Wall clock time and date at job start Tue Mar 31 2020 21:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47203 * 2 1 4 4 C 1.50700 * 109.47266 * 120.00075 * 2 1 3 5 5 N 1.31079 * 126.65808 * 300.16777 * 4 2 1 6 6 N 1.28843 * 107.98775 * 180.23988 * 5 4 2 7 7 N 1.28732 * 109.39746 * 359.75911 * 6 5 4 8 8 N 1.29022 * 108.81151 * 359.97438 * 7 6 5 9 9 C 1.46503 * 126.43855 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47244 * 90.02499 * 9 8 7 11 11 O 1.21285 * 120.00284 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00213 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00617 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.49589 * 35.06380 * 13 12 10 15 15 C 1.53194 * 109.49991 * 275.00470 * 13 12 10 16 16 N 1.46923 * 108.77508 * 294.64969 * 15 13 12 17 17 C 1.36934 * 120.63543 * 126.37021 * 16 15 13 18 18 H 1.08003 * 119.99164 * 332.79102 * 17 16 15 19 19 C 1.38806 * 120.00254 * 153.06831 * 17 16 15 20 20 N 1.31620 * 119.99756 * 159.13051 * 19 17 16 21 21 Si 1.86797 * 120.00014 * 339.13222 * 19 17 16 22 22 H 1.48500 * 109.47157 * 93.09435 * 21 19 17 23 23 H 1.48499 * 109.47219 * 213.09568 * 21 19 17 24 24 H 1.48498 * 109.46981 * 333.09353 * 21 19 17 25 25 C 1.46930 * 118.73533 * 306.64194 * 16 15 13 26 26 C 1.52756 * 109.00914 * 53.31004 * 25 16 15 27 27 C 1.53034 * 109.52794 * 155.14740 * 13 12 10 28 28 H 1.09002 * 109.45957 * 178.61284 * 27 13 12 29 29 C 1.53006 * 109.45830 * 298.58524 * 27 13 12 30 30 H 1.09006 * 109.46878 * 300.00080 * 1 2 3 31 31 H 1.09004 * 109.46806 * 59.99797 * 1 2 3 32 32 H 1.08991 * 109.47244 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47116 * 239.99900 * 2 1 3 34 34 H 1.09006 * 109.46682 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47047 * 299.99959 * 3 2 1 36 36 H 1.08997 * 109.47166 * 59.99931 * 3 2 1 37 37 H 1.09002 * 109.47086 * 330.02222 * 9 8 7 38 38 H 1.08998 * 109.46601 * 210.02685 * 9 8 7 39 39 H 0.97005 * 119.99661 * 0.02562 * 12 10 9 40 40 H 1.09003 * 109.58662 * 174.85949 * 15 13 12 41 41 H 1.09002 * 109.70356 * 54.50227 * 15 13 12 42 42 H 0.97000 * 119.99511 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.58564 * 173.14640 * 25 16 15 44 44 H 1.08998 * 109.58600 * 293.56952 * 25 16 15 45 45 H 1.08999 * 109.56743 * 185.55259 * 26 25 16 46 46 H 1.08996 * 109.38799 * 65.51495 * 26 25 16 47 47 H 1.08995 * 109.47274 * 60.00140 * 29 27 13 48 48 H 1.09006 * 109.47002 * 180.02562 * 29 27 13 49 49 H 1.08999 * 109.47220 * 299.99850 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7950 -0.3801 2.4765 6 7 2.4015 -1.2268 3.2350 7 7 3.0153 -2.0915 2.5052 8 7 2.8088 -1.8093 1.2633 9 6 3.3279 -2.5428 0.1062 10 6 2.3494 -3.6195 -0.2863 11 8 1.3195 -3.7601 0.3386 12 7 2.6182 -4.4257 -1.3323 13 6 1.6672 -5.4728 -1.7136 14 1 0.6500 -5.1202 -1.5427 15 6 1.9220 -6.7265 -0.8709 16 7 3.2474 -7.2626 -1.2095 17 6 4.1754 -7.4988 -0.2308 18 1 4.1525 -6.9259 0.6846 19 6 5.1491 -8.4703 -0.4174 20 7 6.2583 -8.4348 0.2902 21 14 4.8852 -9.8281 -1.6728 22 1 5.4842 -9.4256 -2.9706 23 1 5.5319 -11.0766 -1.1951 24 1 3.4295 -10.0616 -1.8507 25 6 3.5602 -7.5347 -2.6191 26 6 3.2851 -6.2772 -3.4416 27 6 1.8478 -5.8132 -3.1947 28 1 1.1567 -6.6095 -3.4711 29 6 1.5603 -4.5718 -4.0417 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 4.2845 -2.9975 0.3636 38 1 3.4653 -1.8550 -0.7281 39 1 3.4418 -4.3130 -1.8324 40 1 1.1590 -7.4740 -1.0881 41 1 1.8913 -6.4700 0.1880 42 1 6.9389 -9.1135 0.1595 43 1 4.6109 -7.8090 -2.7138 44 1 2.9336 -8.3495 -2.9817 45 1 3.4195 -6.4971 -4.5007 46 1 3.9778 -5.4906 -3.1427 47 1 2.2509 -3.7752 -3.7651 48 1 1.6884 -4.8142 -5.0967 49 1 0.5362 -4.2419 -3.8669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968405974.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:04 Heat of formation + Delta-G solvation = 99.741303 kcal Electronic energy + Delta-G solvation = -30935.082392 eV Core-core repulsion = 26935.653700 eV Total energy + Delta-G solvation = -3999.428692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.15282 -40.19448 -38.20388 -36.35683 -35.34623 -34.57231 -33.15220 -31.55047 -31.48555 -30.33354 -28.79472 -27.61546 -27.52194 -24.48331 -24.15848 -23.50294 -22.81062 -21.51945 -21.26119 -20.59356 -19.14175 -18.10010 -17.71937 -16.85215 -16.28020 -15.93986 -15.68073 -15.34959 -15.23968 -14.80212 -14.32008 -14.03242 -13.86740 -13.84756 -13.57359 -13.53432 -13.30411 -12.78612 -12.70342 -12.51467 -12.44473 -12.15705 -12.06658 -11.88933 -11.76690 -11.64915 -11.64522 -11.44101 -11.38221 -11.29292 -10.97792 -10.82916 -10.73866 -10.37099 -10.09317 -10.03028 -9.83366 -9.79901 -9.52595 -9.09222 -8.61692 -7.06548 -6.02694 -3.39556 1.22234 1.80902 2.31008 2.45492 3.14440 3.22680 3.42488 3.43956 3.73135 4.05095 4.27297 4.44391 4.47496 4.65232 4.68866 4.81007 4.81228 4.82436 4.94630 4.99474 5.03277 5.29757 5.32238 5.36789 5.44995 5.53514 5.55136 5.57058 5.57258 5.67391 5.75069 5.81757 5.87359 5.89888 5.92051 5.96698 6.04022 6.07729 6.16465 6.21735 6.36851 6.49631 6.54272 6.60297 6.73317 7.47390 7.86722 8.12734 8.24526 8.67729 8.85247 9.63469 9.98980 11.13013 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.003588 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.311935 B = 7802.876884 C = 9002.826590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.009 4.009 3 C -0.143 4.143 4 C 0.196 3.804 5 N -0.303 5.303 6 N -0.078 5.078 7 N -0.076 5.076 8 N -0.289 5.289 9 C 0.090 3.910 10 C 0.504 3.496 11 O -0.529 6.529 12 N -0.689 5.689 13 C 0.136 3.864 14 H 0.084 0.916 15 C 0.136 3.864 16 N -0.601 5.601 17 C -0.259 4.259 18 H 0.084 0.916 19 C 0.025 3.975 20 N -0.906 5.906 21 Si 0.883 3.117 22 H -0.290 1.290 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.122 3.878 26 C -0.130 4.130 27 C -0.095 4.095 28 H 0.082 0.918 29 C -0.144 4.144 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.147 0.853 38 H 0.135 0.865 39 H 0.403 0.597 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.263 0.737 43 H 0.074 0.926 44 H 0.026 0.974 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 16.621 -11.472 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.082 4.082 5 N -0.152 5.152 6 N -0.071 5.071 7 N -0.061 5.061 8 N -0.089 5.089 9 C -0.036 4.036 10 C 0.286 3.714 11 O -0.405 6.405 12 N -0.341 5.341 13 C 0.031 3.969 14 H 0.102 0.898 15 C 0.009 3.991 16 N -0.325 5.325 17 C -0.388 4.388 18 H 0.102 0.898 19 C -0.174 4.174 20 N -0.548 5.548 21 Si 0.713 3.287 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.196 1.196 25 C -0.004 4.004 26 C -0.169 4.169 27 C -0.114 4.114 28 H 0.100 0.900 29 C -0.201 4.201 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.165 0.835 38 H 0.152 0.848 39 H 0.239 0.761 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.409 16.239 -9.504 20.609 hybrid contribution 0.569 -1.155 -1.884 2.282 sum -7.839 15.084 -11.388 20.462 Atomic orbital electron populations 1.21818 0.91870 1.03251 1.03200 1.19747 0.97765 0.95892 0.89663 1.21850 1.01252 0.93512 1.03556 1.26008 0.95178 0.89131 0.97918 1.74907 1.19871 1.22071 0.98331 1.78607 1.07001 0.99082 1.22445 1.78994 1.19722 1.20242 0.87177 1.47857 1.34343 1.19788 1.06940 1.22035 1.00012 0.95574 0.86014 1.20066 0.87089 0.82890 0.81335 1.90789 1.26452 1.71375 1.51921 1.45733 1.24196 1.32922 1.31254 1.21599 0.92226 0.88677 0.94423 0.89789 1.21330 0.87646 0.91886 0.98278 1.44310 1.11025 1.75663 1.01482 1.18868 1.05681 1.15479 0.98727 0.89835 1.25266 0.96423 0.97996 0.97688 1.69834 1.06448 1.35438 1.43126 0.86971 0.78225 0.82963 0.80495 1.21744 1.23208 1.19646 1.21291 1.00060 0.94199 0.84810 1.22019 0.95193 1.00087 0.99643 1.21335 0.98516 0.98012 0.93519 0.90018 1.21839 1.01163 0.97636 0.99495 0.91107 0.91079 0.91842 0.89254 0.92367 0.90918 0.90959 0.83545 0.84768 0.76087 0.94941 0.91279 0.92725 0.90773 0.95659 0.92173 0.92089 0.92915 0.92709 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.18 37.15 0.34 -0.87 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -0.95 9.18 37.16 0.34 -0.61 16 4 C 0.20 2.54 6.64 -155.43 -1.03 1.51 16 5 N -0.30 -4.81 12.36 32.70 0.40 -4.41 16 6 N -0.08 -1.41 13.43 60.35 0.81 -0.60 16 7 N -0.08 -1.34 13.29 60.35 0.80 -0.53 16 8 N -0.29 -4.04 2.83 -59.44 -0.17 -4.21 16 9 C 0.09 0.95 6.57 -5.20 -0.03 0.91 16 10 C 0.50 6.93 7.86 -10.99 -0.09 6.84 16 11 O -0.53 -9.51 16.09 5.55 0.09 -9.42 16 12 N -0.69 -8.80 4.25 -53.69 -0.23 -9.03 16 13 C 0.14 1.93 2.24 -67.81 -0.15 1.78 16 14 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 15 C 0.14 2.52 6.12 -3.71 -0.02 2.50 16 16 N -0.60 -12.88 2.70 -172.58 -0.47 -13.34 16 17 C -0.26 -6.82 10.03 -15.06 -0.15 -6.97 16 18 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 19 C 0.03 0.70 5.23 -17.43 -0.09 0.61 16 20 N -0.91 -26.83 13.97 55.49 0.78 -26.05 16 21 Si 0.88 21.43 24.35 -169.99 -4.14 17.29 16 22 H -0.29 -6.68 6.62 56.52 0.37 -6.30 16 23 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 24 H -0.27 -6.51 6.64 56.52 0.38 -6.13 16 25 C 0.12 2.32 4.18 -3.93 -0.02 2.31 16 26 C -0.13 -1.79 5.18 -26.84 -0.14 -1.93 16 27 C -0.09 -1.14 2.48 -90.58 -0.22 -1.36 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 C -0.14 -1.31 9.05 37.16 0.34 -0.97 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.56 6.84 -51.93 -0.36 0.21 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.15 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.13 0.73 7.12 -51.93 -0.37 0.36 16 39 H 0.40 4.48 6.64 -40.82 -0.27 4.21 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 1.59 4.49 -51.93 -0.23 1.35 16 44 H 0.03 0.49 7.08 -51.93 -0.37 0.12 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.81 6.41 -51.93 -0.33 0.47 16 47 H 0.05 0.43 7.54 -51.93 -0.39 0.04 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -35.14 386.54 -5.34 -40.47 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.81 Total: 0.65 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.23 Total: 3.36 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 1.93 Total: -58.17 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.29 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.14 -5.34 -40.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968405974.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.216 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds