Wall clock time and date at job start Tue Mar 31 2020 21:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47046 * 2 1 4 4 C 1.50698 * 109.46901 * 119.99447 * 2 1 3 5 5 N 1.31073 * 126.66444 * 300.17831 * 4 2 1 6 6 N 1.28849 * 107.99139 * 180.24343 * 5 4 2 7 7 N 1.28738 * 109.39203 * 359.75098 * 6 5 4 8 8 N 1.29011 * 108.81487 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.44060 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46818 * 90.02465 * 9 8 7 11 11 O 1.21276 * 119.99894 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99726 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00052 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.49444 * 324.94389 * 13 12 10 15 15 C 1.53195 * 109.49512 * 85.00310 * 13 12 10 16 16 N 1.46930 * 108.77343 * 174.58701 * 15 13 12 17 17 C 1.36934 * 120.62888 * 126.41484 * 16 15 13 18 18 H 1.08007 * 120.00219 * 331.82233 * 17 16 15 19 19 C 1.38816 * 120.00026 * 151.82453 * 17 16 15 20 20 N 1.31612 * 119.99500 * 343.07801 * 19 17 16 21 21 Si 1.86794 * 120.00031 * 163.07977 * 19 17 16 22 22 H 1.48504 * 109.47187 * 59.99600 * 21 19 17 23 23 H 1.48497 * 109.47306 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47353 * 299.99978 * 21 19 17 25 25 C 1.46921 * 118.74109 * 306.39477 * 16 15 13 26 26 C 1.53199 * 108.77747 * 53.60549 * 25 16 15 27 27 C 1.53035 * 109.50026 * 204.84389 * 13 12 10 28 28 H 1.08998 * 109.46056 * 298.70601 * 27 13 12 29 29 C 1.53000 * 109.45937 * 58.66207 * 27 13 12 30 30 H 1.09007 * 109.46909 * 60.00575 * 1 2 3 31 31 H 1.09003 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47521 * 300.00152 * 1 2 3 33 33 H 1.08991 * 109.47521 * 239.99848 * 2 1 3 34 34 H 1.08997 * 109.47216 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46825 * 299.99951 * 3 2 1 36 36 H 1.09000 * 109.46843 * 59.99620 * 3 2 1 37 37 H 1.08996 * 109.47124 * 330.02823 * 9 8 7 38 38 H 1.08998 * 109.47015 * 210.02463 * 9 8 7 39 39 H 0.97004 * 120.00140 * 0.02562 * 12 10 9 40 40 H 1.08994 * 109.58693 * 54.80218 * 15 13 12 41 41 H 1.08996 * 109.70414 * 294.44802 * 15 13 12 42 42 H 0.97002 * 119.99590 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.58734 * 293.82510 * 25 16 15 44 44 H 1.08997 * 109.70624 * 173.46625 * 25 16 15 45 45 H 1.08999 * 109.49536 * 65.31564 * 26 25 16 46 46 H 1.08996 * 109.49740 * 185.41361 * 26 25 16 47 47 H 1.09005 * 109.47236 * 180.02562 * 29 27 13 48 48 H 1.09000 * 109.47181 * 300.06608 * 29 27 13 49 49 H 1.08996 * 109.47135 * 60.07009 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7948 -0.3801 2.4766 6 7 2.4014 -1.2267 3.2352 7 7 3.0153 -2.0914 2.5053 8 7 2.8088 -1.8093 1.2634 9 6 3.3279 -2.5428 0.1064 10 6 2.3493 -3.6196 -0.2860 11 8 1.3196 -3.7602 0.3390 12 7 2.6182 -4.4258 -1.3321 13 6 1.6667 -5.4723 -1.7139 14 1 1.1929 -5.8771 -0.8195 15 6 0.5965 -4.8787 -2.6354 16 7 -0.2717 -5.9639 -3.1123 17 6 -1.6304 -5.8885 -2.9599 18 1 -2.0515 -5.3233 -2.1416 19 6 -2.4666 -6.5387 -3.8572 20 7 -1.9991 -6.9396 -5.0203 21 14 -4.2552 -6.8443 -3.4138 22 1 -4.9330 -5.5461 -3.1676 23 1 -4.9293 -7.5496 -4.5333 24 1 -4.3256 -7.6796 -2.1880 25 6 0.3457 -7.1314 -3.7562 26 6 1.4188 -7.6997 -2.8221 27 6 2.4062 -6.5907 -2.4517 28 1 2.8591 -6.1899 -3.3585 29 6 3.4990 -7.1627 -1.5464 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 4.2845 -2.9974 0.3638 38 1 3.4653 -1.8550 -0.7280 39 1 3.4417 -4.3132 -1.8322 40 1 1.0750 -4.3931 -3.4858 41 1 0.0015 -4.1495 -2.0856 42 1 -2.5835 -7.3936 -5.6474 43 1 0.8039 -6.8295 -4.6980 44 1 -0.4130 -7.8906 -3.9458 45 1 0.9473 -8.0840 -1.9176 46 1 1.9503 -8.5064 -3.3269 47 1 4.0263 -7.9590 -2.0719 48 1 4.2025 -6.3730 -1.2825 49 1 3.0465 -7.5641 -0.6398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968405975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:08 Heat of formation + Delta-G solvation = 92.219707 kcal Electronic energy + Delta-G solvation = -30440.464525 eV Core-core repulsion = 26440.709672 eV Total energy + Delta-G solvation = -3999.754853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.28008 -40.14751 -37.97230 -36.36599 -35.48168 -34.69295 -33.25505 -31.61032 -31.20859 -30.01723 -28.50656 -27.46071 -27.28874 -24.56575 -24.25240 -23.62738 -22.41370 -21.23439 -20.97004 -20.53004 -19.60863 -17.97431 -17.88758 -16.89736 -16.36696 -16.09709 -15.57399 -15.46609 -14.83614 -14.72575 -14.16008 -14.00178 -13.73000 -13.57068 -13.51539 -13.45923 -13.29372 -12.90158 -12.58159 -12.45594 -12.29269 -12.14281 -11.91453 -11.78719 -11.62053 -11.59761 -11.44267 -11.42225 -11.14459 -11.06000 -10.84769 -10.79232 -10.38171 -10.27304 -10.22828 -10.04420 -9.97563 -9.79891 -9.64856 -9.06269 -8.49232 -6.76371 -5.85811 -3.28920 1.07716 1.66351 2.19662 2.29757 2.94869 3.36809 3.41802 3.45053 3.67852 3.91657 4.20473 4.27608 4.40962 4.48337 4.68493 4.79901 4.94254 4.95915 5.15004 5.26473 5.29474 5.36153 5.36381 5.44942 5.48817 5.58369 5.61723 5.64908 5.74657 5.80692 5.89385 5.89832 5.96518 6.01627 6.08119 6.09245 6.17316 6.35493 6.48182 6.50502 6.58770 6.69197 6.80914 7.25177 7.34064 7.56174 7.75909 7.98544 8.38134 8.54202 9.14469 9.76194 10.31156 11.22867 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003387 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.162369 B = 8264.403362 C = 9654.752306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.205 3.795 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.087 5.087 8 N -0.294 5.294 9 C 0.091 3.909 10 C 0.496 3.504 11 O -0.512 6.512 12 N -0.709 5.709 13 C 0.132 3.868 14 H 0.088 0.912 15 C 0.143 3.857 16 N -0.586 5.586 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.167 3.833 26 C -0.134 4.134 27 C -0.090 4.090 28 H 0.069 0.931 29 C -0.145 4.145 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.398 0.602 40 H 0.018 0.982 41 H 0.057 0.943 42 H 0.255 0.745 43 H 0.019 0.981 44 H 0.090 0.910 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.046 0.954 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.649 10.156 3.425 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.073 4.073 5 N -0.149 5.149 6 N -0.069 5.069 7 N -0.073 5.073 8 N -0.094 5.094 9 C -0.035 4.035 10 C 0.278 3.722 11 O -0.387 6.387 12 N -0.361 5.361 13 C 0.027 3.973 14 H 0.106 0.894 15 C 0.015 3.985 16 N -0.308 5.308 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.193 4.193 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.042 3.958 26 C -0.174 4.174 27 C -0.109 4.109 28 H 0.087 0.913 29 C -0.203 4.203 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.232 0.768 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.108 0.892 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.883 9.786 5.183 18.551 hybrid contribution -0.382 -0.369 -1.100 1.222 sum 14.501 9.416 4.083 17.765 Atomic orbital electron populations 1.21840 0.91474 1.03680 1.03364 1.19811 0.98123 0.95875 0.89477 1.21850 1.00999 0.93519 1.03740 1.26106 0.94476 0.88729 0.98003 1.74945 1.19655 1.21979 0.98361 1.78590 1.06810 0.99014 1.22448 1.78859 1.20429 1.20734 0.87244 1.47835 1.34752 1.20004 1.06810 1.22030 0.99316 0.95838 0.86357 1.20190 0.87399 0.83061 0.81596 1.90864 1.25821 1.69665 1.52315 1.46012 1.24264 1.34567 1.31233 1.21911 0.89445 0.86439 0.99463 0.89398 1.21161 0.91526 0.91493 0.94312 1.43961 1.02273 1.15705 1.68907 1.19151 0.81053 1.31134 1.07100 0.91691 1.25015 0.97958 1.01731 0.94569 1.70015 1.35557 1.42948 1.06176 0.86364 0.84688 0.78273 0.77452 1.20788 1.21553 1.20916 1.20846 0.93353 0.90431 0.91195 1.22263 0.97485 0.96250 1.01405 1.21309 0.95860 0.95964 0.97797 0.91297 1.21868 0.98200 1.00304 0.99881 0.90754 0.91553 0.91154 0.89072 0.92516 0.90708 0.90982 0.84184 0.84430 0.76819 0.96423 0.92459 0.93525 0.96248 0.89224 0.92381 0.92554 0.92786 0.93455 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.18 37.16 0.34 -1.13 16 2 C -0.01 -0.10 3.26 -91.77 -0.30 -0.40 16 3 C -0.14 -0.98 9.18 37.16 0.34 -0.64 16 4 C 0.20 2.54 6.64 -155.42 -1.03 1.51 16 5 N -0.30 -4.57 12.36 32.70 0.40 -4.17 16 6 N -0.07 -1.24 13.43 60.35 0.81 -0.43 16 7 N -0.09 -1.32 13.29 60.35 0.80 -0.52 16 8 N -0.29 -3.58 2.83 -59.44 -0.17 -3.75 16 9 C 0.09 0.71 6.57 -5.19 -0.03 0.68 16 10 C 0.50 6.04 7.86 -10.98 -0.09 5.96 16 11 O -0.51 -9.24 16.09 5.56 0.09 -9.15 16 12 N -0.71 -7.75 4.37 -53.69 -0.23 -7.99 16 13 C 0.13 2.07 2.06 -67.81 -0.14 1.93 16 14 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 15 C 0.14 2.82 6.09 -3.71 -0.02 2.80 16 16 N -0.59 -14.06 2.99 -172.32 -0.52 -14.58 16 17 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 18 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 19 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 20 N -0.90 -25.42 11.19 55.49 0.62 -24.80 16 21 Si 0.90 21.62 29.59 -169.99 -5.03 16.60 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.17 3.72 5.30 -3.71 -0.02 3.70 16 26 C -0.13 -2.31 5.36 -26.61 -0.14 -2.46 16 27 C -0.09 -1.27 2.27 -90.58 -0.21 -1.47 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 C -0.15 -1.64 9.02 37.16 0.34 -1.30 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.63 6.84 -51.93 -0.36 0.28 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.14 0.49 7.12 -51.93 -0.37 0.12 16 39 H 0.40 2.76 8.30 -40.82 -0.34 2.42 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 2.28 6.07 -51.93 -0.31 1.96 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.43 7.35 -51.93 -0.38 0.05 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -35.33 396.14 -6.48 -41.81 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.03 Total: -1.19 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.20 Total: 2.19 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 1.72 Total: -56.22 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.33 -6.48 -41.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968405975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.033 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds