Wall clock time and date at job start Tue Mar 31 2020 21:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46316 * 2 1 4 4 C 1.53070 * 109.45760 * 119.81974 * 2 1 3 5 5 C 1.53186 * 109.29750 * 181.24487 * 4 2 1 6 6 N 1.46923 * 108.89231 * 305.57426 * 5 4 2 7 7 C 1.36943 * 120.63291 * 233.51524 * 6 5 4 8 8 H 1.07997 * 119.99795 * 27.69142 * 7 6 5 9 9 C 1.38810 * 119.99973 * 207.68610 * 7 6 5 10 10 N 1.31620 * 120.00304 * 17.36784 * 9 7 6 11 11 Si 1.86807 * 119.99906 * 197.36876 * 9 7 6 12 12 H 1.48495 * 109.46871 * 90.00036 * 11 9 7 13 13 H 1.48494 * 109.46998 * 210.00166 * 11 9 7 14 14 H 1.48503 * 109.46712 * 330.00114 * 11 9 7 15 15 C 1.46932 * 118.74032 * 53.54134 * 6 5 4 16 16 C 1.53047 * 109.46060 * 240.03022 * 2 1 3 17 17 H 1.09004 * 109.49380 * 58.66259 * 16 2 1 18 18 N 1.46494 * 109.52269 * 298.58349 * 16 2 1 19 19 C 1.34787 * 119.99894 * 155.14690 * 18 16 2 20 20 O 1.21527 * 120.00114 * 359.97438 * 19 18 16 21 21 C 1.47999 * 119.99721 * 179.97438 * 19 18 16 22 22 N 1.34193 * 126.70316 * 0.02562 * 21 19 18 23 23 N 1.28981 * 107.25496 * 179.97438 * 22 21 19 24 24 N 1.28721 * 108.98592 * 0.02562 * 23 22 21 25 25 C 1.46505 * 125.31674 * 180.02562 * 24 23 22 26 26 C 1.53005 * 109.47263 * 0.02562 * 25 24 23 27 27 C 1.52993 * 109.47081 * 120.02014 * 25 24 23 28 28 C 1.53001 * 109.46701 * 240.01934 * 25 24 23 29 29 N 1.28866 * 109.35995 * 359.72198 * 24 23 22 30 30 H 1.09008 * 109.46900 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46997 * 299.96907 * 1 2 3 32 32 H 1.08997 * 109.47421 * 59.97268 * 1 2 3 33 33 H 1.09001 * 109.38737 * 61.36156 * 4 2 1 34 34 H 1.08999 * 109.61807 * 301.26580 * 4 2 1 35 35 H 1.08998 * 109.58308 * 185.72212 * 5 4 2 36 36 H 1.08996 * 109.58955 * 65.43345 * 5 4 2 37 37 H 0.96993 * 120.00122 * 179.97438 * 10 9 7 38 38 H 1.08996 * 109.58625 * 66.17198 * 15 6 5 39 39 H 1.08997 * 109.58616 * 186.60382 * 15 6 5 40 40 H 0.97002 * 120.00082 * 335.14178 * 18 16 2 41 41 H 1.09000 * 109.47037 * 60.00270 * 26 25 24 42 42 H 1.08990 * 109.46712 * 180.02562 * 26 25 24 43 43 H 1.08997 * 109.46983 * 300.00452 * 26 25 24 44 44 H 1.09005 * 109.47338 * 59.99956 * 27 25 24 45 45 H 1.08999 * 109.47310 * 179.97438 * 27 25 24 46 46 H 1.09000 * 109.47604 * 299.99329 * 27 25 24 47 47 H 1.09004 * 109.46961 * 60.00172 * 28 25 24 48 48 H 1.09001 * 109.46978 * 179.97438 * 28 25 24 49 49 H 1.08997 * 109.47417 * 299.99962 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7177 1.2522 5 6 3.5714 -0.6884 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9765 -2.2733 0.0000 8 1 5.0098 -2.9655 0.8284 9 6 5.8547 -2.4222 -1.0646 10 7 6.0604 -1.4204 -1.8932 11 14 6.7446 -4.0445 -1.3215 12 1 5.9274 -4.9243 -2.1951 13 1 8.0591 -3.7915 -1.9643 14 1 6.9545 -4.7070 -0.0091 15 6 3.5714 -0.6886 -1.2644 16 6 2.0399 -0.7209 -1.2501 17 1 1.6572 -0.2208 -2.1399 18 7 1.5801 -2.1117 -1.2349 19 6 1.4547 -2.7926 -2.3914 20 8 1.7225 -2.2527 -3.4466 21 6 0.9908 -4.1980 -2.3760 22 7 0.6598 -4.9215 -1.2954 23 7 0.3098 -6.0914 -1.7108 24 7 0.4084 -6.1270 -2.9937 25 6 0.0982 -7.2856 -3.8351 26 6 -0.3623 -8.4479 -2.9530 27 6 -1.0158 -6.9187 -4.8175 28 6 1.3486 -7.6999 -4.6134 29 7 0.8165 -4.9825 -3.4228 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8902 32 1 -0.3634 0.5142 -0.8897 33 1 1.6958 -1.7519 1.2419 34 1 1.6593 -0.2162 2.1420 35 1 3.9417 -1.2843 2.0983 36 1 3.9164 0.3403 1.3684 37 1 6.6743 -1.5243 -2.6368 38 1 3.9142 0.3409 -1.3675 39 1 3.9417 -1.2846 -2.0984 40 1 1.3660 -2.5426 -0.3927 41 1 -1.2531 -8.1526 -2.3987 42 1 -0.5926 -9.3098 -3.5790 43 1 0.4313 -8.7092 -2.2530 44 1 -0.6879 -6.0906 -5.4460 45 1 -1.2463 -7.7805 -5.4439 46 1 -1.9066 -6.6235 -4.2631 47 1 2.1422 -7.9613 -3.9134 48 1 1.1180 -8.5622 -5.2390 49 1 1.6765 -6.8719 -5.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966239610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:53 Heat of formation + Delta-G solvation = 85.977665 kcal Electronic energy + Delta-G solvation = -31007.842884 eV Core-core repulsion = 27007.817356 eV Total energy + Delta-G solvation = -4000.025528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.59599 -41.20356 -39.22184 -38.59629 -35.99977 -34.81490 -34.42533 -33.52810 -32.81702 -30.90697 -28.98316 -28.61683 -28.56960 -26.66874 -25.69382 -25.58905 -23.78962 -22.77496 -22.31142 -21.71836 -20.32359 -19.26877 -18.66342 -18.55177 -17.78629 -16.96495 -16.85102 -16.15369 -15.81804 -15.63745 -15.29305 -15.21601 -15.19233 -14.97852 -14.79586 -14.61771 -14.14108 -14.05955 -13.62201 -13.50664 -13.30189 -13.24848 -13.18158 -13.02987 -12.88498 -12.77709 -12.67805 -12.65086 -12.50168 -12.37100 -12.24306 -12.14305 -12.11107 -11.96252 -11.56463 -11.53083 -11.46682 -11.25437 -11.07382 -10.57309 -10.12132 -8.65698 -7.88701 -5.31625 -0.15509 0.27320 0.65915 1.33244 1.36329 1.43629 1.73548 2.01266 2.44447 2.83353 2.98768 3.26561 3.45587 3.55175 3.62651 3.68533 3.85870 3.99225 4.01730 4.13088 4.29107 4.38869 4.48832 4.50668 4.55843 4.58711 4.68590 4.69739 4.70407 4.71739 4.80571 4.87478 4.97866 4.98448 5.07580 5.08722 5.16795 5.19124 5.20009 5.24628 5.27064 5.46753 5.49394 5.56937 5.64723 5.70168 6.34481 6.37985 6.94423 7.06377 7.13323 7.87026 8.36550 9.16205 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.004447 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.192213 B = 6294.375686 C = 7865.782919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.088 0.912 4 C -0.119 4.119 5 C 0.137 3.863 6 N -0.601 5.601 7 C -0.247 4.247 8 H 0.066 0.934 9 C -0.047 4.047 10 N -0.929 5.929 11 Si 0.946 3.054 12 H -0.304 1.304 13 H -0.291 1.291 14 H -0.262 1.262 15 C 0.168 3.832 16 C 0.134 3.866 17 H 0.077 0.923 18 N -0.661 5.661 19 C 0.609 3.391 20 O -0.554 6.554 21 C 0.117 3.883 22 N -0.266 5.266 23 N -0.057 5.057 24 N -0.111 5.111 25 C 0.157 3.843 26 C -0.148 4.148 27 C -0.154 4.154 28 C -0.160 4.160 29 N -0.262 5.262 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.246 0.754 38 H 0.010 0.990 39 H 0.049 0.951 40 H 0.412 0.588 41 H 0.074 0.926 42 H 0.130 0.870 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.132 0.868 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.135 0.865 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.603 -11.364 -1.065 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 H 0.106 0.894 4 C -0.158 4.158 5 C 0.012 3.988 6 N -0.325 5.325 7 C -0.377 4.377 8 H 0.084 0.916 9 C -0.243 4.243 10 N -0.576 5.576 11 Si 0.776 3.224 12 H -0.232 1.232 13 H -0.218 1.218 14 H -0.186 1.186 15 C 0.041 3.959 16 C 0.029 3.971 17 H 0.095 0.905 18 N -0.312 5.312 19 C 0.389 3.611 20 O -0.429 6.429 21 C -0.167 4.167 22 N -0.140 5.140 23 N -0.049 5.049 24 N -0.028 5.028 25 C 0.079 3.921 26 C -0.206 4.206 27 C -0.213 4.213 28 C -0.219 4.219 29 N -0.116 5.116 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.028 0.972 39 H 0.067 0.933 40 H 0.250 0.750 41 H 0.093 0.907 42 H 0.148 0.852 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.150 0.850 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.153 0.847 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.488 -11.503 -1.653 21.837 hybrid contribution 1.407 -0.280 -0.373 1.482 sum -17.081 -11.784 -2.026 20.850 Atomic orbital electron populations 1.21787 0.93121 1.01919 1.02647 1.21296 0.96839 0.99482 0.92822 0.89360 1.21997 0.95747 1.00304 0.97773 1.21144 0.93545 0.96175 0.87955 1.44180 1.47980 1.39470 1.00841 1.19404 1.09198 1.03544 1.05590 0.91613 1.25592 0.98786 0.99465 1.00414 1.70135 1.38700 1.30415 1.18324 0.85569 0.77591 0.81195 0.78085 1.23247 1.21772 1.18627 1.20923 0.89535 0.95744 0.89655 1.21773 0.95803 0.79846 0.99717 0.90465 1.45500 1.64153 1.13928 1.07581 1.16312 0.78077 0.81662 0.85038 1.90784 1.51640 1.68524 1.31986 1.25218 1.06390 0.98904 0.86151 1.76075 1.14789 0.97929 1.25243 1.78728 1.16199 1.14692 0.95320 1.51331 1.36477 1.09981 1.04974 1.22262 0.99305 0.79891 0.90664 1.22174 1.02773 0.95583 1.00033 1.22292 0.95494 1.05226 0.98245 1.22333 0.94578 1.04372 1.00586 1.74933 1.16003 0.94019 1.26666 0.93164 0.90224 0.92679 0.92593 0.88657 0.92664 0.96184 0.94508 0.97177 0.93286 0.75015 0.90685 0.85153 0.91589 0.92101 0.84980 0.91494 0.92681 0.84715 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.05 71.98 0.65 -2.53 16 2 C -0.09 -2.52 2.47 -10.75 -0.03 -2.55 16 3 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 4 C -0.12 -3.52 5.21 30.68 0.16 -3.36 16 5 C 0.14 5.34 6.51 86.36 0.56 5.90 16 6 N -0.60 -29.92 2.92 -699.12 -2.04 -31.96 16 7 C -0.25 -13.84 9.59 84.03 0.81 -13.04 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 10 N -0.93 -58.03 11.19 21.65 0.24 -57.79 16 11 Si 0.95 48.15 29.59 68.60 2.03 50.18 16 12 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 13 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 14 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 15 C 0.17 8.42 4.91 86.36 0.42 8.85 16 16 C 0.13 5.22 2.24 45.07 0.10 5.32 16 17 H 0.08 3.07 7.58 -2.38 -0.02 3.05 16 18 N -0.66 -25.78 4.25 -444.88 -1.89 -27.67 16 19 C 0.61 26.51 7.80 86.83 0.68 27.18 16 20 O -0.55 -27.64 16.76 -3.80 -0.06 -27.71 16 21 C 0.12 4.65 8.14 137.15 1.12 5.76 16 22 N -0.27 -9.67 12.26 -52.37 -0.64 -10.32 16 23 N -0.06 -1.79 12.21 37.02 0.45 -1.34 16 24 N -0.11 -3.17 3.72 -152.25 -0.57 -3.73 16 25 C 0.16 2.68 1.30 3.60 0.00 2.68 16 26 C -0.15 -1.64 7.90 71.98 0.57 -1.07 16 27 C -0.15 -1.94 8.65 71.98 0.62 -1.32 16 28 C -0.16 -2.54 8.67 71.98 0.62 -1.91 16 29 N -0.26 -9.51 11.85 -52.32 -0.62 -10.13 16 30 H 0.05 1.20 7.54 -2.38 -0.02 1.18 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.70 6.42 -2.39 -0.02 1.68 16 34 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.05 2.95 6.04 -2.39 -0.01 2.93 16 40 H 0.41 14.87 6.40 -92.71 -0.59 14.27 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 48 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -78.50 393.64 3.96 -74.54 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.36 Total: 18.33 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 6.71 Total: 27.58 kcal Atomic # 7 Polarization: -137.86 SS G_CDS: -5.07 Total: -142.93 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.06 Total: -27.71 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -78.50 3.96 -74.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966239610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.514 kcal (2) G-P(sol) polarization free energy of solvation -78.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds