Wall clock time and date at job start Tue Mar 31 2020 21:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47343 * 2 1 4 4 C 1.50704 * 109.47005 * 119.99871 * 2 1 3 5 5 N 1.31064 * 126.65987 * 299.95862 * 4 2 1 6 6 N 1.28838 * 107.98998 * 180.02562 * 5 4 2 7 7 N 1.28741 * 109.39702 * 359.73165 * 6 5 4 8 8 N 1.29019 * 108.80527 * 0.43816 * 7 6 5 9 9 C 1.46502 * 126.43540 * 179.83108 * 8 7 6 10 10 C 1.50700 * 109.46971 * 269.69454 * 9 8 7 11 11 O 1.21278 * 120.00329 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99377 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99512 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.44784 * 34.96746 * 13 12 10 15 15 C 1.53033 * 109.45954 * 274.99943 * 13 12 10 16 16 C 1.53196 * 109.31225 * 178.61739 * 15 13 12 17 17 N 1.46919 * 108.77664 * 54.63354 * 16 15 13 18 18 C 1.36936 * 120.63174 * 126.37082 * 17 16 15 19 19 H 1.08000 * 120.00286 * 207.48504 * 18 17 16 20 20 C 1.38811 * 120.00078 * 27.48034 * 18 17 16 21 21 N 1.31618 * 120.00155 * 17.80597 * 20 18 17 22 22 Si 1.86802 * 120.00260 * 197.81148 * 20 18 17 23 23 H 1.48503 * 109.47046 * 265.36123 * 22 20 18 24 24 H 1.48505 * 109.46961 * 25.35479 * 22 20 18 25 25 H 1.48491 * 109.47320 * 145.35593 * 22 20 18 26 26 C 1.46926 * 118.73874 * 306.64383 * 17 16 15 27 27 H 1.09000 * 109.58770 * 173.14425 * 26 17 16 28 28 C 1.52995 * 109.58611 * 293.57092 * 26 17 16 29 29 C 1.52757 * 109.00733 * 53.30994 * 26 17 16 30 30 H 1.09005 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47105 * 300.00177 * 1 2 3 32 32 H 1.09002 * 109.46850 * 60.00072 * 1 2 3 33 33 H 1.09007 * 109.47175 * 239.99845 * 2 1 3 34 34 H 1.08995 * 109.47494 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46694 * 300.00039 * 3 2 1 36 36 H 1.08996 * 109.46882 * 59.99396 * 3 2 1 37 37 H 1.08996 * 109.46911 * 149.69378 * 9 8 7 38 38 H 1.09002 * 109.46716 * 29.69565 * 9 8 7 39 39 H 0.96994 * 120.00399 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.50328 * 58.66625 * 15 13 12 41 41 H 1.09006 * 109.52727 * 298.57944 * 15 13 12 42 42 H 1.08997 * 109.58462 * 294.84461 * 16 15 13 43 43 H 1.09002 * 109.58534 * 174.42317 * 16 15 13 44 44 H 0.96994 * 120.00105 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.47586 * 59.99958 * 28 26 17 46 46 H 1.09001 * 109.47267 * 180.02562 * 28 26 17 47 47 H 1.09002 * 109.46918 * 299.99615 * 28 26 17 48 48 H 1.09006 * 109.56752 * 185.55037 * 29 26 17 49 49 H 1.09003 * 109.38742 * 65.51844 * 29 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7981 -0.3779 2.4765 6 7 2.3996 -1.2281 3.2350 7 7 3.0068 -2.0976 2.5051 8 7 2.8089 -1.8092 1.2633 9 6 3.3271 -2.5434 0.1062 10 6 4.6651 -1.9751 -0.2912 11 8 5.1389 -1.0478 0.3304 12 7 5.3346 -2.4967 -1.3382 13 6 6.6350 -1.9439 -1.7250 14 1 7.1745 -1.6268 -0.8324 15 6 6.4237 -0.7411 -2.6472 16 6 7.7842 -0.1447 -3.0217 17 7 8.6236 -1.2051 -3.5957 18 6 9.2127 -1.0422 -4.8211 19 1 9.4373 -1.9045 -5.4313 20 6 9.5212 0.2314 -5.2791 21 7 9.5822 1.2380 -4.4334 22 14 9.8495 0.5166 -7.0958 23 1 11.3107 0.4474 -7.3515 24 1 9.1574 -0.5273 -7.8937 25 1 9.3415 1.8561 -7.4863 26 6 8.8140 -2.4461 -2.8326 27 1 9.3548 -3.1704 -3.4419 28 6 9.6079 -2.1485 -1.5591 29 6 7.4466 -3.0145 -2.4579 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 2.6301 -2.4482 -0.7263 38 1 3.4419 -3.5959 0.3655 39 1 4.9555 -3.2381 -1.8356 40 1 5.8258 0.0113 -2.1329 41 1 5.9059 -1.0617 -3.5513 42 1 8.2641 0.2589 -2.1302 43 1 7.6456 0.6492 -3.7557 44 1 9.7981 2.1279 -4.7534 45 1 9.0611 -1.4289 -0.9498 46 1 9.7485 -3.0703 -0.9947 47 1 10.5803 -1.7342 -1.8256 48 1 7.5766 -3.8805 -1.8086 49 1 6.9190 -3.3147 -3.3632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947796170.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:30 Heat of formation + Delta-G solvation = 93.902144 kcal Electronic energy + Delta-G solvation = -30262.636719 eV Core-core repulsion = 26262.954822 eV Total energy + Delta-G solvation = -3999.681897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -44.33252 -40.16769 -38.04762 -36.43314 -35.56151 -34.75746 -32.71713 -31.69279 -31.09041 -30.06821 -28.82526 -27.53121 -26.96601 -24.63330 -24.51104 -23.59789 -22.19444 -21.95862 -21.01357 -20.60822 -18.80653 -17.99976 -17.89053 -16.86566 -16.36811 -16.22439 -15.66774 -15.55341 -14.85059 -14.78709 -14.16973 -13.93823 -13.85497 -13.64716 -13.58328 -13.25569 -13.08489 -12.77045 -12.59321 -12.51995 -12.35714 -12.26749 -11.96980 -11.66913 -11.55087 -11.50784 -11.46479 -11.18725 -11.11585 -11.05254 -10.89767 -10.70780 -10.48938 -10.30862 -10.25466 -10.12611 -9.96915 -9.83227 -9.49552 -8.99373 -8.51183 -6.78753 -5.86465 -3.28543 1.02696 1.61322 2.14619 2.23093 2.91216 3.31845 3.39774 3.40994 3.61943 3.86489 4.14866 4.24750 4.36962 4.41691 4.61996 4.73610 4.88294 5.10938 5.23887 5.25492 5.29967 5.31414 5.39149 5.43433 5.51592 5.55284 5.58123 5.63423 5.83325 5.87546 5.90590 5.92961 6.00268 6.06070 6.17394 6.24868 6.30997 6.45724 6.50541 6.63432 6.68030 6.83612 7.06025 7.23849 7.30561 7.58869 7.72559 7.92437 8.36799 8.49297 9.12935 9.76419 10.32345 11.22027 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002797 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.982899 B =10008.539844 C =10907.377960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.145 4.145 4 C 0.204 3.796 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.087 5.087 8 N -0.294 5.294 9 C 0.090 3.910 10 C 0.496 3.504 11 O -0.516 6.516 12 N -0.713 5.713 13 C 0.149 3.851 14 H 0.088 0.912 15 C -0.146 4.146 16 C 0.174 3.826 17 N -0.585 5.585 18 C -0.255 4.255 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.899 5.899 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.289 1.289 26 C 0.170 3.830 27 H 0.067 0.933 28 C -0.164 4.164 29 C -0.132 4.132 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.398 0.602 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.021 0.979 43 H 0.090 0.910 44 H 0.254 0.746 45 H 0.048 0.952 46 H 0.037 0.963 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.142 -8.486 4.318 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.203 4.203 4 C -0.074 4.074 5 N -0.149 5.149 6 N -0.068 5.068 7 N -0.072 5.072 8 N -0.094 5.094 9 C -0.036 4.036 10 C 0.278 3.722 11 O -0.391 6.391 12 N -0.364 5.364 13 C 0.047 3.953 14 H 0.106 0.894 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.306 5.306 18 C -0.385 4.385 19 H 0.084 0.916 20 C -0.195 4.195 21 N -0.543 5.543 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.204 1.204 25 H -0.216 1.216 26 C 0.062 3.938 27 H 0.085 0.915 28 C -0.223 4.223 29 C -0.172 4.172 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.232 0.768 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.606 -7.791 6.162 19.350 hybrid contribution 0.200 -0.255 -2.098 2.123 sum -16.405 -8.046 4.064 18.718 Atomic orbital electron populations 1.21852 0.91974 1.02558 1.03754 1.19808 0.97233 0.96759 0.89487 1.21838 1.02263 0.92837 1.03396 1.26089 0.94660 0.88642 0.97995 1.74941 1.20736 1.20910 0.98352 1.78592 1.06904 0.98862 1.22431 1.78876 1.19139 1.21981 0.87222 1.47844 1.33843 1.20900 1.06831 1.22046 0.96576 0.98650 0.86327 1.20227 0.86147 0.84302 0.81544 1.90844 1.67893 1.27716 1.52648 1.46252 1.22269 1.36758 1.31147 1.21232 0.80958 0.94589 0.98540 0.89447 1.22579 1.01828 0.96394 0.97877 1.20742 0.85447 0.91373 0.97709 1.44160 1.54335 1.13794 1.18311 1.19148 1.34915 0.92411 0.92024 0.91605 1.25038 0.99504 0.96976 0.97937 1.70035 1.51389 1.00319 1.32529 0.86317 0.77974 0.77330 0.85351 1.21456 1.20436 1.21561 1.20346 0.91203 0.90229 0.92041 0.91498 1.22321 1.01453 0.99722 0.98811 1.22244 0.98895 0.96725 0.99348 0.92480 0.90938 0.90717 0.89128 0.91644 0.90786 0.91093 0.84470 0.84098 0.76790 0.92991 0.92467 0.96061 0.89165 0.93553 0.93296 0.94442 0.92517 0.92406 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.18 37.16 0.34 -0.56 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.15 -1.34 9.18 37.16 0.34 -0.99 16 4 C 0.20 2.42 6.64 -155.44 -1.03 1.39 16 5 N -0.30 -4.42 12.36 32.70 0.40 -4.01 16 6 N -0.07 -1.20 13.43 60.35 0.81 -0.39 16 7 N -0.09 -1.28 13.29 60.35 0.80 -0.48 16 8 N -0.29 -3.45 2.83 -59.44 -0.17 -3.62 16 9 C 0.09 0.67 6.57 -5.19 -0.03 0.64 16 10 C 0.50 5.79 7.86 -10.98 -0.09 5.71 16 11 O -0.52 -8.87 16.09 5.56 0.09 -8.78 16 12 N -0.71 -7.55 5.08 -53.77 -0.27 -7.82 16 13 C 0.15 2.24 2.21 -67.89 -0.15 2.09 16 14 H 0.09 1.56 5.93 -51.93 -0.31 1.25 16 15 C -0.15 -2.59 5.65 -26.61 -0.15 -2.74 16 16 C 0.17 3.92 4.90 -3.71 -0.02 3.90 16 17 N -0.58 -13.44 2.71 -165.04 -0.45 -13.89 16 18 C -0.26 -6.58 9.58 -15.06 -0.14 -6.72 16 19 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 20 C 0.00 0.12 4.90 -17.43 -0.09 0.03 16 21 N -0.90 -25.20 11.20 55.49 0.62 -24.57 16 22 Si 0.90 20.79 29.59 -169.99 -5.03 15.76 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.17 3.19 3.27 -67.83 -0.22 2.97 16 27 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 28 C -0.16 -2.99 9.02 37.16 0.34 -2.66 16 29 C -0.13 -1.92 4.99 -26.84 -0.13 -2.06 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.57 6.85 -51.93 -0.36 0.21 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.14 0.44 7.13 -51.93 -0.37 0.07 16 38 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.40 2.68 8.60 -40.82 -0.35 2.33 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.52 7.52 -51.93 -0.39 0.13 16 43 H 0.09 2.31 6.03 -51.93 -0.31 2.00 16 44 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.05 0.94 5.74 -51.93 -0.30 0.64 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -34.48 392.89 -6.45 -40.93 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.84 Total: 0.34 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.34 Total: 0.60 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 1.75 Total: -54.77 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.48 -6.45 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947796170.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.837 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds