Wall clock time and date at job start Tue Mar 31 2020 21:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47046 * 2 1 4 4 C 1.50698 * 109.46901 * 119.99447 * 2 1 3 5 5 N 1.31073 * 126.66444 * 300.17831 * 4 2 1 6 6 N 1.28849 * 107.99139 * 180.24343 * 5 4 2 7 7 N 1.28738 * 109.39203 * 359.75098 * 6 5 4 8 8 N 1.29011 * 108.81487 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.44060 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46818 * 90.02465 * 9 8 7 11 11 O 1.21276 * 119.99894 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99726 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00052 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.49444 * 324.94389 * 13 12 10 15 15 C 1.53195 * 109.49512 * 85.00310 * 13 12 10 16 16 N 1.46930 * 108.77343 * 174.58701 * 15 13 12 17 17 C 1.36934 * 120.62888 * 126.41484 * 16 15 13 18 18 H 1.08007 * 120.00219 * 331.82233 * 17 16 15 19 19 C 1.38816 * 120.00026 * 151.82453 * 17 16 15 20 20 N 1.31612 * 119.99500 * 343.07801 * 19 17 16 21 21 Si 1.86794 * 120.00031 * 163.07977 * 19 17 16 22 22 H 1.48504 * 109.47187 * 59.99600 * 21 19 17 23 23 H 1.48497 * 109.47306 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47353 * 299.99978 * 21 19 17 25 25 C 1.46921 * 118.74109 * 306.39477 * 16 15 13 26 26 C 1.53199 * 108.77747 * 53.60549 * 25 16 15 27 27 C 1.53035 * 109.50026 * 204.84389 * 13 12 10 28 28 H 1.08998 * 109.46056 * 298.70601 * 27 13 12 29 29 C 1.53000 * 109.45937 * 58.66207 * 27 13 12 30 30 H 1.09007 * 109.46909 * 60.00575 * 1 2 3 31 31 H 1.09003 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47521 * 300.00152 * 1 2 3 33 33 H 1.08991 * 109.47521 * 239.99848 * 2 1 3 34 34 H 1.08997 * 109.47216 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46825 * 299.99951 * 3 2 1 36 36 H 1.09000 * 109.46843 * 59.99620 * 3 2 1 37 37 H 1.08996 * 109.47124 * 330.02823 * 9 8 7 38 38 H 1.08998 * 109.47015 * 210.02463 * 9 8 7 39 39 H 0.97004 * 120.00140 * 0.02562 * 12 10 9 40 40 H 1.08994 * 109.58693 * 54.80218 * 15 13 12 41 41 H 1.08996 * 109.70414 * 294.44802 * 15 13 12 42 42 H 0.97002 * 119.99590 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.58734 * 293.82510 * 25 16 15 44 44 H 1.08997 * 109.70624 * 173.46625 * 25 16 15 45 45 H 1.08999 * 109.49536 * 65.31564 * 26 25 16 46 46 H 1.08996 * 109.49740 * 185.41361 * 26 25 16 47 47 H 1.09005 * 109.47236 * 180.02562 * 29 27 13 48 48 H 1.09000 * 109.47181 * 300.06608 * 29 27 13 49 49 H 1.08996 * 109.47135 * 60.07009 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7948 -0.3801 2.4766 6 7 2.4014 -1.2267 3.2352 7 7 3.0153 -2.0914 2.5053 8 7 2.8088 -1.8093 1.2634 9 6 3.3279 -2.5428 0.1064 10 6 2.3493 -3.6196 -0.2860 11 8 1.3196 -3.7602 0.3390 12 7 2.6182 -4.4258 -1.3321 13 6 1.6667 -5.4723 -1.7139 14 1 1.1929 -5.8771 -0.8195 15 6 0.5965 -4.8787 -2.6354 16 7 -0.2717 -5.9639 -3.1123 17 6 -1.6304 -5.8885 -2.9599 18 1 -2.0515 -5.3233 -2.1416 19 6 -2.4666 -6.5387 -3.8572 20 7 -1.9991 -6.9396 -5.0203 21 14 -4.2552 -6.8443 -3.4138 22 1 -4.9330 -5.5461 -3.1676 23 1 -4.9293 -7.5496 -4.5333 24 1 -4.3256 -7.6796 -2.1880 25 6 0.3457 -7.1314 -3.7562 26 6 1.4188 -7.6997 -2.8221 27 6 2.4062 -6.5907 -2.4517 28 1 2.8591 -6.1899 -3.3585 29 6 3.4990 -7.1627 -1.5464 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 4.2845 -2.9974 0.3638 38 1 3.4653 -1.8550 -0.7280 39 1 3.4417 -4.3132 -1.8322 40 1 1.0750 -4.3931 -3.4858 41 1 0.0015 -4.1495 -2.0856 42 1 -2.5835 -7.3936 -5.6474 43 1 0.8039 -6.8295 -4.6980 44 1 -0.4130 -7.8906 -3.9458 45 1 0.9473 -8.0840 -1.9176 46 1 1.9503 -8.5064 -3.3269 47 1 4.0263 -7.9590 -2.0719 48 1 4.2025 -6.3730 -1.2825 49 1 3.0465 -7.5641 -0.6398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968405975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:07 Heat of formation + Delta-G solvation = 66.773502 kcal Electronic energy + Delta-G solvation = -30441.567955 eV Core-core repulsion = 26440.709672 eV Total energy + Delta-G solvation = -4000.858283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.29170 -41.27133 -39.35091 -37.17456 -36.49740 -36.19727 -34.60565 -33.04646 -32.57520 -31.24178 -29.68473 -28.77333 -28.13041 -25.93941 -25.49255 -24.80459 -23.69571 -22.71548 -21.96023 -21.54421 -20.99695 -18.98549 -18.85754 -18.67647 -17.40308 -17.20177 -16.76811 -16.60168 -16.34580 -15.63477 -15.58906 -15.33453 -15.19881 -14.99340 -14.58089 -14.40346 -14.21227 -14.16926 -13.77325 -13.60281 -13.23495 -13.18483 -13.14618 -13.11331 -12.77906 -12.70450 -12.65717 -12.49012 -12.34431 -12.31915 -12.28837 -12.04703 -11.98026 -11.90693 -11.67179 -11.48269 -11.28572 -11.16278 -10.90282 -10.62036 -10.21344 -8.70529 -7.93243 -5.38181 0.08604 0.85300 1.13204 1.35788 1.41984 1.43880 1.50952 1.98773 2.47368 2.87201 3.15418 3.21484 3.40008 3.61332 3.73191 3.77640 3.90418 4.00093 4.00343 4.04430 4.10417 4.19693 4.37046 4.43692 4.51382 4.64470 4.66659 4.75091 4.75264 4.80621 4.90147 4.91779 4.94751 4.95284 5.03307 5.08476 5.13580 5.16345 5.21785 5.25527 5.35380 5.40936 5.46312 5.53143 5.61353 5.76801 6.34373 6.40986 7.09945 7.12544 7.48293 7.81575 8.29738 9.11950 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003387 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.162369 B = 8264.403362 C = 9654.752306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.137 4.137 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.109 5.109 7 N -0.101 5.101 8 N -0.291 5.291 9 C 0.090 3.910 10 C 0.496 3.504 11 O -0.578 6.578 12 N -0.688 5.688 13 C 0.151 3.849 14 H 0.049 0.951 15 C 0.145 3.855 16 N -0.607 5.607 17 C -0.269 4.269 18 H 0.049 0.951 19 C -0.037 4.037 20 N -0.925 5.925 21 Si 0.958 3.042 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.173 3.827 26 C -0.125 4.125 27 C -0.081 4.081 28 H 0.090 0.910 29 C -0.137 4.137 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.182 0.818 38 H 0.193 0.807 39 H 0.425 0.575 40 H 0.032 0.968 41 H 0.029 0.971 42 H 0.253 0.747 43 H 0.010 0.990 44 H 0.050 0.950 45 H 0.039 0.961 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.881 11.059 2.113 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.195 4.195 4 C -0.070 4.070 5 N -0.178 5.178 6 N -0.102 5.102 7 N -0.087 5.087 8 N -0.092 5.092 9 C -0.034 4.034 10 C 0.281 3.719 11 O -0.457 6.457 12 N -0.342 5.342 13 C 0.044 3.956 14 H 0.067 0.933 15 C 0.018 3.982 16 N -0.331 5.331 17 C -0.399 4.399 18 H 0.067 0.933 19 C -0.234 4.234 20 N -0.570 5.570 21 Si 0.786 3.214 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.047 3.953 26 C -0.165 4.165 27 C -0.100 4.100 28 H 0.109 0.891 29 C -0.194 4.194 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.199 0.801 38 H 0.210 0.790 39 H 0.264 0.736 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.028 0.972 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.195 10.700 3.854 21.457 hybrid contribution -1.421 -0.636 -0.738 1.723 sum 16.773 10.064 3.116 19.808 Atomic orbital electron populations 1.21821 0.92860 1.01487 1.04057 1.20089 0.96871 0.97375 0.88885 1.21838 1.01845 0.91705 1.04114 1.26727 0.93454 0.88589 0.98192 1.74854 1.20470 1.22712 0.99793 1.78546 1.08051 0.99970 1.23663 1.78739 1.20731 1.20668 0.88583 1.48109 1.34313 1.19890 1.06858 1.22561 0.98676 0.95495 0.86636 1.20947 0.87103 0.83278 0.80618 1.90866 1.28947 1.71449 1.54401 1.45633 1.24215 1.33092 1.31220 1.21271 0.89564 0.87813 0.96908 0.93306 1.21223 0.91754 0.90233 0.94946 1.44172 1.01903 1.17554 1.69436 1.19287 0.83125 1.30954 1.06547 0.93309 1.25614 1.01248 1.01936 0.94584 1.70128 1.36488 1.43641 1.06771 0.85500 0.80828 0.78044 0.77045 1.20442 1.21082 1.21021 1.20694 0.93492 0.89062 0.92016 1.22101 0.96915 0.97985 0.99496 1.21234 0.95581 0.94110 0.99092 0.89145 1.21801 0.97421 1.01710 0.98504 0.88351 0.95056 0.92240 0.86141 0.91098 0.88400 0.92557 0.80059 0.78976 0.73628 0.95027 0.95193 0.93817 0.97235 0.93119 0.94212 0.89948 0.91023 0.90379 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.18 71.98 0.66 -2.20 16 2 C -0.01 -0.17 3.26 -11.54 -0.04 -0.20 16 3 C -0.14 -1.47 9.18 71.98 0.66 -0.81 16 4 C 0.21 4.92 6.64 138.13 0.92 5.84 16 5 N -0.33 -10.12 12.36 -50.45 -0.62 -10.75 16 6 N -0.11 -3.66 13.43 37.01 0.50 -3.16 16 7 N -0.10 -2.99 13.29 37.02 0.49 -2.50 16 8 N -0.29 -6.50 2.83 -341.96 -0.97 -7.47 16 9 C 0.09 1.01 6.57 85.63 0.56 1.58 16 10 C 0.50 10.93 7.86 87.66 0.69 11.62 16 11 O -0.58 -21.06 16.09 -3.02 -0.05 -21.10 16 12 N -0.69 -12.82 4.37 -442.16 -1.93 -14.75 16 13 C 0.15 4.56 2.06 45.07 0.09 4.65 16 14 H 0.05 1.90 7.58 -2.38 -0.02 1.89 16 15 C 0.15 5.75 6.09 86.36 0.53 6.28 16 16 N -0.61 -29.97 2.99 -699.09 -2.09 -32.07 16 17 C -0.27 -15.19 9.58 84.03 0.81 -14.38 16 18 H 0.05 2.84 7.89 -2.91 -0.02 2.82 16 19 C -0.04 -2.10 4.92 84.86 0.42 -1.68 16 20 N -0.93 -53.45 11.19 21.65 0.24 -53.21 16 21 Si 0.96 45.63 29.59 68.60 2.03 47.66 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 25 C 0.17 7.82 5.30 86.37 0.46 8.27 16 26 C -0.13 -4.21 5.36 30.67 0.16 -4.05 16 27 C -0.08 -2.05 2.27 -10.77 -0.02 -2.08 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 C -0.14 -2.55 9.02 71.98 0.65 -1.90 16 30 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.12 1.16 6.84 -2.39 -0.02 1.14 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.18 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.19 0.08 7.12 -2.39 -0.02 0.06 16 39 H 0.42 3.53 8.30 -92.71 -0.77 2.76 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 42 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.05 2.67 6.07 -2.39 -0.01 2.66 16 45 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.08 0.99 7.35 -2.39 -0.02 0.97 16 49 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -86.07 396.14 4.32 -81.75 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 0.18 Total: 4.64 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 6.54 Total: 10.95 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -4.39 Total: -123.89 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.05 Total: -21.10 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -86.07 4.32 -81.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968405975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.523 kcal (2) G-P(sol) polarization free energy of solvation -86.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds