Wall clock time and date at job start Tue Mar 31 2020 21:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.45101 * 2 1 4 4 C 1.53039 * 109.46013 * 119.96349 * 2 1 3 5 5 C 1.53191 * 109.31397 * 181.38419 * 4 2 1 6 6 N 1.46930 * 108.77811 * 305.36966 * 5 4 2 7 7 C 1.36932 * 120.63126 * 233.63023 * 6 5 4 8 8 H 1.08000 * 119.99981 * 152.61910 * 7 6 5 9 9 C 1.38822 * 119.99922 * 332.61975 * 7 6 5 10 10 N 1.31621 * 119.99743 * 159.34327 * 9 7 6 11 11 Si 1.86794 * 119.99899 * 339.34398 * 9 7 6 12 12 H 1.48498 * 109.47080 * 92.96250 * 11 9 7 13 13 H 1.48496 * 109.47013 * 212.96148 * 11 9 7 14 14 H 1.48503 * 109.47413 * 332.96145 * 11 9 7 15 15 C 1.46927 * 118.74034 * 53.60465 * 6 5 4 16 16 C 1.53037 * 109.45996 * 240.03459 * 2 1 3 17 17 H 1.08997 * 109.49777 * 298.56316 * 16 2 1 18 18 N 1.46499 * 109.52664 * 58.64988 * 16 2 1 19 19 C 1.34776 * 120.00181 * 204.85489 * 18 16 2 20 20 O 1.21537 * 119.99657 * 359.97438 * 19 18 16 21 21 C 1.48001 * 120.00129 * 179.97438 * 19 18 16 22 22 N 1.34192 * 126.69826 * 359.69187 * 21 19 18 23 23 N 1.28985 * 107.25037 * 179.89107 * 22 21 19 24 24 N 1.28719 * 108.98672 * 0.36921 * 23 22 21 25 25 C 1.46508 * 125.31938 * 179.79696 * 24 23 22 26 26 C 1.53005 * 109.46893 * 239.96711 * 25 24 23 27 27 C 1.53007 * 109.46879 * 359.96181 * 25 24 23 28 28 C 1.52999 * 109.47089 * 119.96085 * 25 24 23 29 29 N 1.28870 * 109.36494 * 359.76595 * 24 23 22 30 30 H 1.09004 * 109.46978 * 300.03630 * 1 2 3 31 31 H 1.09000 * 109.47158 * 60.03280 * 1 2 3 32 32 H 1.08996 * 109.47172 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49375 * 61.43916 * 4 2 1 34 34 H 1.08996 * 109.49893 * 301.33533 * 4 2 1 35 35 H 1.09007 * 109.58671 * 65.15367 * 5 4 2 36 36 H 1.08999 * 109.58773 * 185.43627 * 5 4 2 37 37 H 0.96999 * 119.99630 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.58479 * 66.17446 * 15 6 5 39 39 H 1.08993 * 109.59116 * 186.60516 * 15 6 5 40 40 H 0.97006 * 119.99974 * 24.84813 * 18 16 2 41 41 H 1.08993 * 109.47214 * 59.99708 * 26 25 24 42 42 H 1.09004 * 109.46901 * 179.97438 * 26 25 24 43 43 H 1.09002 * 109.46591 * 299.99342 * 26 25 24 44 44 H 1.08999 * 109.46786 * 60.00295 * 27 25 24 45 45 H 1.08995 * 109.46802 * 180.02562 * 27 25 24 46 46 H 1.09004 * 109.46937 * 299.99855 * 27 25 24 47 47 H 1.09006 * 109.46708 * 60.00561 * 28 25 24 48 48 H 1.08995 * 109.46853 * 179.97438 * 28 25 24 49 49 H 1.08995 * 109.47273 * 300.00020 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6886 1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9758 -2.2739 0.0000 8 1 5.0119 -2.9632 -0.8306 9 6 5.8497 -2.4271 1.0677 10 7 6.4255 -3.5906 1.2850 11 14 6.2083 -0.9822 2.1958 12 1 5.2798 -1.0162 3.3542 13 1 7.6089 -1.0691 2.6814 14 1 6.0214 0.2875 1.4487 15 6 3.5715 -0.6886 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6979 -1.7556 -1.2383 18 7 1.5257 -0.0493 -2.4463 19 6 1.4003 -0.7326 -3.6012 20 8 1.7143 -1.9057 -3.6504 21 6 0.8803 -0.0545 -4.8096 22 7 0.4905 1.2260 -4.9055 23 7 0.1085 1.4194 -6.1222 24 7 0.2354 0.3208 -6.7807 25 6 -0.0999 0.1374 -8.1951 26 6 -1.1755 -0.9426 -8.3282 27 6 -0.6260 1.4545 -8.7693 28 6 1.1512 -0.2909 -8.9645 29 7 0.7043 -0.5926 -6.0018 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6979 -1.7556 1.2383 34 1 1.6573 -0.2206 2.1398 35 1 3.9143 0.3410 1.3674 36 1 3.9416 -1.2824 2.1000 37 1 7.0364 -3.6975 2.0308 38 1 3.9143 0.3410 -1.3673 39 1 3.9417 -1.2844 -2.0984 40 1 1.2753 0.8871 -2.4072 41 1 -2.0667 -0.6374 -7.7801 42 1 -1.4253 -1.0787 -9.3805 43 1 -0.8007 -1.8809 -7.9191 44 1 0.1402 2.2239 -8.6744 45 1 -0.8759 1.3179 -9.8214 46 1 -1.5173 1.7596 -8.2211 47 1 1.5258 -1.2292 -8.5553 48 1 0.9015 -0.4277 -10.0166 49 1 1.9173 0.4786 -8.8696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966239608.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:48 Heat of formation + Delta-G solvation = 87.465602 kcal Electronic energy + Delta-G solvation = -29908.686714 eV Core-core repulsion = 25908.725708 eV Total energy + Delta-G solvation = -3999.961006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.61888 -41.26926 -39.45495 -38.60884 -36.39808 -34.87088 -34.56441 -33.57505 -33.40853 -31.00654 -29.24031 -28.60635 -28.55012 -26.78719 -25.63144 -25.48889 -24.08783 -22.93148 -22.16554 -21.60329 -21.22932 -19.12193 -18.79822 -18.56652 -17.75815 -17.43288 -17.09033 -16.44582 -15.81191 -15.69503 -15.30002 -15.27245 -15.23406 -15.14376 -15.03861 -14.68353 -14.44618 -14.06539 -13.78996 -13.60674 -13.49125 -13.31628 -13.29270 -13.23232 -12.85543 -12.71101 -12.66498 -12.63200 -12.51350 -12.37607 -12.20823 -12.12860 -12.12165 -11.83079 -11.69871 -11.55410 -11.49251 -11.34998 -11.24418 -10.81673 -10.32038 -8.94667 -8.17018 -5.51136 -0.18087 0.23433 0.61840 1.30928 1.43045 1.53243 1.61816 1.85797 2.41926 2.73419 2.90821 3.07131 3.35721 3.47521 3.56731 3.63372 3.68290 3.90543 3.96579 3.98747 4.27664 4.29967 4.38074 4.41209 4.51454 4.51932 4.57357 4.58765 4.59547 4.72512 4.72684 4.82380 4.83648 4.93552 4.98217 4.99828 5.01653 5.09661 5.10098 5.14969 5.16655 5.22154 5.25271 5.40147 5.53515 5.84261 6.10869 6.21489 6.84204 6.90533 7.02295 7.59338 7.97256 9.03256 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.002607 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.671776 B =10736.687168 C =11426.729456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 H 0.095 0.905 4 C -0.119 4.119 5 C 0.112 3.888 6 N -0.615 5.615 7 C -0.255 4.255 8 H 0.037 0.963 9 C -0.037 4.037 10 N -0.959 5.959 11 Si 0.957 3.043 12 H -0.265 1.265 13 H -0.312 1.312 14 H -0.257 1.257 15 C 0.142 3.858 16 C 0.146 3.854 17 H 0.065 0.935 18 N -0.677 5.677 19 C 0.614 3.386 20 O -0.547 6.547 21 C 0.116 3.884 22 N -0.261 5.261 23 N -0.055 5.055 24 N -0.109 5.109 25 C 0.159 3.841 26 C -0.158 4.158 27 C -0.149 4.149 28 C -0.159 4.159 29 N -0.261 5.261 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.263 0.737 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.422 0.578 41 H 0.064 0.936 42 H 0.129 0.871 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.127 0.873 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.130 0.870 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.431 15.313 -19.554 32.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 H 0.114 0.886 4 C -0.158 4.158 5 C -0.012 4.012 6 N -0.340 5.340 7 C -0.385 4.385 8 H 0.055 0.945 9 C -0.231 4.231 10 N -0.605 5.605 11 Si 0.785 3.215 12 H -0.191 1.191 13 H -0.241 1.241 14 H -0.181 1.181 15 C 0.016 3.984 16 C 0.041 3.959 17 H 0.083 0.917 18 N -0.330 5.330 19 C 0.395 3.605 20 O -0.420 6.420 21 C -0.167 4.167 22 N -0.136 5.136 23 N -0.047 5.047 24 N -0.026 5.026 25 C 0.081 3.919 26 C -0.216 4.216 27 C -0.206 4.206 28 C -0.218 4.218 29 N -0.115 5.115 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.260 0.740 41 H 0.083 0.917 42 H 0.148 0.852 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.145 0.855 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.148 0.852 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.340 14.851 -19.870 32.079 hybrid contribution 1.073 -0.291 0.896 1.428 sum -19.266 14.560 -18.974 30.712 Atomic orbital electron populations 1.21798 0.92841 1.01880 1.03073 1.21293 0.97176 0.99979 0.91831 0.88639 1.21997 0.94798 1.00748 0.98278 1.21573 0.94853 0.96940 0.87798 1.44333 1.48385 1.39972 1.01286 1.18776 1.10813 1.02868 1.05996 0.94465 1.25984 0.97403 0.99256 1.00469 1.69999 1.34057 1.24298 1.32122 0.85761 0.75682 0.81072 0.79020 1.19150 1.24082 1.18108 1.21291 0.92481 0.96917 0.87731 1.21511 0.93999 0.96875 0.83565 0.91684 1.45551 1.63896 1.15380 1.08149 1.16319 0.77956 0.84975 0.81286 1.90887 1.50309 1.16746 1.84106 1.25050 1.06544 0.90530 0.94595 1.76080 1.14069 1.13777 1.09658 1.78775 1.16258 1.10993 0.98654 1.51322 1.35210 1.02627 1.13457 1.22232 0.99084 1.01636 0.68972 1.22311 0.96220 0.96449 1.06608 1.22180 1.02396 0.92214 1.03857 1.22320 0.94552 1.02197 1.02684 1.74991 1.15012 1.19841 1.01611 0.90175 0.91728 0.93715 0.93004 0.88216 0.93729 0.92968 0.92822 0.93712 0.94705 0.74004 0.91697 0.85220 0.92107 0.91109 0.85460 0.90895 0.92164 0.85181 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.02 71.98 0.65 -2.26 16 2 C -0.08 -2.24 2.27 -10.77 -0.02 -2.26 16 3 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -3.74 5.36 30.67 0.16 -3.57 16 5 C 0.11 4.64 4.20 86.36 0.36 5.00 16 6 N -0.61 -30.21 2.77 -699.06 -1.94 -32.15 16 7 C -0.25 -15.41 10.04 84.04 0.84 -14.56 16 8 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 9 C -0.04 -2.22 5.23 84.86 0.44 -1.77 16 10 N -0.96 -62.55 13.97 21.66 0.30 -62.25 16 11 Si 0.96 47.10 24.35 68.60 1.67 48.77 16 12 H -0.27 -12.01 6.62 99.48 0.66 -11.35 16 13 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 14 H -0.26 -11.93 6.64 99.48 0.66 -11.27 16 15 C 0.14 6.01 6.09 86.37 0.53 6.53 16 16 C 0.15 4.98 2.06 45.07 0.09 5.07 16 17 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 18 N -0.68 -19.62 4.37 -444.88 -1.94 -21.57 16 19 C 0.61 20.99 7.80 86.83 0.68 21.66 16 20 O -0.55 -23.62 16.76 -3.83 -0.06 -23.68 16 21 C 0.12 3.51 8.14 137.15 1.12 4.62 16 22 N -0.26 -6.94 12.26 -52.36 -0.64 -7.58 16 23 N -0.05 -1.27 12.21 37.02 0.45 -0.81 16 24 N -0.11 -2.33 3.72 -152.23 -0.57 -2.89 16 25 C 0.16 1.81 1.30 3.61 0.00 1.81 16 26 C -0.16 -1.36 8.66 71.98 0.62 -0.74 16 27 C -0.15 -0.87 7.90 71.98 0.57 -0.31 16 28 C -0.16 -1.52 8.66 71.98 0.62 -0.89 16 29 N -0.26 -7.39 11.85 -52.31 -0.62 -8.01 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.21 7.35 -2.39 -0.02 1.19 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.04 1.70 7.08 -2.38 -0.02 1.69 16 36 H 0.05 2.39 4.50 -2.39 -0.01 2.38 16 37 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 38 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.03 1.67 7.93 -2.39 -0.02 1.65 16 40 H 0.42 9.59 8.05 -92.70 -0.75 8.84 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 42 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 47 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -82.02 390.34 3.44 -78.59 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.11 Total: 13.24 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 6.67 Total: 18.34 kcal Atomic # 7 Polarization: -130.30 SS G_CDS: -4.95 Total: -135.25 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.06 Total: -23.68 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.67 Total: 48.77 kcal Total: -82.02 3.44 -78.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966239608.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.052 kcal (2) G-P(sol) polarization free energy of solvation -82.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds