Wall clock time and date at job start Tue Mar 31 2020 21:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.45490 * 2 1 4 4 C 1.53045 * 109.45970 * 240.02809 * 2 1 3 5 5 C 1.53193 * 109.31104 * 178.61457 * 4 2 1 6 6 N 1.46926 * 108.77522 * 54.64154 * 5 4 2 7 7 C 1.36932 * 120.63215 * 126.36742 * 6 5 4 8 8 H 1.08005 * 120.00170 * 332.78236 * 7 6 5 9 9 C 1.38809 * 120.00091 * 153.05655 * 7 6 5 10 10 N 1.31622 * 119.99839 * 159.13375 * 9 7 6 11 11 Si 1.86792 * 120.00094 * 339.13715 * 9 7 6 12 12 H 1.48496 * 109.47335 * 93.09301 * 11 9 7 13 13 H 1.48508 * 109.47292 * 213.09529 * 11 9 7 14 14 H 1.48507 * 109.47235 * 333.09221 * 11 9 7 15 15 C 1.46924 * 118.73808 * 306.63663 * 6 5 4 16 16 C 1.52766 * 109.00532 * 53.31230 * 15 6 5 17 17 H 1.09001 * 109.56279 * 185.55013 * 16 15 6 18 18 N 1.46497 * 109.38682 * 65.51508 * 16 15 6 19 19 C 1.34782 * 119.99815 * 85.14149 * 18 16 15 20 20 O 1.21536 * 120.00001 * 0.02562 * 19 18 16 21 21 C 1.48009 * 119.99637 * 179.97438 * 19 18 16 22 22 N 1.34183 * 126.70051 * 359.69055 * 21 19 18 23 23 N 1.28981 * 107.25274 * 179.83321 * 22 21 19 24 24 N 1.28725 * 108.98630 * 0.43184 * 23 22 21 25 25 C 1.46498 * 125.31768 * 179.68923 * 24 23 22 26 26 C 1.53009 * 109.46821 * 240.04011 * 25 24 23 27 27 C 1.52997 * 109.47469 * 0.03995 * 25 24 23 28 28 C 1.52997 * 109.47216 * 120.04447 * 25 24 23 29 29 N 1.28871 * 109.35883 * 359.72479 * 24 23 22 30 30 H 1.09006 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47019 * 299.97039 * 1 2 3 32 32 H 1.09000 * 109.47232 * 59.96911 * 1 2 3 33 33 H 1.08999 * 109.49065 * 58.66621 * 4 2 1 34 34 H 1.08999 * 109.49897 * 298.57294 * 4 2 1 35 35 H 1.08999 * 109.58657 * 294.85036 * 5 4 2 36 36 H 1.09002 * 109.57750 * 174.42668 * 5 4 2 37 37 H 0.97004 * 119.99980 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.58632 * 173.14678 * 15 6 5 39 39 H 1.09001 * 109.58984 * 293.57715 * 15 6 5 40 40 H 0.96998 * 120.00476 * 265.14173 * 18 16 15 41 41 H 1.08995 * 109.46668 * 60.00378 * 26 25 24 42 42 H 1.09002 * 109.46876 * 180.02562 * 26 25 24 43 43 H 1.08995 * 109.47160 * 300.00447 * 26 25 24 44 44 H 1.09002 * 109.46777 * 59.99863 * 27 25 24 45 45 H 1.09002 * 109.47276 * 179.97438 * 27 25 24 46 46 H 1.08999 * 109.47013 * 300.00484 * 27 25 24 47 47 H 1.09000 * 109.47385 * 59.99692 * 28 25 24 48 48 H 1.08997 * 109.47234 * 179.97438 * 28 25 24 49 49 H 1.08999 * 109.47263 * 299.99953 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6887 -1.2642 6 7 4.0678 -1.2490 0.0001 7 6 4.9756 -2.2741 0.0001 8 1 5.0133 -2.9621 -0.8316 9 6 5.8437 -2.4324 1.0717 10 7 6.4151 -3.5981 1.2890 11 14 6.2008 -0.9914 2.2052 12 1 5.2685 -1.0274 3.3605 13 1 7.5999 -1.0817 2.6951 14 1 6.0181 0.2808 1.4612 15 6 3.5672 -0.6924 1.2643 16 6 2.0398 -0.7208 1.2501 17 1 1.6572 -0.2207 2.1399 18 7 1.5794 -2.1114 1.2347 19 6 1.4509 -2.7915 2.3913 20 8 1.7165 -2.2510 3.4469 21 6 0.9852 -4.1964 2.3757 22 7 0.6504 -4.9183 1.2953 23 7 0.3040 -6.0895 1.7102 24 7 0.3993 -6.1244 2.9934 25 6 0.0859 -7.2820 3.8348 26 6 -1.0314 -6.9138 4.8132 27 6 -0.3717 -8.4450 2.9523 28 6 1.3335 -7.6960 4.6178 29 7 0.8128 -4.9816 3.4223 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5143 -0.8897 33 1 1.6572 -0.2208 -2.1398 34 1 1.6977 -1.7557 -1.2383 35 1 3.9142 0.3408 -1.3673 36 1 3.9415 -1.2847 -2.0984 37 1 7.0214 -3.7088 2.0380 38 1 3.9347 -1.2908 2.0979 39 1 3.9097 0.3368 1.3715 40 1 1.3671 -2.5428 0.3923 41 1 -1.9201 -6.6188 4.2553 42 1 -1.2642 -7.7749 5.4395 43 1 -0.7054 -6.0852 5.4418 44 1 0.4243 -8.7072 2.2553 45 1 -0.6044 -9.3064 3.5783 46 1 -1.2604 -8.1500 2.3945 47 1 1.6595 -6.8675 5.2465 48 1 1.1002 -8.5570 5.2441 49 1 2.1295 -7.9583 3.9209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966239607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:44 Heat of formation + Delta-G solvation = 115.280933 kcal Electronic energy + Delta-G solvation = -31056.504888 eV Core-core repulsion = 27057.750045 eV Total energy + Delta-G solvation = -3998.754843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.26129 -39.79448 -37.96466 -37.52989 -34.32032 -33.47226 -32.94203 -32.25000 -31.32745 -29.72379 -27.97136 -27.88284 -27.59953 -25.22723 -24.36790 -23.83336 -22.69022 -21.21347 -20.96123 -20.62088 -18.84560 -17.99719 -17.26214 -16.79269 -16.78011 -15.40943 -15.33899 -14.78233 -14.61298 -14.43404 -14.23352 -13.97251 -13.76496 -13.57336 -13.36281 -13.30951 -13.19212 -12.83722 -12.73767 -12.70642 -12.19146 -12.15369 -12.10092 -11.98519 -11.82674 -11.64531 -11.45860 -11.44739 -11.11587 -10.91779 -10.84584 -10.57894 -10.50946 -10.24698 -10.18968 -10.00353 -9.83576 -9.73132 -9.38074 -8.75765 -8.42366 -6.91438 -5.89162 -3.24533 1.19973 1.72044 1.73599 3.13771 3.44908 3.52955 3.54557 3.56698 3.92532 4.18477 4.27468 4.32172 4.60750 4.72852 4.96592 5.01016 5.05573 5.07146 5.13552 5.15379 5.22642 5.23510 5.30660 5.33347 5.46529 5.48551 5.59278 5.70144 5.76892 5.77431 5.79472 5.88652 5.92149 6.00123 6.10413 6.11755 6.19986 6.23732 6.33668 6.39698 6.53647 6.65670 6.69586 6.84821 6.93706 7.80453 8.01063 8.34555 8.38168 8.51446 8.98615 9.78270 10.14345 11.26558 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.004193 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.584626 B = 6676.238652 C = 7821.325744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.082 0.918 4 C -0.133 4.133 5 C 0.146 3.854 6 N -0.601 5.601 7 C -0.258 4.258 8 H 0.085 0.915 9 C 0.027 3.973 10 N -0.907 5.907 11 Si 0.874 3.126 12 H -0.284 1.284 13 H -0.304 1.304 14 H -0.270 1.270 15 C 0.112 3.888 16 C 0.135 3.865 17 H 0.085 0.915 18 N -0.674 5.674 19 C 0.617 3.383 20 O -0.519 6.519 21 C 0.139 3.861 22 N -0.252 5.252 23 N -0.059 5.059 24 N -0.129 5.129 25 C 0.178 3.822 26 C -0.159 4.159 27 C -0.152 4.152 28 C -0.162 4.162 29 N -0.248 5.248 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.261 0.739 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.409 0.591 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.504 -5.054 2.906 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.173 4.173 5 C 0.020 3.980 6 N -0.325 5.325 7 C -0.386 4.386 8 H 0.102 0.898 9 C -0.172 4.172 10 N -0.550 5.550 11 Si 0.704 3.296 12 H -0.211 1.211 13 H -0.232 1.232 14 H -0.195 1.195 15 C -0.015 4.015 16 C 0.029 3.971 17 H 0.103 0.897 18 N -0.326 5.326 19 C 0.397 3.603 20 O -0.392 6.392 21 C -0.145 4.145 22 N -0.127 5.127 23 N -0.052 5.052 24 N -0.043 5.043 25 C 0.097 3.903 26 C -0.217 4.217 27 C -0.210 4.210 28 C -0.220 4.220 29 N -0.101 5.101 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.246 0.754 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.109 0.891 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.367 -5.303 3.511 18.495 hybrid contribution 0.522 0.814 0.547 1.111 sum -16.845 -4.488 4.058 17.899 Atomic orbital electron populations 1.21857 0.95402 1.01825 1.01253 1.21317 0.95203 0.99800 0.94902 0.89941 1.22113 0.98830 1.00140 0.96179 1.20960 0.90898 0.96671 0.89430 1.44289 1.48598 1.40483 0.99100 1.18844 1.09807 1.02785 1.07152 0.89784 1.25225 0.97460 0.96519 0.98008 1.69843 1.32958 1.21826 1.30371 0.87055 0.76408 0.84893 0.81210 1.21104 1.23211 1.19467 1.21729 0.90947 0.97811 0.91029 1.21584 0.97055 0.80165 0.98285 0.89658 1.45517 1.65351 1.13676 1.08067 1.16039 0.78232 0.81087 0.84979 1.90811 1.50072 1.67536 1.30787 1.25348 1.04840 0.98984 0.85370 1.76117 1.14109 0.97340 1.25125 1.78826 1.16406 1.15440 0.94552 1.50660 1.38710 1.09998 1.04975 1.21450 0.98114 0.80708 0.90040 1.22244 0.96666 1.04062 0.98742 1.22095 1.03488 0.95511 0.99946 1.22270 0.95445 1.03499 1.00836 1.74961 1.15467 0.93108 1.26599 0.92698 0.92944 0.92729 0.92080 0.91994 0.95821 0.91740 0.92940 0.90101 0.94648 0.75382 0.91412 0.89126 0.90250 0.90365 0.89259 0.90597 0.90171 0.89146 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.05 37.16 0.34 -1.43 16 2 C -0.09 -1.35 2.48 -90.58 -0.22 -1.58 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.13 -2.00 5.20 -26.61 -0.14 -2.14 16 5 C 0.15 2.74 6.52 -3.71 -0.02 2.72 16 6 N -0.60 -14.08 2.70 -172.58 -0.47 -14.55 16 7 C -0.26 -7.25 10.03 -15.06 -0.15 -7.40 16 8 H 0.08 2.53 8.06 -52.48 -0.42 2.10 16 9 C 0.03 0.80 5.23 -17.43 -0.09 0.71 16 10 N -0.91 -28.72 13.97 55.49 0.78 -27.95 16 11 Si 0.87 23.42 24.35 -169.99 -4.14 19.28 16 12 H -0.28 -7.70 6.62 56.52 0.37 -7.32 16 13 H -0.30 -8.25 7.11 56.52 0.40 -7.85 16 14 H -0.27 -6.94 6.64 56.52 0.38 -6.56 16 15 C 0.11 2.50 3.76 -3.93 -0.01 2.49 16 16 C 0.13 2.46 2.23 -68.03 -0.15 2.31 16 17 H 0.09 1.53 7.58 -51.93 -0.39 1.13 16 18 N -0.67 -12.71 4.24 -54.79 -0.23 -12.94 16 19 C 0.62 12.89 7.80 -12.25 -0.10 12.80 16 20 O -0.52 -12.16 16.76 5.33 0.09 -12.07 16 21 C 0.14 2.72 8.14 -156.25 -1.27 1.45 16 22 N -0.25 -4.67 12.26 32.10 0.39 -4.28 16 23 N -0.06 -0.97 12.21 60.35 0.74 -0.24 16 24 N -0.13 -1.91 3.72 0.52 0.00 -1.91 16 25 C 0.18 1.73 1.30 -131.82 -0.17 1.56 16 26 C -0.16 -1.21 8.66 37.16 0.32 -0.89 16 27 C -0.15 -1.12 7.90 37.16 0.29 -0.82 16 28 C -0.16 -1.48 8.66 37.16 0.32 -1.16 16 29 N -0.25 -4.48 11.85 32.11 0.38 -4.10 16 30 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.97 6.40 -51.93 -0.33 0.64 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 37 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 38 H 0.08 2.13 4.49 -51.93 -0.23 1.90 16 39 H 0.04 0.78 7.08 -51.93 -0.37 0.41 16 40 H 0.41 7.32 6.39 -40.82 -0.26 7.06 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -35.52 387.16 -5.61 -41.13 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.92 Total: 3.16 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -1.06 Total: 8.62 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: 1.59 Total: -65.96 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.14 Total: 19.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.52 -5.61 -41.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966239607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.413 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds