Wall clock time and date at job start Tue Mar 31 2020 21:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.45101 * 2 1 4 4 C 1.53039 * 109.46013 * 119.96349 * 2 1 3 5 5 C 1.53191 * 109.31397 * 181.38419 * 4 2 1 6 6 N 1.46930 * 108.77811 * 305.36966 * 5 4 2 7 7 C 1.36932 * 120.63126 * 233.63023 * 6 5 4 8 8 H 1.08000 * 119.99981 * 152.61910 * 7 6 5 9 9 C 1.38822 * 119.99922 * 332.61975 * 7 6 5 10 10 N 1.31621 * 119.99743 * 159.34327 * 9 7 6 11 11 Si 1.86794 * 119.99899 * 339.34398 * 9 7 6 12 12 H 1.48498 * 109.47080 * 92.96250 * 11 9 7 13 13 H 1.48496 * 109.47013 * 212.96148 * 11 9 7 14 14 H 1.48503 * 109.47413 * 332.96145 * 11 9 7 15 15 C 1.46927 * 118.74034 * 53.60465 * 6 5 4 16 16 C 1.53037 * 109.45996 * 240.03459 * 2 1 3 17 17 H 1.08997 * 109.49777 * 298.56316 * 16 2 1 18 18 N 1.46499 * 109.52664 * 58.64988 * 16 2 1 19 19 C 1.34776 * 120.00181 * 204.85489 * 18 16 2 20 20 O 1.21537 * 119.99657 * 359.97438 * 19 18 16 21 21 C 1.48001 * 120.00129 * 179.97438 * 19 18 16 22 22 N 1.34192 * 126.69826 * 359.69187 * 21 19 18 23 23 N 1.28985 * 107.25037 * 179.89107 * 22 21 19 24 24 N 1.28719 * 108.98672 * 0.36921 * 23 22 21 25 25 C 1.46508 * 125.31938 * 179.79696 * 24 23 22 26 26 C 1.53005 * 109.46893 * 239.96711 * 25 24 23 27 27 C 1.53007 * 109.46879 * 359.96181 * 25 24 23 28 28 C 1.52999 * 109.47089 * 119.96085 * 25 24 23 29 29 N 1.28870 * 109.36494 * 359.76595 * 24 23 22 30 30 H 1.09004 * 109.46978 * 300.03630 * 1 2 3 31 31 H 1.09000 * 109.47158 * 60.03280 * 1 2 3 32 32 H 1.08996 * 109.47172 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49375 * 61.43916 * 4 2 1 34 34 H 1.08996 * 109.49893 * 301.33533 * 4 2 1 35 35 H 1.09007 * 109.58671 * 65.15367 * 5 4 2 36 36 H 1.08999 * 109.58773 * 185.43627 * 5 4 2 37 37 H 0.96999 * 119.99630 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.58479 * 66.17446 * 15 6 5 39 39 H 1.08993 * 109.59116 * 186.60516 * 15 6 5 40 40 H 0.97006 * 119.99974 * 24.84813 * 18 16 2 41 41 H 1.08993 * 109.47214 * 59.99708 * 26 25 24 42 42 H 1.09004 * 109.46901 * 179.97438 * 26 25 24 43 43 H 1.09002 * 109.46591 * 299.99342 * 26 25 24 44 44 H 1.08999 * 109.46786 * 60.00295 * 27 25 24 45 45 H 1.08995 * 109.46802 * 180.02562 * 27 25 24 46 46 H 1.09004 * 109.46937 * 299.99855 * 27 25 24 47 47 H 1.09006 * 109.46708 * 60.00561 * 28 25 24 48 48 H 1.08995 * 109.46853 * 179.97438 * 28 25 24 49 49 H 1.08995 * 109.47273 * 300.00020 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6886 1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9758 -2.2739 0.0000 8 1 5.0119 -2.9632 -0.8306 9 6 5.8497 -2.4271 1.0677 10 7 6.4255 -3.5906 1.2850 11 14 6.2083 -0.9822 2.1958 12 1 5.2798 -1.0162 3.3542 13 1 7.6089 -1.0691 2.6814 14 1 6.0214 0.2875 1.4487 15 6 3.5715 -0.6886 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6979 -1.7556 -1.2383 18 7 1.5257 -0.0493 -2.4463 19 6 1.4003 -0.7326 -3.6012 20 8 1.7143 -1.9057 -3.6504 21 6 0.8803 -0.0545 -4.8096 22 7 0.4905 1.2260 -4.9055 23 7 0.1085 1.4194 -6.1222 24 7 0.2354 0.3208 -6.7807 25 6 -0.0999 0.1374 -8.1951 26 6 -1.1755 -0.9426 -8.3282 27 6 -0.6260 1.4545 -8.7693 28 6 1.1512 -0.2909 -8.9645 29 7 0.7043 -0.5926 -6.0018 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6979 -1.7556 1.2383 34 1 1.6573 -0.2206 2.1398 35 1 3.9143 0.3410 1.3674 36 1 3.9416 -1.2824 2.1000 37 1 7.0364 -3.6975 2.0308 38 1 3.9143 0.3410 -1.3673 39 1 3.9417 -1.2844 -2.0984 40 1 1.2753 0.8871 -2.4072 41 1 -2.0667 -0.6374 -7.7801 42 1 -1.4253 -1.0787 -9.3805 43 1 -0.8007 -1.8809 -7.9191 44 1 0.1402 2.2239 -8.6744 45 1 -0.8759 1.3179 -9.8214 46 1 -1.5173 1.7596 -8.2211 47 1 1.5258 -1.2292 -8.5553 48 1 0.9015 -0.4277 -10.0166 49 1 1.9173 0.4786 -8.8696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966239608.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:49 Heat of formation + Delta-G solvation = 113.367567 kcal Electronic energy + Delta-G solvation = -29907.563521 eV Core-core repulsion = 25908.725708 eV Total energy + Delta-G solvation = -3998.837813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.61063 -39.87214 -38.15403 -37.75538 -34.74359 -33.74901 -33.19212 -32.55738 -31.38575 -29.50910 -28.18797 -28.12003 -27.65960 -25.53940 -24.69090 -23.78915 -22.64988 -21.28387 -21.12737 -20.51100 -19.76621 -17.99532 -17.59497 -17.00631 -16.79825 -15.89560 -15.19283 -15.10047 -14.81476 -14.61740 -14.41067 -14.12672 -13.91624 -13.76705 -13.48788 -13.44757 -13.22527 -13.06158 -12.94831 -12.64107 -12.43608 -12.41812 -12.18086 -12.10014 -12.07028 -11.70974 -11.66025 -11.29048 -11.24587 -11.19372 -10.96229 -10.88738 -10.63877 -10.53095 -10.24501 -10.10039 -9.88237 -9.68354 -9.42352 -9.05745 -8.51434 -6.94885 -5.89632 -3.26225 0.86626 1.35278 1.42194 2.81132 3.15114 3.34562 3.51445 3.54409 3.64781 3.93558 3.94211 4.05464 4.40968 4.56941 4.83039 4.86287 4.88086 4.95857 5.02231 5.02936 5.07186 5.08432 5.13274 5.16807 5.26915 5.34646 5.46134 5.46773 5.52770 5.63471 5.76523 5.81802 5.86127 5.88214 5.95527 6.04038 6.14701 6.27972 6.37293 6.45520 6.50624 6.61089 6.67211 6.76076 6.95315 7.47688 7.98762 8.01464 8.18400 8.38965 8.98659 9.76270 10.11725 11.26289 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.002607 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.671776 B =10736.687168 C =11426.729456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.126 4.126 5 C 0.121 3.879 6 N -0.600 5.600 7 C -0.258 4.258 8 H 0.087 0.913 9 C 0.023 3.977 10 N -0.908 5.908 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.142 3.858 16 C 0.132 3.868 17 H 0.096 0.904 18 N -0.696 5.696 19 C 0.612 3.388 20 O -0.500 6.500 21 C 0.131 3.869 22 N -0.259 5.259 23 N -0.058 5.058 24 N -0.126 5.126 25 C 0.176 3.824 26 C -0.161 4.161 27 C -0.153 4.153 28 C -0.161 4.161 29 N -0.245 5.245 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.262 0.738 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.405 0.595 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.934 11.646 -18.970 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.090 0.910 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.324 5.324 7 C -0.386 4.386 8 H 0.105 0.895 9 C -0.175 4.175 10 N -0.551 5.551 11 Si 0.713 3.287 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.196 1.196 15 C 0.015 3.985 16 C 0.028 3.972 17 H 0.114 0.886 18 N -0.348 5.348 19 C 0.390 3.610 20 O -0.370 6.370 21 C -0.153 4.153 22 N -0.133 5.133 23 N -0.051 5.051 24 N -0.041 5.041 25 C 0.096 3.904 26 C -0.219 4.219 27 C -0.211 4.211 28 C -0.220 4.220 29 N -0.097 5.097 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.241 0.759 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.781 11.104 -19.274 28.477 hybrid contribution 0.345 0.911 0.949 1.360 sum -17.435 12.014 -18.326 28.003 Atomic orbital electron populations 1.21858 0.95390 1.01912 1.01170 1.21310 0.95202 0.99752 0.94820 0.91020 1.22075 0.98253 1.00723 0.95494 1.21417 0.91753 0.97039 0.90227 1.44278 1.48652 1.40479 0.98982 1.18954 1.09599 1.02559 1.07513 0.89518 1.25266 0.97441 0.96676 0.98164 1.69847 1.32616 1.21955 1.30632 0.86953 0.76260 0.84898 0.80567 1.21605 1.23228 1.19578 1.21242 0.90021 0.97091 0.90142 1.21889 0.96623 0.97434 0.81285 0.88637 1.45802 1.64869 1.14869 1.09281 1.16117 0.78821 0.85504 0.80529 1.90908 1.48220 1.14623 1.83256 1.25485 1.05039 0.89919 0.94851 1.76121 1.13840 1.14567 1.08811 1.78848 1.16462 1.10711 0.99059 1.50749 1.37230 1.03690 1.12461 1.21522 0.98080 0.99643 0.71149 1.22265 0.97168 0.98104 1.04360 1.22108 1.03021 0.93997 1.01955 1.22271 0.95251 1.03666 1.00788 1.75022 1.14556 1.18727 1.01441 0.92710 0.92993 0.92637 0.91278 0.92072 0.95575 0.90684 0.92797 0.95667 0.91236 0.75937 0.91313 0.88944 0.90103 0.90472 0.89084 0.90525 0.90069 0.88948 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.02 37.16 0.34 -1.45 16 2 C -0.09 -1.36 2.27 -90.58 -0.21 -1.57 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.14 5.36 -26.61 -0.14 -2.29 16 5 C 0.12 2.61 4.20 -3.71 -0.02 2.59 16 6 N -0.60 -14.51 2.77 -172.31 -0.48 -14.99 16 7 C -0.26 -7.41 10.04 -15.06 -0.15 -7.56 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 10 N -0.91 -28.33 13.97 55.49 0.78 -27.55 16 11 Si 0.88 22.56 24.35 -169.99 -4.14 18.42 16 12 H -0.29 -7.04 6.62 56.52 0.37 -6.67 16 13 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 14 H -0.27 -6.78 6.64 56.52 0.38 -6.40 16 15 C 0.14 2.95 6.09 -3.71 -0.02 2.92 16 16 C 0.13 2.27 2.06 -67.81 -0.14 2.13 16 17 H 0.10 1.87 7.58 -51.93 -0.39 1.47 16 18 N -0.70 -10.28 4.37 -54.58 -0.24 -10.51 16 19 C 0.61 10.17 7.80 -12.26 -0.10 10.07 16 20 O -0.50 -10.17 16.76 5.33 0.09 -10.08 16 21 C 0.13 1.97 8.14 -156.24 -1.27 0.70 16 22 N -0.26 -3.55 12.26 32.10 0.39 -3.16 16 23 N -0.06 -0.71 12.21 60.35 0.74 0.03 16 24 N -0.13 -1.39 3.72 0.53 0.00 -1.39 16 25 C 0.18 1.16 1.30 -131.81 -0.17 0.99 16 26 C -0.16 -0.85 8.66 37.16 0.32 -0.53 16 27 C -0.15 -0.67 7.90 37.16 0.29 -0.37 16 28 C -0.16 -0.90 8.66 37.16 0.32 -0.58 16 29 N -0.24 -3.43 11.85 32.11 0.38 -3.05 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.58 7.35 -51.93 -0.38 0.20 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.55 7.08 -51.93 -0.37 0.18 16 36 H 0.08 1.78 4.50 -51.93 -0.23 1.54 16 37 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 40 H 0.41 5.03 8.05 -40.82 -0.33 4.70 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -34.76 390.34 -5.70 -40.46 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.07 Total: 0.29 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.03 Total: 5.65 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 1.57 Total: -60.62 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.14 Total: 18.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.76 -5.70 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966239608.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.828 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds