Wall clock time and date at job start Tue Mar 31 2020 21:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47655 * 2 1 4 4 C 1.50701 * 109.47158 * 119.99875 * 2 1 3 5 5 N 1.31074 * 126.66218 * 300.03930 * 4 2 1 6 6 N 1.28840 * 107.99115 * 179.97438 * 5 4 2 7 7 N 1.28735 * 109.39610 * 359.73666 * 6 5 4 8 8 N 1.29022 * 108.81265 * 0.43495 * 7 6 5 9 9 C 1.46501 * 126.43835 * 179.83691 * 8 7 6 10 10 C 1.50704 * 109.46934 * 269.68788 * 9 8 7 11 11 O 1.21286 * 119.99983 * 0.02562 * 10 9 8 12 12 N 1.34770 * 119.99927 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99936 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.49821 * 34.99499 * 13 12 10 15 15 C 1.53192 * 109.49563 * 274.93237 * 13 12 10 16 16 N 1.46924 * 108.77784 * 185.41110 * 15 13 12 17 17 C 1.36933 * 120.63798 * 233.59007 * 16 15 13 18 18 H 1.07992 * 120.00552 * 151.83332 * 17 16 15 19 19 C 1.38818 * 119.99653 * 331.83403 * 17 16 15 20 20 N 1.31620 * 119.99712 * 343.07700 * 19 17 16 21 21 Si 1.86799 * 120.00297 * 163.07907 * 19 17 16 22 22 H 1.48495 * 109.47186 * 89.99552 * 21 19 17 23 23 H 1.48495 * 109.47229 * 210.00005 * 21 19 17 24 24 H 1.48508 * 109.46706 * 329.99809 * 21 19 17 25 25 C 1.46934 * 118.73392 * 53.61127 * 16 15 13 26 26 C 1.53186 * 108.77608 * 306.38961 * 25 16 15 27 27 C 1.53036 * 109.49960 * 155.06545 * 13 12 10 28 28 H 1.09005 * 109.46355 * 61.29079 * 27 13 12 29 29 C 1.53004 * 109.46062 * 301.33691 * 27 13 12 30 30 H 1.09000 * 109.47137 * 59.99741 * 1 2 3 31 31 H 1.08987 * 109.47733 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46949 * 300.00538 * 1 2 3 33 33 H 1.09000 * 109.46846 * 239.99356 * 2 1 3 34 34 H 1.08997 * 109.47306 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46469 * 299.99987 * 3 2 1 36 36 H 1.08997 * 109.47135 * 59.99414 * 3 2 1 37 37 H 1.08996 * 109.47181 * 29.68685 * 9 8 7 38 38 H 1.08997 * 109.47046 * 149.69487 * 9 8 7 39 39 H 0.97000 * 119.99955 * 0.02562 * 12 10 9 40 40 H 1.08999 * 109.59105 * 305.20616 * 15 13 12 41 41 H 1.09001 * 109.58895 * 65.62944 * 15 13 12 42 42 H 0.97003 * 119.99918 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58562 * 66.18394 * 25 16 15 44 44 H 1.09007 * 109.58061 * 186.46049 * 25 16 15 45 45 H 1.08994 * 109.49805 * 174.58481 * 26 25 16 46 46 H 1.09002 * 109.49836 * 294.65744 * 26 25 16 47 47 H 1.08994 * 109.47176 * 59.99650 * 29 27 13 48 48 H 1.09001 * 109.47385 * 180.02562 * 29 27 13 49 49 H 1.08998 * 109.46524 * 299.99971 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7970 -0.3788 2.4765 6 7 2.3980 -1.2293 3.2350 7 7 3.0062 -2.0980 2.5052 8 7 2.8093 -1.8090 1.2632 9 6 3.3288 -2.5423 0.1062 10 6 4.6669 -1.9732 -0.2898 11 8 5.1402 -1.0466 0.3334 12 7 5.3375 -2.4939 -1.3364 13 6 6.6385 -1.9410 -1.7210 14 1 7.1779 -1.6252 -0.8281 15 6 6.4295 -0.7369 -2.6447 16 7 7.7394 -0.2757 -3.1242 17 6 8.1161 1.0324 -2.9750 18 1 9.1622 1.2867 -2.8895 19 6 7.1533 2.0315 -2.9336 20 7 5.9330 1.7875 -3.3622 21 14 7.5896 3.7222 -2.2699 22 1 8.0752 4.5799 -3.3805 23 1 6.3857 4.3394 -1.6577 24 1 8.6548 3.5912 -1.2435 25 6 8.6374 -1.2446 -3.7675 26 6 8.8217 -2.4430 -2.8312 27 6 7.4501 -3.0094 -2.4571 28 1 6.9215 -3.3074 -3.3626 29 6 7.6314 -4.2275 -1.5491 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.8932 -0.5139 -0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 3.4438 -3.5948 0.3650 38 1 2.6325 -2.4468 -0.7269 39 1 4.9587 -3.2347 -1.8350 40 1 5.8121 -1.0304 -3.4937 41 1 5.9389 0.0655 -2.0937 42 1 5.2603 2.4858 -3.3337 43 1 8.2002 -1.5795 -4.7081 44 1 9.6028 -0.7763 -3.9595 45 1 9.4076 -3.2116 -3.3352 46 1 9.3416 -2.1227 -1.9283 47 1 6.6545 -4.6316 -1.2840 48 1 8.2099 -4.9884 -2.0730 49 1 8.1594 -3.9298 -0.6432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968405976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:13 Heat of formation + Delta-G solvation = 92.369178 kcal Electronic energy + Delta-G solvation = -30966.913405 eV Core-core repulsion = 26967.165034 eV Total energy + Delta-G solvation = -3999.748371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.13818 -39.95802 -37.90794 -36.18829 -35.33071 -34.54720 -33.34192 -31.46934 -31.08775 -29.94648 -28.32176 -27.36261 -27.26837 -24.40974 -24.21037 -23.55443 -22.34252 -21.20407 -20.81226 -20.35917 -19.54597 -17.82723 -17.74765 -16.92028 -16.21289 -15.90660 -15.53951 -15.25010 -14.81552 -14.56291 -14.04081 -13.85297 -13.76096 -13.52507 -13.39572 -13.34059 -13.15008 -12.77770 -12.50581 -12.27736 -12.19145 -12.10049 -11.80339 -11.73026 -11.70161 -11.40863 -11.28328 -11.24500 -10.98676 -10.90469 -10.81328 -10.75247 -10.56612 -10.26084 -10.16321 -10.02025 -9.95186 -9.68631 -9.58745 -8.81085 -8.51778 -6.75100 -5.85434 -3.28104 1.21918 1.81753 2.33200 2.50911 3.12901 3.36600 3.44400 3.47435 3.84788 4.07655 4.38394 4.42655 4.50246 4.56055 4.86702 4.97175 5.02671 5.12416 5.12550 5.27387 5.40014 5.44898 5.48326 5.53318 5.61095 5.73579 5.77531 5.82274 5.83602 5.86113 5.90707 5.98310 6.07024 6.11147 6.13405 6.24125 6.32838 6.33989 6.36727 6.56944 6.62279 6.72599 6.85934 7.11674 7.53447 7.56739 7.75569 8.19712 8.38835 8.67650 9.13949 9.77409 10.31760 11.22857 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009835 B = 0.004546 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.166914 B = 6157.133670 C = 8074.341080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.208 3.792 5 N -0.303 5.303 6 N -0.077 5.077 7 N -0.090 5.090 8 N -0.293 5.293 9 C 0.091 3.909 10 C 0.496 3.504 11 O -0.509 6.509 12 N -0.708 5.708 13 C 0.124 3.876 14 H 0.083 0.917 15 C 0.167 3.833 16 N -0.587 5.587 17 C -0.257 4.257 18 H 0.066 0.934 19 C 0.009 3.991 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.142 3.858 26 C -0.126 4.126 27 C -0.091 4.091 28 H 0.068 0.932 29 C -0.145 4.145 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.395 0.605 40 H 0.018 0.982 41 H 0.095 0.905 42 H 0.253 0.747 43 H 0.019 0.981 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.051 0.949 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 -12.762 0.225 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.070 4.070 5 N -0.151 5.151 6 N -0.070 5.070 7 N -0.075 5.075 8 N -0.093 5.093 9 C -0.035 4.035 10 C 0.277 3.723 11 O -0.383 6.383 12 N -0.359 5.359 13 C 0.019 3.981 14 H 0.102 0.898 15 C 0.040 3.960 16 N -0.310 5.310 17 C -0.386 4.386 18 H 0.084 0.916 19 C -0.190 4.190 20 N -0.543 5.543 21 Si 0.729 3.271 22 H -0.213 1.213 23 H -0.214 1.214 24 H -0.204 1.204 25 C 0.015 3.985 26 C -0.166 4.166 27 C -0.111 4.111 28 H 0.087 0.913 29 C -0.202 4.202 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.229 0.771 40 H 0.036 0.964 41 H 0.113 0.887 42 H 0.063 0.937 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.042 -12.108 2.118 14.689 hybrid contribution 0.130 0.345 -0.940 1.010 sum -7.912 -11.763 1.177 14.225 Atomic orbital electron populations 1.21841 0.92146 1.02348 1.03666 1.19816 0.97012 0.96963 0.89498 1.21821 1.02656 0.92613 1.03134 1.26118 0.94388 0.88481 0.97979 1.74934 1.20939 1.20836 0.98398 1.78557 1.07001 0.98951 1.22534 1.78830 1.19261 1.22121 0.87296 1.47823 1.33781 1.20943 1.06782 1.22031 0.96807 0.98376 0.86302 1.20135 0.86070 0.84353 0.81729 1.90874 1.67699 1.27214 1.52497 1.45945 1.22113 1.36685 1.31171 1.22139 0.80996 0.95206 0.99766 0.89840 1.21084 0.87777 0.93240 0.93898 1.43935 1.15482 1.05569 1.65980 1.19135 0.92579 0.81972 1.44953 0.91635 1.25005 0.96521 0.97785 0.99707 1.70000 1.03306 1.33141 1.47844 0.86343 0.77625 0.84184 0.78936 1.21316 1.21417 1.20407 1.20974 0.94836 0.89704 0.92948 1.22074 0.95012 0.98569 1.00902 1.21306 0.97343 0.94346 0.98056 0.91329 1.21861 1.00957 0.97597 0.99821 0.90722 0.92614 0.91082 0.88956 0.91375 0.90729 0.91413 0.84341 0.84514 0.77106 0.96381 0.88730 0.93672 0.96342 0.92521 0.92463 0.92082 0.93280 0.92968 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.01 -0.13 3.26 -91.77 -0.30 -0.43 16 3 C -0.14 -1.92 9.18 37.16 0.34 -1.58 16 4 C 0.21 3.02 6.64 -155.43 -1.03 1.98 16 5 N -0.30 -5.12 12.36 32.70 0.40 -4.72 16 6 N -0.08 -1.38 13.43 60.35 0.81 -0.57 16 7 N -0.09 -1.49 13.29 60.35 0.80 -0.69 16 8 N -0.29 -4.11 2.83 -59.44 -0.17 -4.28 16 9 C 0.09 0.89 6.57 -5.19 -0.03 0.86 16 10 C 0.50 7.16 7.87 -10.99 -0.09 7.07 16 11 O -0.51 -10.47 16.09 5.55 0.09 -10.38 16 12 N -0.71 -9.12 4.37 -53.69 -0.23 -9.36 16 13 C 0.12 2.12 2.06 -67.81 -0.14 1.98 16 14 H 0.08 1.73 7.58 -51.93 -0.39 1.33 16 15 C 0.17 3.70 4.88 -3.71 -0.02 3.68 16 16 N -0.59 -14.04 2.99 -172.32 -0.52 -14.55 16 17 C -0.26 -6.94 9.58 -15.06 -0.14 -7.09 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 19 C 0.01 0.24 4.92 -17.43 -0.09 0.16 16 20 N -0.90 -25.24 11.20 55.49 0.62 -24.62 16 21 Si 0.90 21.98 29.59 -169.99 -5.03 16.96 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.14 2.75 6.52 -3.71 -0.02 2.72 16 26 C -0.13 -1.96 5.36 -26.61 -0.14 -2.10 16 27 C -0.09 -1.28 2.27 -90.58 -0.21 -1.49 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 C -0.14 -1.64 9.02 37.16 0.34 -1.31 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.43 8.14 -51.94 -0.42 0.01 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.09 0.92 6.85 -51.93 -0.36 0.56 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.14 0.79 7.13 -51.93 -0.37 0.42 16 39 H 0.40 3.42 8.31 -40.82 -0.34 3.08 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 2.50 6.06 -51.93 -0.31 2.19 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.47 7.36 -51.93 -0.38 0.09 16 48 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -35.42 396.16 -6.48 -41.90 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.03 Total: 0.78 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.20 Total: 3.56 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 1.72 Total: -58.79 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.42 -6.48 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968405976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.269 kcal (2) G-P(sol) polarization free energy of solvation -35.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds