Wall clock time and date at job start Tue Mar 31 2020 21:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46316 * 2 1 4 4 C 1.53070 * 109.45760 * 119.81974 * 2 1 3 5 5 C 1.53186 * 109.29750 * 181.24487 * 4 2 1 6 6 N 1.46923 * 108.89231 * 305.57426 * 5 4 2 7 7 C 1.36943 * 120.63291 * 233.51524 * 6 5 4 8 8 H 1.07997 * 119.99795 * 27.69142 * 7 6 5 9 9 C 1.38810 * 119.99973 * 207.68610 * 7 6 5 10 10 N 1.31620 * 120.00304 * 17.36784 * 9 7 6 11 11 Si 1.86807 * 119.99906 * 197.36876 * 9 7 6 12 12 H 1.48495 * 109.46871 * 90.00036 * 11 9 7 13 13 H 1.48494 * 109.46998 * 210.00166 * 11 9 7 14 14 H 1.48503 * 109.46712 * 330.00114 * 11 9 7 15 15 C 1.46932 * 118.74032 * 53.54134 * 6 5 4 16 16 C 1.53047 * 109.46060 * 240.03022 * 2 1 3 17 17 H 1.09004 * 109.49380 * 58.66259 * 16 2 1 18 18 N 1.46494 * 109.52269 * 298.58349 * 16 2 1 19 19 C 1.34787 * 119.99894 * 155.14690 * 18 16 2 20 20 O 1.21527 * 120.00114 * 359.97438 * 19 18 16 21 21 C 1.47999 * 119.99721 * 179.97438 * 19 18 16 22 22 N 1.34193 * 126.70316 * 0.02562 * 21 19 18 23 23 N 1.28981 * 107.25496 * 179.97438 * 22 21 19 24 24 N 1.28721 * 108.98592 * 0.02562 * 23 22 21 25 25 C 1.46505 * 125.31674 * 180.02562 * 24 23 22 26 26 C 1.53005 * 109.47263 * 0.02562 * 25 24 23 27 27 C 1.52993 * 109.47081 * 120.02014 * 25 24 23 28 28 C 1.53001 * 109.46701 * 240.01934 * 25 24 23 29 29 N 1.28866 * 109.35995 * 359.72198 * 24 23 22 30 30 H 1.09008 * 109.46900 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46997 * 299.96907 * 1 2 3 32 32 H 1.08997 * 109.47421 * 59.97268 * 1 2 3 33 33 H 1.09001 * 109.38737 * 61.36156 * 4 2 1 34 34 H 1.08999 * 109.61807 * 301.26580 * 4 2 1 35 35 H 1.08998 * 109.58308 * 185.72212 * 5 4 2 36 36 H 1.08996 * 109.58955 * 65.43345 * 5 4 2 37 37 H 0.96993 * 120.00122 * 179.97438 * 10 9 7 38 38 H 1.08996 * 109.58625 * 66.17198 * 15 6 5 39 39 H 1.08997 * 109.58616 * 186.60382 * 15 6 5 40 40 H 0.97002 * 120.00082 * 335.14178 * 18 16 2 41 41 H 1.09000 * 109.47037 * 60.00270 * 26 25 24 42 42 H 1.08990 * 109.46712 * 180.02562 * 26 25 24 43 43 H 1.08997 * 109.46983 * 300.00452 * 26 25 24 44 44 H 1.09005 * 109.47338 * 59.99956 * 27 25 24 45 45 H 1.08999 * 109.47310 * 179.97438 * 27 25 24 46 46 H 1.09000 * 109.47604 * 299.99329 * 27 25 24 47 47 H 1.09004 * 109.46961 * 60.00172 * 28 25 24 48 48 H 1.09001 * 109.46978 * 179.97438 * 28 25 24 49 49 H 1.08997 * 109.47417 * 299.99962 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7177 1.2522 5 6 3.5714 -0.6884 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9765 -2.2733 0.0000 8 1 5.0098 -2.9655 0.8284 9 6 5.8547 -2.4222 -1.0646 10 7 6.0604 -1.4204 -1.8932 11 14 6.7446 -4.0445 -1.3215 12 1 5.9274 -4.9243 -2.1951 13 1 8.0591 -3.7915 -1.9643 14 1 6.9545 -4.7070 -0.0091 15 6 3.5714 -0.6886 -1.2644 16 6 2.0399 -0.7209 -1.2501 17 1 1.6572 -0.2208 -2.1399 18 7 1.5801 -2.1117 -1.2349 19 6 1.4547 -2.7926 -2.3914 20 8 1.7225 -2.2527 -3.4466 21 6 0.9908 -4.1980 -2.3760 22 7 0.6598 -4.9215 -1.2954 23 7 0.3098 -6.0914 -1.7108 24 7 0.4084 -6.1270 -2.9937 25 6 0.0982 -7.2856 -3.8351 26 6 -0.3623 -8.4479 -2.9530 27 6 -1.0158 -6.9187 -4.8175 28 6 1.3486 -7.6999 -4.6134 29 7 0.8165 -4.9825 -3.4228 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8902 32 1 -0.3634 0.5142 -0.8897 33 1 1.6958 -1.7519 1.2419 34 1 1.6593 -0.2162 2.1420 35 1 3.9417 -1.2843 2.0983 36 1 3.9164 0.3403 1.3684 37 1 6.6743 -1.5243 -2.6368 38 1 3.9142 0.3409 -1.3675 39 1 3.9417 -1.2846 -2.0984 40 1 1.3660 -2.5426 -0.3927 41 1 -1.2531 -8.1526 -2.3987 42 1 -0.5926 -9.3098 -3.5790 43 1 0.4313 -8.7092 -2.2530 44 1 -0.6879 -6.0906 -5.4460 45 1 -1.2463 -7.7805 -5.4439 46 1 -1.9066 -6.6235 -4.2631 47 1 2.1422 -7.9613 -3.9134 48 1 1.1180 -8.5622 -5.2390 49 1 1.6765 -6.8719 -5.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966239610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:54 Heat of formation + Delta-G solvation = 109.257024 kcal Electronic energy + Delta-G solvation = -31006.833415 eV Core-core repulsion = 27007.817356 eV Total energy + Delta-G solvation = -3999.016059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.28704 -39.58214 -37.90327 -37.39689 -34.15924 -33.47713 -32.86573 -32.22838 -30.97529 -29.25112 -27.98635 -27.92589 -27.32780 -25.18419 -24.38842 -23.92960 -22.18810 -21.07688 -20.90517 -20.59399 -18.64355 -17.93499 -17.28840 -16.79481 -16.67069 -15.25402 -14.95990 -14.71852 -14.58411 -14.32092 -14.00025 -13.92348 -13.75461 -13.57834 -13.28942 -13.18889 -12.97550 -12.83637 -12.75284 -12.56407 -12.23135 -12.15828 -11.93356 -11.86384 -11.54748 -11.48435 -11.38969 -11.08336 -10.93880 -10.88404 -10.87349 -10.72047 -10.46434 -10.21546 -10.17609 -9.92227 -9.81566 -9.59695 -9.46542 -8.44039 -8.40966 -6.61446 -5.73019 -3.14930 1.17969 1.71118 1.71961 3.21153 3.40451 3.47493 3.48032 3.59838 3.89996 4.14615 4.24426 4.35054 4.53931 4.73919 5.02724 5.03602 5.08647 5.20337 5.21504 5.26365 5.27948 5.28712 5.37540 5.44802 5.48356 5.56359 5.60203 5.68031 5.73950 5.88396 5.92827 5.97295 6.05214 6.16834 6.20106 6.30814 6.39011 6.47637 6.56157 6.66393 6.79592 6.89203 7.01312 7.35292 7.68251 7.85223 7.94871 8.35462 8.50627 8.61490 9.25910 9.90022 10.45234 11.35107 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.004447 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.192213 B = 6294.375686 C = 7865.782919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.081 0.919 4 C -0.131 4.131 5 C 0.143 3.857 6 N -0.587 5.587 7 C -0.250 4.250 8 H 0.064 0.936 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.291 1.291 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.159 3.841 16 C 0.126 3.874 17 H 0.081 0.919 18 N -0.672 5.672 19 C 0.613 3.387 20 O -0.516 6.516 21 C 0.139 3.861 22 N -0.255 5.255 23 N -0.062 5.062 24 N -0.130 5.130 25 C 0.178 3.822 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.162 4.162 29 N -0.250 5.250 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.254 0.746 38 H 0.030 0.970 39 H 0.098 0.902 40 H 0.405 0.595 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.155 -9.599 -2.209 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.099 0.901 4 C -0.171 4.171 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.380 4.380 8 H 0.082 0.918 9 C -0.192 4.192 10 N -0.542 5.542 11 Si 0.725 3.275 12 H -0.218 1.218 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.032 3.968 16 C 0.020 3.980 17 H 0.099 0.901 18 N -0.323 5.323 19 C 0.391 3.609 20 O -0.389 6.389 21 C -0.145 4.145 22 N -0.129 5.129 23 N -0.054 5.054 24 N -0.045 5.045 25 C 0.097 3.903 26 C -0.210 4.210 27 C -0.217 4.217 28 C -0.220 4.220 29 N -0.102 5.102 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.116 0.884 40 H 0.242 0.758 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.109 0.891 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.012 -9.725 -2.869 18.953 hybrid contribution 0.674 -0.733 0.006 0.996 sum -15.338 -10.458 -2.863 18.783 Atomic orbital electron populations 1.21869 0.95912 1.01532 1.01040 1.21317 0.94684 0.99917 0.95269 0.90117 1.22107 0.99202 0.99701 0.96056 1.20927 0.90699 0.96540 0.90190 1.43980 1.48196 1.39622 0.99187 1.19108 1.09733 1.03031 1.06126 0.91787 1.24965 0.97244 0.97069 0.99922 1.69988 1.37600 1.28816 1.17775 0.86403 0.78917 0.84270 0.77914 1.21838 1.21668 1.20429 1.21232 0.86342 0.98062 0.91159 1.21959 0.99280 0.79269 0.97447 0.90140 1.45568 1.65050 1.14012 1.07699 1.16039 0.78670 0.80941 0.85202 1.90817 1.49901 1.67410 1.30740 1.25545 1.04577 0.99195 0.85191 1.76127 1.14203 0.97396 1.25222 1.78821 1.16404 1.15615 0.94609 1.50671 1.38879 1.09948 1.04987 1.21443 0.98130 0.80690 0.90051 1.22092 1.03449 0.95541 0.99930 1.22243 0.96705 1.04087 0.98698 1.22270 0.95382 1.03535 1.00848 1.74979 1.15686 0.92966 1.26613 0.92941 0.93005 0.93050 0.92479 0.92573 0.92755 0.96356 0.93622 0.95235 0.88421 0.75805 0.90562 0.89263 0.90462 0.90190 0.89139 0.91376 0.91191 0.89114 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.05 37.16 0.34 -1.59 16 2 C -0.09 -1.46 2.47 -90.56 -0.22 -1.69 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.13 -2.12 5.21 -26.60 -0.14 -2.26 16 5 C 0.14 2.88 6.51 -3.72 -0.02 2.85 16 6 N -0.59 -14.41 2.92 -172.33 -0.50 -14.91 16 7 C -0.25 -6.91 9.59 -15.06 -0.14 -7.05 16 8 H 0.06 1.76 7.89 -52.49 -0.41 1.34 16 9 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 10 N -0.90 -26.82 11.19 55.49 0.62 -26.20 16 11 Si 0.89 22.82 29.59 -169.99 -5.03 17.79 16 12 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.16 3.82 4.91 -3.71 -0.02 3.80 16 16 C 0.13 2.42 2.24 -67.81 -0.15 2.27 16 17 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 18 N -0.67 -12.94 4.25 -54.58 -0.23 -13.17 16 19 C 0.61 12.87 7.80 -12.25 -0.10 12.78 16 20 O -0.52 -12.24 16.76 5.34 0.09 -12.15 16 21 C 0.14 2.70 8.14 -156.24 -1.27 1.43 16 22 N -0.25 -4.63 12.26 32.10 0.39 -4.23 16 23 N -0.06 -0.98 12.21 60.35 0.74 -0.25 16 24 N -0.13 -1.89 3.72 0.53 0.00 -1.89 16 25 C 0.18 1.68 1.30 -131.82 -0.17 1.51 16 26 C -0.15 -1.07 7.90 37.16 0.29 -0.77 16 27 C -0.16 -1.19 8.65 37.15 0.32 -0.87 16 28 C -0.16 -1.41 8.67 37.16 0.32 -1.09 16 29 N -0.25 -4.44 11.85 32.11 0.38 -4.06 16 30 H 0.05 0.70 7.54 -51.92 -0.39 0.31 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.94 6.42 -51.93 -0.33 0.61 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 2.78 6.04 -51.93 -0.31 2.47 16 40 H 0.41 7.39 6.40 -40.82 -0.26 7.13 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -33.80 393.64 -6.65 -40.45 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.00 Total: 3.26 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -1.05 Total: 9.44 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: 1.40 Total: -64.71 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.03 Total: 17.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.80 -6.65 -40.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966239610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.709 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds