Wall clock time and date at job start Tue Mar 31 2020 21:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47384 * 2 1 4 4 C 1.50703 * 109.47196 * 120.00254 * 2 1 3 5 5 N 1.31068 * 126.65845 * 300.16848 * 4 2 1 6 6 N 1.28844 * 107.99225 * 180.24371 * 5 4 2 7 7 N 1.28743 * 109.39193 * 359.75663 * 6 5 4 8 8 N 1.29015 * 108.80856 * 359.97438 * 7 6 5 9 9 C 1.46510 * 126.43398 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47189 * 90.02129 * 9 8 7 11 11 O 1.21285 * 120.00288 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00059 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00190 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.45860 * 324.97073 * 13 12 10 15 15 C 1.53039 * 109.46060 * 84.93339 * 13 12 10 16 16 C 1.52760 * 109.38104 * 181.26135 * 15 13 12 17 17 N 1.46929 * 109.00764 * 305.58666 * 16 15 13 18 18 C 1.36941 * 120.63129 * 233.58663 * 17 16 15 19 19 H 1.07996 * 120.00020 * 151.63448 * 18 17 16 20 20 C 1.38812 * 119.99995 * 331.63042 * 18 17 16 21 21 N 1.31621 * 119.99722 * 343.22679 * 20 18 17 22 22 Si 1.86797 * 120.00136 * 163.22713 * 20 18 17 23 23 H 1.48501 * 109.46972 * 60.00030 * 22 20 18 24 24 H 1.48503 * 109.47012 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47071 * 299.99984 * 22 20 18 26 26 C 1.46919 * 118.73822 * 53.31457 * 17 16 15 27 27 H 1.08998 * 109.58811 * 186.85181 * 26 17 16 28 28 C 1.53000 * 109.59219 * 66.56914 * 26 17 16 29 29 C 1.53042 * 109.45830 * 205.00599 * 13 12 10 30 30 H 1.08994 * 109.47302 * 299.99590 * 1 2 3 31 31 H 1.09001 * 109.47360 * 60.00009 * 1 2 3 32 32 H 1.08999 * 109.46907 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47581 * 240.00115 * 2 1 3 34 34 H 1.08993 * 109.47555 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47320 * 300.00061 * 3 2 1 36 36 H 1.09000 * 109.47179 * 59.99687 * 3 2 1 37 37 H 1.09003 * 109.46616 * 330.02192 * 9 8 7 38 38 H 1.08995 * 109.46777 * 210.02455 * 9 8 7 39 39 H 0.97001 * 119.99532 * 0.02562 * 12 10 9 40 40 H 1.08997 * 109.49835 * 301.33915 * 15 13 12 41 41 H 1.08999 * 109.49752 * 61.43633 * 15 13 12 42 42 H 1.09003 * 109.50686 * 185.71284 * 16 15 13 43 43 H 1.08998 * 109.43572 * 65.42623 * 16 15 13 44 44 H 0.97006 * 119.99968 * 180.02562 * 21 20 18 45 45 H 1.09008 * 109.46781 * 59.99821 * 28 26 17 46 46 H 1.08997 * 109.47864 * 180.02562 * 28 26 17 47 47 H 1.09004 * 109.46827 * 300.00798 * 28 26 17 48 48 H 1.08998 * 109.50114 * 58.65977 * 29 13 12 49 49 H 1.09001 * 109.52327 * 298.57979 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7950 -0.3802 2.4764 6 7 2.4015 -1.2269 3.2350 7 7 3.0154 -2.0916 2.5050 8 7 2.8088 -1.8093 1.2632 9 6 3.3279 -2.5429 0.1061 10 6 2.3495 -3.6196 -0.2863 11 8 1.3196 -3.7603 0.3387 12 7 2.6183 -4.4258 -1.3324 13 6 1.6668 -5.4723 -1.7142 14 1 1.1930 -5.8763 -0.8195 15 6 0.5971 -4.8781 -2.6333 16 6 -0.4116 -5.9634 -3.0050 17 7 0.3077 -7.1094 -3.5778 18 6 -0.0446 -7.6136 -4.8012 19 1 0.6959 -8.1013 -5.4178 20 6 -1.3534 -7.4979 -5.2489 21 7 -2.3172 -7.2150 -4.3983 22 14 -1.7469 -7.7438 -7.0583 23 1 -1.3466 -9.1132 -7.4703 24 1 -3.2052 -7.5672 -7.2762 25 1 -1.0017 -6.7458 -7.8670 26 6 1.4161 -7.7003 -2.8156 27 1 1.9177 -8.4527 -3.4240 28 6 0.8735 -8.3498 -1.5410 29 6 2.4080 -6.5920 -2.4484 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 4.2846 -2.9975 0.3636 38 1 3.4653 -1.8551 -0.7282 39 1 3.4418 -4.3131 -1.8324 40 1 0.0855 -4.0652 -2.1181 41 1 1.0673 -4.4962 -3.5395 42 1 -1.1155 -5.5703 -3.7386 43 1 -0.9501 -6.2794 -2.1116 44 1 -3.2320 -7.1345 -4.7110 45 1 0.1598 -9.1299 -1.8063 46 1 1.6972 -8.7871 -0.9769 47 1 0.3766 -7.5948 -0.9317 48 1 3.1852 -6.9990 -1.8016 49 1 2.8617 -6.1944 -3.3563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947796169.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:24 Heat of formation + Delta-G solvation = 68.742631 kcal Electronic energy + Delta-G solvation = -30257.791564 eV Core-core repulsion = 26257.018668 eV Total energy + Delta-G solvation = -4000.772895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -45.29440 -41.23560 -39.45529 -37.18151 -36.51138 -36.06369 -34.37320 -32.74540 -32.45172 -31.59778 -29.93052 -28.42765 -28.12913 -26.21748 -25.49202 -24.73301 -23.71122 -23.28414 -21.95772 -21.50600 -20.19885 -19.19006 -18.84198 -18.40359 -17.39823 -17.28581 -16.77634 -16.50849 -16.36030 -15.65673 -15.55748 -15.51381 -15.09009 -14.67703 -14.62050 -14.31081 -14.21343 -14.17091 -13.93126 -13.73005 -13.19626 -13.15741 -13.11239 -12.93826 -12.69478 -12.63255 -12.56976 -12.48958 -12.31808 -12.29916 -12.28766 -12.06477 -12.03262 -11.90621 -11.77324 -11.51079 -11.27117 -11.10055 -10.86619 -10.55161 -10.10339 -8.67886 -7.85339 -5.30953 0.08880 0.85076 1.13123 1.35379 1.49051 1.50469 1.57333 2.01449 2.52728 2.87206 3.15390 3.30181 3.43072 3.61140 3.63789 3.84237 3.90714 4.00291 4.04502 4.07639 4.19640 4.28240 4.37035 4.44579 4.50956 4.64416 4.69370 4.75675 4.76830 4.81151 4.83123 4.86217 4.89997 4.94858 5.08359 5.11728 5.14241 5.16263 5.26056 5.32729 5.35258 5.44124 5.45592 5.54409 5.69002 5.76157 6.40812 6.41814 7.10437 7.16687 7.48267 7.88658 8.40242 9.21040 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.002790 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.764490 B =10032.200637 C =10925.591695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.138 4.138 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.102 5.102 8 N -0.291 5.291 9 C 0.089 3.911 10 C 0.496 3.504 11 O -0.578 6.578 12 N -0.693 5.693 13 C 0.162 3.838 14 H 0.057 0.943 15 C -0.130 4.130 16 C 0.184 3.816 17 N -0.599 5.599 18 C -0.258 4.258 19 H 0.073 0.927 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.276 1.276 24 H -0.301 1.301 25 H -0.274 1.274 26 C 0.159 3.841 27 H 0.070 0.930 28 C -0.155 4.155 29 C -0.117 4.117 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.033 0.967 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.180 0.820 38 H 0.193 0.807 39 H 0.424 0.576 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.052 0.948 43 H -0.018 1.018 44 H 0.247 0.753 45 H 0.025 0.975 46 H 0.073 0.927 47 H 0.030 0.970 48 H 0.093 0.907 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.564 14.515 2.287 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.196 4.196 4 C -0.069 4.069 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.088 5.088 8 N -0.092 5.092 9 C -0.035 4.035 10 C 0.281 3.719 11 O -0.457 6.457 12 N -0.345 5.345 13 C 0.057 3.943 14 H 0.075 0.925 15 C -0.170 4.170 16 C 0.057 3.943 17 N -0.321 5.321 18 C -0.388 4.388 19 H 0.091 0.909 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.793 3.207 23 H -0.202 1.202 24 H -0.228 1.228 25 H -0.200 1.200 26 C 0.052 3.948 27 H 0.089 0.911 28 C -0.214 4.214 29 C -0.156 4.156 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.052 0.948 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.197 0.803 38 H 0.210 0.790 39 H 0.263 0.737 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.001 0.999 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.111 0.889 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.815 14.229 4.118 22.410 hybrid contribution -1.043 -0.697 -1.494 1.951 sum 15.773 13.533 2.623 20.948 Atomic orbital electron populations 1.21824 0.92675 1.01636 1.04090 1.20100 0.97031 0.97264 0.88854 1.21841 1.01796 0.91830 1.04124 1.26739 0.93442 0.88556 0.98203 1.74852 1.20529 1.22687 0.99827 1.78553 1.08033 0.99956 1.23662 1.78754 1.20731 1.20723 0.88609 1.48117 1.34305 1.19930 1.06848 1.22560 0.98747 0.95560 0.86595 1.20918 0.87097 0.83299 0.80598 1.90852 1.28902 1.71551 1.54392 1.45809 1.24401 1.33145 1.31159 1.20731 0.89488 0.87392 0.96650 0.92523 1.22223 0.97651 0.98114 0.98992 1.20316 0.92432 0.86621 0.94898 1.44362 1.36827 1.32468 1.18471 1.19507 0.92478 1.33525 0.93316 0.90904 1.25816 0.95587 1.01749 1.01537 1.70206 0.99444 1.54440 1.34232 0.85380 0.76024 0.78367 0.80891 1.20212 1.22773 1.19980 1.20719 0.88698 0.93822 0.91530 0.91134 1.22210 1.00610 0.99576 0.98999 1.22130 0.97813 0.94977 1.00716 0.92323 0.88246 0.94768 0.86073 0.91242 0.88353 0.92585 0.80257 0.79036 0.73699 0.93641 0.91145 0.92949 0.99950 0.94390 0.95580 0.90779 0.95043 0.88887 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.18 71.98 0.66 -1.86 16 2 C -0.01 -0.15 3.26 -11.54 -0.04 -0.19 16 3 C -0.14 -1.31 9.18 71.98 0.66 -0.65 16 4 C 0.21 4.64 6.64 138.14 0.92 5.56 16 5 N -0.33 -9.76 12.36 -50.45 -0.62 -10.38 16 6 N -0.11 -3.54 13.43 37.01 0.50 -3.05 16 7 N -0.10 -2.93 13.29 37.02 0.49 -2.44 16 8 N -0.29 -6.18 2.83 -341.98 -0.97 -7.15 16 9 C 0.09 0.91 6.57 85.63 0.56 1.47 16 10 C 0.50 10.12 7.86 87.65 0.69 10.81 16 11 O -0.58 -19.65 16.09 -3.04 -0.05 -19.69 16 12 N -0.69 -11.87 5.08 -442.40 -2.25 -14.12 16 13 C 0.16 4.53 2.21 45.02 0.10 4.63 16 14 H 0.06 2.01 5.94 -2.38 -0.01 1.99 16 15 C -0.13 -4.51 5.64 30.53 0.17 -4.34 16 16 C 0.18 8.64 4.86 86.22 0.42 9.06 16 17 N -0.60 -27.77 2.70 -676.06 -1.83 -29.60 16 18 C -0.26 -13.33 9.58 84.03 0.81 -12.53 16 19 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 20 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 21 N -0.94 -55.01 11.20 21.65 0.24 -54.77 16 22 Si 0.96 43.36 29.59 68.60 2.03 45.39 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C 0.16 5.75 3.28 44.98 0.15 5.90 16 27 H 0.07 2.49 7.93 -2.39 -0.02 2.48 16 28 C -0.15 -5.64 9.04 71.98 0.65 -4.99 16 29 C -0.12 -2.98 5.03 30.67 0.15 -2.82 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.12 0.94 6.84 -2.39 -0.02 0.92 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.18 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.19 -0.11 7.12 -2.39 -0.02 -0.13 16 39 H 0.42 3.12 8.60 -92.71 -0.80 2.33 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.05 2.83 6.07 -2.39 -0.01 2.81 16 43 H -0.02 -0.94 7.52 -2.39 -0.02 -0.96 16 44 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 45 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.03 1.23 5.76 -2.39 -0.01 1.22 16 48 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 49 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -84.02 392.95 4.03 -79.99 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.16 Total: 8.14 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.32 Total: 7.68 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -4.43 Total: -121.50 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -84.02 4.03 -79.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947796169.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.730 kcal (2) G-P(sol) polarization free energy of solvation -84.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds