Wall clock time and date at job start Tue Mar 31 2020 21:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47343 * 2 1 4 4 C 1.50704 * 109.47005 * 119.99871 * 2 1 3 5 5 N 1.31064 * 126.65987 * 299.95862 * 4 2 1 6 6 N 1.28838 * 107.98998 * 180.02562 * 5 4 2 7 7 N 1.28741 * 109.39702 * 359.73165 * 6 5 4 8 8 N 1.29019 * 108.80527 * 0.43816 * 7 6 5 9 9 C 1.46502 * 126.43540 * 179.83108 * 8 7 6 10 10 C 1.50700 * 109.46971 * 269.69454 * 9 8 7 11 11 O 1.21278 * 120.00329 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99377 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99512 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.44784 * 34.96746 * 13 12 10 15 15 C 1.53033 * 109.45954 * 274.99943 * 13 12 10 16 16 C 1.53196 * 109.31225 * 178.61739 * 15 13 12 17 17 N 1.46919 * 108.77664 * 54.63354 * 16 15 13 18 18 C 1.36936 * 120.63174 * 126.37082 * 17 16 15 19 19 H 1.08000 * 120.00286 * 207.48504 * 18 17 16 20 20 C 1.38811 * 120.00078 * 27.48034 * 18 17 16 21 21 N 1.31618 * 120.00155 * 17.80597 * 20 18 17 22 22 Si 1.86802 * 120.00260 * 197.81148 * 20 18 17 23 23 H 1.48503 * 109.47046 * 265.36123 * 22 20 18 24 24 H 1.48505 * 109.46961 * 25.35479 * 22 20 18 25 25 H 1.48491 * 109.47320 * 145.35593 * 22 20 18 26 26 C 1.46926 * 118.73874 * 306.64383 * 17 16 15 27 27 H 1.09000 * 109.58770 * 173.14425 * 26 17 16 28 28 C 1.52995 * 109.58611 * 293.57092 * 26 17 16 29 29 C 1.52757 * 109.00733 * 53.30994 * 26 17 16 30 30 H 1.09005 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47105 * 300.00177 * 1 2 3 32 32 H 1.09002 * 109.46850 * 60.00072 * 1 2 3 33 33 H 1.09007 * 109.47175 * 239.99845 * 2 1 3 34 34 H 1.08995 * 109.47494 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46694 * 300.00039 * 3 2 1 36 36 H 1.08996 * 109.46882 * 59.99396 * 3 2 1 37 37 H 1.08996 * 109.46911 * 149.69378 * 9 8 7 38 38 H 1.09002 * 109.46716 * 29.69565 * 9 8 7 39 39 H 0.96994 * 120.00399 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.50328 * 58.66625 * 15 13 12 41 41 H 1.09006 * 109.52727 * 298.57944 * 15 13 12 42 42 H 1.08997 * 109.58462 * 294.84461 * 16 15 13 43 43 H 1.09002 * 109.58534 * 174.42317 * 16 15 13 44 44 H 0.96994 * 120.00105 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.47586 * 59.99958 * 28 26 17 46 46 H 1.09001 * 109.47267 * 180.02562 * 28 26 17 47 47 H 1.09002 * 109.46918 * 299.99615 * 28 26 17 48 48 H 1.09006 * 109.56752 * 185.55037 * 29 26 17 49 49 H 1.09003 * 109.38742 * 65.51844 * 29 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7981 -0.3779 2.4765 6 7 2.3996 -1.2281 3.2350 7 7 3.0068 -2.0976 2.5051 8 7 2.8089 -1.8092 1.2633 9 6 3.3271 -2.5434 0.1062 10 6 4.6651 -1.9751 -0.2912 11 8 5.1389 -1.0478 0.3304 12 7 5.3346 -2.4967 -1.3382 13 6 6.6350 -1.9439 -1.7250 14 1 7.1745 -1.6268 -0.8324 15 6 6.4237 -0.7411 -2.6472 16 6 7.7842 -0.1447 -3.0217 17 7 8.6236 -1.2051 -3.5957 18 6 9.2127 -1.0422 -4.8211 19 1 9.4373 -1.9045 -5.4313 20 6 9.5212 0.2314 -5.2791 21 7 9.5822 1.2380 -4.4334 22 14 9.8495 0.5166 -7.0958 23 1 11.3107 0.4474 -7.3515 24 1 9.1574 -0.5273 -7.8937 25 1 9.3415 1.8561 -7.4863 26 6 8.8140 -2.4461 -2.8326 27 1 9.3548 -3.1704 -3.4419 28 6 9.6079 -2.1485 -1.5591 29 6 7.4466 -3.0145 -2.4579 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 2.6301 -2.4482 -0.7263 38 1 3.4419 -3.5959 0.3655 39 1 4.9555 -3.2381 -1.8356 40 1 5.8258 0.0113 -2.1329 41 1 5.9059 -1.0617 -3.5513 42 1 8.2641 0.2589 -2.1302 43 1 7.6456 0.6492 -3.7557 44 1 9.7981 2.1279 -4.7534 45 1 9.0611 -1.4289 -0.9498 46 1 9.7485 -3.0703 -0.9947 47 1 10.5803 -1.7342 -1.8256 48 1 7.5766 -3.8805 -1.8086 49 1 6.9190 -3.3147 -3.3632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947796170.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:28 Heat of formation + Delta-G solvation = 69.059707 kcal Electronic energy + Delta-G solvation = -30263.713968 eV Core-core repulsion = 26262.954822 eV Total energy + Delta-G solvation = -4000.759146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.29501 -41.23753 -39.46459 -37.18077 -36.51227 -36.06539 -34.38747 -32.73504 -32.44207 -31.60396 -29.92826 -28.41781 -28.12899 -26.22080 -25.49185 -24.73307 -23.71893 -23.29086 -21.95850 -21.50616 -20.19667 -19.19136 -18.84195 -18.40461 -17.39968 -17.28543 -16.77539 -16.50607 -16.36070 -15.65905 -15.55539 -15.50935 -15.09347 -14.68123 -14.61744 -14.30623 -14.21346 -14.17344 -13.93630 -13.73068 -13.19676 -13.17248 -13.11256 -12.94788 -12.69241 -12.62883 -12.58776 -12.49517 -12.31727 -12.29182 -12.28026 -12.05974 -12.00931 -11.90678 -11.76571 -11.50862 -11.26931 -11.09951 -10.86595 -10.56039 -10.10345 -8.69191 -7.85666 -5.29708 0.08776 0.85284 1.13062 1.35429 1.47817 1.50011 1.59263 2.01478 2.52746 2.87231 3.15419 3.29995 3.43141 3.61238 3.63607 3.84060 3.90756 4.00277 4.04491 4.07863 4.19573 4.28981 4.36998 4.44304 4.51153 4.64381 4.69560 4.75608 4.76148 4.81117 4.82874 4.86377 4.89915 4.94856 5.08360 5.11595 5.14229 5.16212 5.25995 5.32661 5.35205 5.43922 5.45678 5.54457 5.69309 5.76158 6.40609 6.41672 7.10478 7.16424 7.48274 7.88742 8.39925 9.21069 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002797 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.982899 B =10008.539844 C =10907.377960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.102 5.102 8 N -0.291 5.291 9 C 0.089 3.911 10 C 0.496 3.504 11 O -0.578 6.578 12 N -0.693 5.693 13 C 0.162 3.838 14 H 0.057 0.943 15 C -0.130 4.130 16 C 0.183 3.817 17 N -0.599 5.599 18 C -0.256 4.256 19 H 0.074 0.926 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.964 3.036 23 H -0.291 1.291 24 H -0.264 1.264 25 H -0.297 1.297 26 C 0.159 3.841 27 H 0.071 0.929 28 C -0.155 4.155 29 C -0.117 4.117 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.033 0.967 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.193 0.807 38 H 0.180 0.820 39 H 0.424 0.576 40 H 0.045 0.955 41 H 0.070 0.930 42 H -0.017 1.017 43 H 0.053 0.947 44 H 0.247 0.753 45 H 0.031 0.969 46 H 0.073 0.927 47 H 0.025 0.975 48 H 0.093 0.907 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.519 -11.808 2.398 22.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.069 4.069 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.088 5.088 8 N -0.092 5.092 9 C -0.035 4.035 10 C 0.281 3.719 11 O -0.457 6.457 12 N -0.345 5.345 13 C 0.057 3.943 14 H 0.075 0.925 15 C -0.170 4.170 16 C 0.057 3.943 17 N -0.321 5.321 18 C -0.386 4.386 19 H 0.091 0.909 20 C -0.248 4.248 21 N -0.584 5.584 22 Si 0.792 3.208 23 H -0.218 1.218 24 H -0.188 1.188 25 H -0.224 1.224 26 C 0.052 3.948 27 H 0.089 0.911 28 C -0.215 4.215 29 C -0.157 4.157 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.052 0.948 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.210 0.790 38 H 0.197 0.803 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.001 0.999 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.092 0.908 47 H 0.044 0.956 48 H 0.111 0.889 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.015 -11.205 4.221 22.471 hybrid contribution 1.009 0.767 -1.492 1.957 sum -18.006 -10.438 2.730 20.991 Atomic orbital electron populations 1.21842 0.90116 1.03509 1.04123 1.20101 0.98625 0.95666 0.88855 1.21825 1.00171 0.94143 1.04084 1.26735 0.93676 0.88316 0.98200 1.74851 1.21742 1.21471 0.99823 1.78549 1.08168 0.99816 1.23673 1.78756 1.19250 1.22206 0.88605 1.48117 1.33238 1.21000 1.06850 1.22561 0.94769 0.99564 0.86578 1.20917 0.87227 0.83167 0.80598 1.90851 1.69652 1.30594 1.54588 1.45808 1.20538 1.37027 1.31139 1.20733 0.83010 0.93922 0.96603 0.92515 1.22296 0.98330 0.97374 0.98980 1.20418 0.87935 0.91083 0.94905 1.44384 1.54496 1.14961 1.18302 1.19541 1.33404 0.92488 0.93171 0.90866 1.25783 1.00452 0.97014 1.01540 1.70214 1.53578 1.00369 1.34190 0.85320 0.77426 0.76970 0.81073 1.21811 1.18796 1.22392 1.20631 0.94110 0.88504 0.91521 0.91109 1.22222 0.99434 1.00773 0.99022 1.22060 0.95885 0.96991 1.00719 0.91238 0.92582 0.88357 0.86087 0.94768 0.88257 0.92322 0.79044 0.80255 0.73700 0.93665 0.91100 0.99900 0.92863 0.94399 0.95015 0.90773 0.95612 0.88854 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.18 71.98 0.66 -0.65 16 2 C -0.01 -0.15 3.26 -11.54 -0.04 -0.19 16 3 C -0.14 -2.53 9.18 71.98 0.66 -1.87 16 4 C 0.21 4.65 6.64 138.14 0.92 5.56 16 5 N -0.33 -9.75 12.36 -50.46 -0.62 -10.38 16 6 N -0.11 -3.54 13.43 37.01 0.50 -3.05 16 7 N -0.10 -2.93 13.29 37.02 0.49 -2.43 16 8 N -0.29 -6.17 2.83 -341.98 -0.97 -7.14 16 9 C 0.09 0.91 6.57 85.63 0.56 1.47 16 10 C 0.50 10.09 7.86 87.66 0.69 10.78 16 11 O -0.58 -19.60 16.09 -3.02 -0.05 -19.65 16 12 N -0.69 -11.83 5.08 -442.40 -2.25 -14.07 16 13 C 0.16 4.52 2.21 45.02 0.10 4.62 16 14 H 0.06 2.00 5.93 -2.38 -0.01 1.99 16 15 C -0.13 -4.50 5.65 30.67 0.17 -4.32 16 16 C 0.18 8.60 4.90 86.37 0.42 9.02 16 17 N -0.60 -27.73 2.71 -676.05 -1.83 -29.56 16 18 C -0.26 -13.20 9.58 84.03 0.81 -12.40 16 19 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 20 C -0.05 -2.85 4.90 84.86 0.42 -2.44 16 21 N -0.94 -54.98 11.20 21.65 0.24 -54.74 16 22 Si 0.96 43.33 29.59 68.60 2.03 45.36 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 26 C 0.16 5.73 3.27 44.83 0.15 5.88 16 27 H 0.07 2.49 7.93 -2.39 -0.02 2.48 16 28 C -0.16 -5.65 9.02 71.98 0.65 -5.00 16 29 C -0.12 -2.97 4.99 30.53 0.15 -2.82 16 30 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.12 0.94 6.85 -2.38 -0.02 0.93 16 34 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.19 -0.11 7.13 -2.39 -0.02 -0.13 16 38 H 0.18 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.42 3.10 8.60 -92.71 -0.80 2.31 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 42 H -0.02 -0.91 7.52 -2.39 -0.02 -0.93 16 43 H 0.05 2.87 6.03 -2.39 -0.01 2.86 16 44 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.03 1.24 5.74 -2.39 -0.01 1.23 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 49 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -84.01 392.89 4.03 -79.98 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.16 Total: 8.03 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 6.32 Total: 7.64 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -4.44 Total: -121.37 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.05 Total: -19.65 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -84.01 4.03 -79.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947796170.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.043 kcal (2) G-P(sol) polarization free energy of solvation -84.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds