -12.26504 -11.97163 -11.66933 -11.54495 -11.50616 -11.46488 -11.17838 -11.11465 -11.05107 -10.89107 -10.71075 -10.49509 -10.30506 -10.26050 -10.13114 -9.96892 -9.83548 -9.49412 -8.98870 -8.50916 -6.77349 -5.85974 -3.29591 1.02835 1.61230 2.14649 2.23226 2.91359 3.32861 3.39361 3.39722 3.61870 3.86497 4.14764 4.24843 4.37002 4.41763 4.61913 4.73553 4.88295 5.11332 5.23907 5.26114 5.29884 5.31800 5.39123 5.43307 5.51528 5.55279 5.58068 5.63044 5.83253 5.87408 5.90600 5.92976 6.00170 6.06398 6.17546 6.25378 6.31165 6.46199 6.51120 6.63711 6.68982 6.84046 7.06352 7.24130 7.30801 7.59255 7.72406 7.92606 8.37728 8.49329 9.13389 9.76425 10.32818 11.22378 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.002790 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.764490 B =10032.200637 C =10925.591695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.204 3.796 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.087 5.087 8 N -0.294 5.294 9 C 0.090 3.910 10 C 0.496 3.504 11 O -0.516 6.516 12 N -0.713 5.713 13 C 0.149 3.851 14 H 0.087 0.913 15 C -0.146 4.146 16 C 0.174 3.826 17 N -0.584 5.584 18 C -0.257 4.257 19 H 0.066 0.934 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.902 3.098 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.170 3.830 27 H 0.067 0.933 28 C -0.163 4.163 29 C -0.132 4.132 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.398 0.602 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.021 0.979 44 H 0.255 0.745 45 H 0.056 0.944 46 H 0.036 0.964 47 H 0.048 0.952 48 H 0.057 0.943 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.667 13.392 4.229 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.074 4.074 5 N -0.149 5.149 6 N -0.068 5.068 7 N -0.072 5.072 8 N -0.094 5.094 9 C -0.036 4.036 10 C 0.278 3.722 11 O -0.391 6.391 12 N -0.364 5.364 13 C 0.047 3.953 14 H 0.105 0.895 15 C -0.187 4.187 16 C 0.048 3.952 17 N -0.306 5.306 18 C -0.387 4.387 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.543 5.543 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.062 3.938 27 H 0.085 0.915 28 C -0.223 4.223 29 C -0.172 4.172 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.232 0.768 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.821 13.107 6.081 19.317 hybrid contribution 0.181 -0.282 -2.105 2.132 sum 13.002 12.825 3.976 18.691 Atomic orbital electron populations 1.21836 0.91537 1.03561 1.03399 1.19806 0.98071 0.95920 0.89489 1.21850 1.01059 0.93475 1.03754 1.26091 0.94560 0.88762 0.97996 1.74943 1.19680 1.21962 0.98351 1.78597 1.06789 0.98990 1.22421 1.78874 1.20378 1.20726 0.87223 1.47844 1.34728 1.20005 1.06832 1.22045 0.99394 0.95821 0.86333 1.20226 0.87377 0.83067 0.81553 1.90846 1.25951 1.69864 1.52445 1.46253 1.24430 1.34586 1.31155 1.21231 0.89277 0.86213 0.98594 0.89454 1.22507 0.98024 1.00226 0.97894 1.20643 0.91692 0.85187 0.97718 1.44139 1.36028 1.31925 1.18482 1.19108 0.92470 1.34908 0.92168 0.91670 1.25068 0.95493 1.00874 0.97932 1.70021 0.99542 1.52162 1.32568 0.86380 0.77015 0.78167 0.85231 1.20868 1.21633 1.21040 1.20435 0.89213 0.92109 0.92058 0.91509 1.22311 1.00239 1.00917 0.98788 1.22316 0.98686 0.96879 0.99340 0.91089 0.90785 0.91651 0.89127 0.92478 0.90716 0.90941 0.84106 0.84462 0.76792 0.92964 0.92495 0.89242 0.96099 0.93479 0.92487 0.94448 0.93313 0.92439 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.18 37.15 0.34 -0.99 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -0.90 9.18 37.16 0.34 -0.56 16 4 C 0.20 2.42 6.64 -155.44 -1.03 1.39 16 5 N -0.30 -4.42 12.36 32.70 0.40 -4.01 16 6 N -0.07 -1.20 13.43 60.35 0.81 -0.39 16 7 N -0.09 -1.28 13.29 60.35 0.80 -0.47 16 8 N -0.29 -3.45 2.83 -59.44 -0.17 -3.62 16 9 C 0.09 0.67 6.57 -5.19 -0.03 0.64 16 10 C 0.50 5.80 7.86 -10.99 -0.09 5.72 16 11 O -0.52 -8.89 16.09 5.55 0.09 -8.80 16 12 N -0.71 -7.56 5.08 -53.77 -0.27 -7.83 16 13 C 0.15 2.25 2.21 -67.89 -0.15 2.10 16 14 H 0.09 1.56 5.94 -51.93 -0.31 1.25 16 15 C -0.15 -2.59 5.64 -26.83 -0.15 -2.74 16 16 C 0.17 3.93 4.86 -3.93 -0.02 3.91 16 17 N -0.58 -13.45 2.70 -165.04 -0.45 -13.90 16 18 C -0.26 -6.62 9.58 -15.06 -0.14 -6.77 16 19 H 0.07 1.64 7.88 -52.49 -0.41 1.23 16 20 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 21 N -0.90 -25.22 11.20 55.49 0.62 -24.59 16 22 Si 0.90 20.82 29.59 -169.99 -5.03 15.79 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 C 0.17 3.19 3.28 -67.60 -0.22 2.97 16 27 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 28 C -0.16 -2.99 9.04 37.16 0.34 -2.65 16 29 C -0.13 -1.93 5.03 -26.61 -0.13 -2.06 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.57 6.84 -51.93 -0.36 0.21 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.14 0.44 7.12 -51.93 -0.37 0.07 16 39 H 0.40 2.68 8.60 -40.82 -0.35 2.33 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 43 H 0.02 0.52 7.52 -51.93 -0.39 0.13 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.93 5.76 -51.93 -0.30 0.64 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -34.47 392.95 -6.45 -40.93 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.85 Total: 0.36 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.34 Total: 0.62 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 1.75 Total: -54.82 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.47 -6.45 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947796169.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.506 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds