Wall clock time and date at job start Tue Mar 31 2020 21:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47203 * 2 1 4 4 C 1.50700 * 109.47266 * 120.00075 * 2 1 3 5 5 N 1.31079 * 126.65808 * 300.16777 * 4 2 1 6 6 N 1.28843 * 107.98775 * 180.23988 * 5 4 2 7 7 N 1.28732 * 109.39746 * 359.75911 * 6 5 4 8 8 N 1.29022 * 108.81151 * 359.97438 * 7 6 5 9 9 C 1.46503 * 126.43855 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47244 * 90.02499 * 9 8 7 11 11 O 1.21285 * 120.00284 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00213 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00617 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.49589 * 35.06380 * 13 12 10 15 15 C 1.53194 * 109.49991 * 275.00470 * 13 12 10 16 16 N 1.46923 * 108.77508 * 294.64969 * 15 13 12 17 17 C 1.36934 * 120.63543 * 126.37021 * 16 15 13 18 18 H 1.08003 * 119.99164 * 332.79102 * 17 16 15 19 19 C 1.38806 * 120.00254 * 153.06831 * 17 16 15 20 20 N 1.31620 * 119.99756 * 159.13051 * 19 17 16 21 21 Si 1.86797 * 120.00014 * 339.13222 * 19 17 16 22 22 H 1.48500 * 109.47157 * 93.09435 * 21 19 17 23 23 H 1.48499 * 109.47219 * 213.09568 * 21 19 17 24 24 H 1.48498 * 109.46981 * 333.09353 * 21 19 17 25 25 C 1.46930 * 118.73533 * 306.64194 * 16 15 13 26 26 C 1.52756 * 109.00914 * 53.31004 * 25 16 15 27 27 C 1.53034 * 109.52794 * 155.14740 * 13 12 10 28 28 H 1.09002 * 109.45957 * 178.61284 * 27 13 12 29 29 C 1.53006 * 109.45830 * 298.58524 * 27 13 12 30 30 H 1.09006 * 109.46878 * 300.00080 * 1 2 3 31 31 H 1.09004 * 109.46806 * 59.99797 * 1 2 3 32 32 H 1.08991 * 109.47244 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47116 * 239.99900 * 2 1 3 34 34 H 1.09006 * 109.46682 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47047 * 299.99959 * 3 2 1 36 36 H 1.08997 * 109.47166 * 59.99931 * 3 2 1 37 37 H 1.09002 * 109.47086 * 330.02222 * 9 8 7 38 38 H 1.08998 * 109.46601 * 210.02685 * 9 8 7 39 39 H 0.97005 * 119.99661 * 0.02562 * 12 10 9 40 40 H 1.09003 * 109.58662 * 174.85949 * 15 13 12 41 41 H 1.09002 * 109.70356 * 54.50227 * 15 13 12 42 42 H 0.97000 * 119.99511 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.58564 * 173.14640 * 25 16 15 44 44 H 1.08998 * 109.58600 * 293.56952 * 25 16 15 45 45 H 1.08999 * 109.56743 * 185.55259 * 26 25 16 46 46 H 1.08996 * 109.38799 * 65.51495 * 26 25 16 47 47 H 1.08995 * 109.47274 * 60.00140 * 29 27 13 48 48 H 1.09006 * 109.47002 * 180.02562 * 29 27 13 49 49 H 1.08999 * 109.47220 * 299.99850 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7950 -0.3801 2.4765 6 7 2.4015 -1.2268 3.2350 7 7 3.0153 -2.0915 2.5052 8 7 2.8088 -1.8093 1.2633 9 6 3.3279 -2.5428 0.1062 10 6 2.3494 -3.6195 -0.2863 11 8 1.3195 -3.7601 0.3386 12 7 2.6182 -4.4257 -1.3323 13 6 1.6672 -5.4728 -1.7136 14 1 0.6500 -5.1202 -1.5427 15 6 1.9220 -6.7265 -0.8709 16 7 3.2474 -7.2626 -1.2095 17 6 4.1754 -7.4988 -0.2308 18 1 4.1525 -6.9259 0.6846 19 6 5.1491 -8.4703 -0.4174 20 7 6.2583 -8.4348 0.2902 21 14 4.8852 -9.8281 -1.6728 22 1 5.4842 -9.4256 -2.9706 23 1 5.5319 -11.0766 -1.1951 24 1 3.4295 -10.0616 -1.8507 25 6 3.5602 -7.5347 -2.6191 26 6 3.2851 -6.2772 -3.4416 27 6 1.8478 -5.8132 -3.1947 28 1 1.1567 -6.6095 -3.4711 29 6 1.5603 -4.5718 -4.0417 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 4.2845 -2.9975 0.3636 38 1 3.4653 -1.8550 -0.7281 39 1 3.4418 -4.3130 -1.8324 40 1 1.1590 -7.4740 -1.0881 41 1 1.8913 -6.4700 0.1880 42 1 6.9389 -9.1135 0.1595 43 1 4.6109 -7.8090 -2.7138 44 1 2.9336 -8.3495 -2.9817 45 1 3.4195 -6.4971 -4.5007 46 1 3.9778 -5.4906 -3.1427 47 1 2.2509 -3.7752 -3.7651 48 1 1.6884 -4.8142 -5.0967 49 1 0.5362 -4.2419 -3.8669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968405974.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:03 Heat of formation + Delta-G solvation = 73.538890 kcal Electronic energy + Delta-G solvation = -30936.218614 eV Core-core repulsion = 26935.653700 eV Total energy + Delta-G solvation = -4000.564914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.29659 -41.37340 -39.48335 -37.15399 -36.45862 -36.09394 -34.37616 -33.38223 -32.58340 -31.59599 -29.87435 -28.98370 -28.09052 -25.70251 -25.46111 -24.75517 -24.09225 -22.98182 -22.25826 -21.50384 -20.45951 -19.19089 -18.82238 -18.57316 -17.47262 -17.19346 -16.89370 -16.78841 -16.33367 -15.61062 -15.55209 -15.34357 -15.18703 -15.12768 -14.87556 -14.39638 -14.23793 -14.17878 -13.84916 -13.75185 -13.62235 -13.23355 -13.08391 -13.07211 -12.91613 -12.70188 -12.62039 -12.48798 -12.34465 -12.28388 -12.26534 -12.20600 -11.88500 -11.84203 -11.56222 -11.39615 -11.19922 -11.15167 -10.92767 -10.73795 -10.15186 -8.88813 -8.16354 -5.48151 0.11427 0.83846 1.13128 1.27932 1.37006 1.42932 1.50385 2.11404 2.40310 2.89164 3.07911 3.16008 3.29901 3.45043 3.59731 3.78678 3.88924 3.91687 4.03115 4.03951 4.07337 4.19404 4.32943 4.38467 4.54016 4.55776 4.65184 4.68277 4.72363 4.79903 4.85931 4.88475 4.92303 4.94927 4.97442 5.00442 5.05688 5.15622 5.16866 5.24601 5.30972 5.37267 5.40410 5.48578 5.56459 5.85917 6.11110 6.41871 6.91949 7.07475 7.48650 7.62340 8.00667 9.03640 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.003588 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.311935 B = 7802.876884 C = 9002.826590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.010 4.010 3 C -0.139 4.139 4 C 0.209 3.791 5 N -0.328 5.328 6 N -0.108 5.108 7 N -0.113 5.113 8 N -0.289 5.289 9 C 0.086 3.914 10 C 0.503 3.497 11 O -0.576 6.576 12 N -0.680 5.680 13 C 0.146 3.854 14 H 0.087 0.913 15 C 0.133 3.867 16 N -0.610 5.610 17 C -0.240 4.240 18 H 0.038 0.962 19 C -0.032 4.032 20 N -0.957 5.957 21 Si 0.949 3.051 22 H -0.265 1.265 23 H -0.320 1.320 24 H -0.266 1.266 25 C 0.114 3.886 26 C -0.121 4.121 27 C -0.086 4.086 28 H 0.086 0.914 29 C -0.136 4.136 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.038 0.962 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.151 0.849 38 H 0.197 0.803 39 H 0.414 0.586 40 H 0.038 0.962 41 H 0.029 0.971 42 H 0.261 0.739 43 H 0.051 0.949 44 H 0.029 0.971 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.744 18.353 -16.398 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 C -0.197 4.197 4 C -0.069 4.069 5 N -0.177 5.177 6 N -0.102 5.102 7 N -0.099 5.099 8 N -0.089 5.089 9 C -0.038 4.038 10 C 0.287 3.713 11 O -0.456 6.456 12 N -0.332 5.332 13 C 0.040 3.960 14 H 0.105 0.895 15 C 0.007 3.993 16 N -0.335 5.335 17 C -0.370 4.370 18 H 0.056 0.944 19 C -0.227 4.227 20 N -0.603 5.603 21 Si 0.778 3.222 22 H -0.191 1.191 23 H -0.249 1.249 24 H -0.191 1.191 25 C -0.010 4.010 26 C -0.160 4.160 27 C -0.105 4.105 28 H 0.104 0.896 29 C -0.193 4.193 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.058 0.942 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.169 0.831 38 H 0.214 0.786 39 H 0.252 0.748 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.109 0.891 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.216 17.991 -14.498 24.876 hybrid contribution 0.727 -1.673 -0.312 1.850 sum -8.489 16.319 -14.810 23.616 Atomic orbital electron populations 1.21813 0.91873 1.01930 1.04217 1.20164 0.97631 0.96928 0.88443 1.21856 1.01535 0.92024 1.04294 1.26930 0.93267 0.88219 0.98502 1.74819 1.20646 1.22474 0.99763 1.78554 1.07996 0.99926 1.23707 1.78902 1.20958 1.21040 0.88992 1.48065 1.34270 1.20073 1.06542 1.22442 0.98562 0.96051 0.86699 1.20572 0.86844 0.83246 0.80629 1.90780 1.28733 1.72745 1.53309 1.45653 1.24374 1.32088 1.31067 1.21395 0.92701 0.86523 0.95345 0.89458 1.21404 0.86438 0.94294 0.97158 1.44329 1.11180 1.76003 1.01941 1.18659 1.05936 1.14011 0.98371 0.94377 1.25859 0.96211 1.00172 1.00428 1.69972 1.07717 1.36486 1.46132 0.85902 0.78125 0.79006 0.79144 1.19123 1.24917 1.19079 1.21404 0.98691 0.97250 0.83698 1.21930 0.96483 0.97348 1.00240 1.21296 0.97440 0.99902 0.91847 0.89616 1.21769 1.01906 0.96022 0.99614 0.92597 0.87604 0.94241 0.85911 0.91915 0.87771 0.92645 0.83106 0.78572 0.74768 0.94453 0.95202 0.93054 0.93045 0.95332 0.89082 0.91302 0.91628 0.91033 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.18 71.98 0.66 -1.39 16 2 C -0.01 -0.14 3.26 -11.54 -0.04 -0.18 16 3 C -0.14 -1.37 9.18 71.98 0.66 -0.71 16 4 C 0.21 5.22 6.64 138.13 0.92 6.14 16 5 N -0.33 -10.66 12.36 -50.45 -0.62 -11.29 16 6 N -0.11 -4.11 13.43 37.01 0.50 -3.61 16 7 N -0.11 -4.13 13.29 37.02 0.49 -3.64 16 8 N -0.29 -7.94 2.83 -341.98 -0.97 -8.91 16 9 C 0.09 1.65 6.57 85.63 0.56 2.21 16 10 C 0.50 13.22 7.86 87.65 0.69 13.91 16 11 O -0.58 -20.87 16.09 -3.04 -0.05 -20.92 16 12 N -0.68 -15.87 4.25 -442.18 -1.88 -17.76 16 13 C 0.15 3.84 2.24 45.07 0.10 3.94 16 14 H 0.09 2.31 7.58 -2.38 -0.02 2.30 16 15 C 0.13 4.98 6.12 86.36 0.53 5.51 16 16 N -0.61 -26.00 2.70 -699.93 -1.89 -27.89 16 17 C -0.24 -13.05 10.03 84.03 0.84 -12.21 16 18 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 19 C -0.03 -1.80 5.23 84.86 0.44 -1.35 16 20 N -0.96 -58.80 13.97 21.65 0.30 -58.49 16 21 Si 0.95 44.75 24.35 68.60 1.67 46.42 16 22 H -0.27 -11.34 6.62 99.48 0.66 -10.68 16 23 H -0.32 -15.81 7.11 99.48 0.71 -15.10 16 24 H -0.27 -12.13 6.64 99.48 0.66 -11.47 16 25 C 0.11 4.07 4.18 86.22 0.36 4.43 16 26 C -0.12 -2.82 5.18 30.53 0.16 -2.66 16 27 C -0.09 -1.70 2.48 -10.77 -0.03 -1.73 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 C -0.14 -1.71 9.05 71.98 0.65 -1.05 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.12 0.89 6.84 -2.39 -0.02 0.88 16 34 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.15 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.20 1.15 7.12 -2.39 -0.02 1.13 16 39 H 0.41 7.83 6.64 -92.70 -0.62 7.21 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 42 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.05 2.08 4.49 -2.39 -0.01 2.07 16 44 H 0.03 1.02 7.08 -2.39 -0.02 1.00 16 45 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.07 1.52 6.41 -2.39 -0.02 1.50 16 47 H 0.06 0.68 7.54 -2.39 -0.02 0.66 16 48 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -84.79 386.54 4.32 -80.48 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.25 Total: 10.76 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 6.51 Total: 14.85 kcal Atomic # 7 Polarization: -127.52 SS G_CDS: -4.07 Total: -131.59 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.05 Total: -20.92 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.42 kcal Total: -84.79 4.32 -80.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968405974.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.015 kcal (2) G-P(sol) polarization free energy of solvation -84.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds