Wall clock time and date at job start Tue Mar 31 2020 21:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47655 * 2 1 4 4 C 1.50701 * 109.47158 * 119.99875 * 2 1 3 5 5 N 1.31074 * 126.66218 * 300.03930 * 4 2 1 6 6 N 1.28840 * 107.99115 * 179.97438 * 5 4 2 7 7 N 1.28735 * 109.39610 * 359.73666 * 6 5 4 8 8 N 1.29022 * 108.81265 * 0.43495 * 7 6 5 9 9 C 1.46501 * 126.43835 * 179.83691 * 8 7 6 10 10 C 1.50704 * 109.46934 * 269.68788 * 9 8 7 11 11 O 1.21286 * 119.99983 * 0.02562 * 10 9 8 12 12 N 1.34770 * 119.99927 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99936 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.49821 * 34.99499 * 13 12 10 15 15 C 1.53192 * 109.49563 * 274.93237 * 13 12 10 16 16 N 1.46924 * 108.77784 * 185.41110 * 15 13 12 17 17 C 1.36933 * 120.63798 * 233.59007 * 16 15 13 18 18 H 1.07992 * 120.00552 * 151.83332 * 17 16 15 19 19 C 1.38818 * 119.99653 * 331.83403 * 17 16 15 20 20 N 1.31620 * 119.99712 * 343.07700 * 19 17 16 21 21 Si 1.86799 * 120.00297 * 163.07907 * 19 17 16 22 22 H 1.48495 * 109.47186 * 89.99552 * 21 19 17 23 23 H 1.48495 * 109.47229 * 210.00005 * 21 19 17 24 24 H 1.48508 * 109.46706 * 329.99809 * 21 19 17 25 25 C 1.46934 * 118.73392 * 53.61127 * 16 15 13 26 26 C 1.53186 * 108.77608 * 306.38961 * 25 16 15 27 27 C 1.53036 * 109.49960 * 155.06545 * 13 12 10 28 28 H 1.09005 * 109.46355 * 61.29079 * 27 13 12 29 29 C 1.53004 * 109.46062 * 301.33691 * 27 13 12 30 30 H 1.09000 * 109.47137 * 59.99741 * 1 2 3 31 31 H 1.08987 * 109.47733 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46949 * 300.00538 * 1 2 3 33 33 H 1.09000 * 109.46846 * 239.99356 * 2 1 3 34 34 H 1.08997 * 109.47306 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46469 * 299.99987 * 3 2 1 36 36 H 1.08997 * 109.47135 * 59.99414 * 3 2 1 37 37 H 1.08996 * 109.47181 * 29.68685 * 9 8 7 38 38 H 1.08997 * 109.47046 * 149.69487 * 9 8 7 39 39 H 0.97000 * 119.99955 * 0.02562 * 12 10 9 40 40 H 1.08999 * 109.59105 * 305.20616 * 15 13 12 41 41 H 1.09001 * 109.58895 * 65.62944 * 15 13 12 42 42 H 0.97003 * 119.99918 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58562 * 66.18394 * 25 16 15 44 44 H 1.09007 * 109.58061 * 186.46049 * 25 16 15 45 45 H 1.08994 * 109.49805 * 174.58481 * 26 25 16 46 46 H 1.09002 * 109.49836 * 294.65744 * 26 25 16 47 47 H 1.08994 * 109.47176 * 59.99650 * 29 27 13 48 48 H 1.09001 * 109.47385 * 180.02562 * 29 27 13 49 49 H 1.08998 * 109.46524 * 299.99971 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7970 -0.3788 2.4765 6 7 2.3980 -1.2293 3.2350 7 7 3.0062 -2.0980 2.5052 8 7 2.8093 -1.8090 1.2632 9 6 3.3288 -2.5423 0.1062 10 6 4.6669 -1.9732 -0.2898 11 8 5.1402 -1.0466 0.3334 12 7 5.3375 -2.4939 -1.3364 13 6 6.6385 -1.9410 -1.7210 14 1 7.1779 -1.6252 -0.8281 15 6 6.4295 -0.7369 -2.6447 16 7 7.7394 -0.2757 -3.1242 17 6 8.1161 1.0324 -2.9750 18 1 9.1622 1.2867 -2.8895 19 6 7.1533 2.0315 -2.9336 20 7 5.9330 1.7875 -3.3622 21 14 7.5896 3.7222 -2.2699 22 1 8.0752 4.5799 -3.3805 23 1 6.3857 4.3394 -1.6577 24 1 8.6548 3.5912 -1.2435 25 6 8.6374 -1.2446 -3.7675 26 6 8.8217 -2.4430 -2.8312 27 6 7.4501 -3.0094 -2.4571 28 1 6.9215 -3.3074 -3.3626 29 6 7.6314 -4.2275 -1.5491 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.8932 -0.5139 -0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 3.4438 -3.5948 0.3650 38 1 2.6325 -2.4468 -0.7269 39 1 4.9587 -3.2347 -1.8350 40 1 5.8121 -1.0304 -3.4937 41 1 5.9389 0.0655 -2.0937 42 1 5.2603 2.4858 -3.3337 43 1 8.2002 -1.5795 -4.7081 44 1 9.6028 -0.7763 -3.9595 45 1 9.4076 -3.2116 -3.3352 46 1 9.3416 -2.1227 -1.9283 47 1 6.6545 -4.6316 -1.2840 48 1 8.2099 -4.9884 -2.0730 49 1 8.1594 -3.9298 -0.6432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968405976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:12 Heat of formation + Delta-G solvation = 66.798675 kcal Electronic energy + Delta-G solvation = -30968.022225 eV Core-core repulsion = 26967.165034 eV Total energy + Delta-G solvation = -4000.857191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -45.30840 -41.22761 -39.32256 -37.19541 -36.48477 -36.12532 -34.79057 -32.86316 -32.58174 -31.25363 -29.57072 -28.87154 -28.16550 -25.92004 -25.51312 -24.83377 -23.67265 -22.67135 -21.95275 -21.55087 -20.94325 -19.00716 -18.84155 -18.72980 -17.40545 -17.13147 -16.94770 -16.41786 -16.38500 -15.65855 -15.58611 -15.29055 -15.15735 -14.97071 -14.58672 -14.39285 -14.24452 -14.11538 -13.78885 -13.58420 -13.31241 -13.20836 -13.14777 -13.07424 -12.75530 -12.72070 -12.59889 -12.50277 -12.37886 -12.35566 -12.31561 -12.20453 -11.94040 -11.92870 -11.64117 -11.50942 -11.22045 -11.16506 -10.88587 -10.55953 -10.18384 -8.68404 -7.92199 -5.35748 0.06343 0.84101 1.10959 1.35969 1.39907 1.41537 1.47754 2.02774 2.45377 2.84636 3.13312 3.23546 3.42664 3.58925 3.78822 3.83494 3.87176 3.97066 3.99777 4.01533 4.15533 4.17813 4.34660 4.46602 4.58866 4.62002 4.67675 4.71009 4.72488 4.76414 4.87507 4.92013 4.93132 4.98521 5.10271 5.12605 5.18494 5.19625 5.20881 5.28498 5.32338 5.38865 5.46356 5.52653 5.61298 5.77422 6.34234 6.45525 7.10896 7.16630 7.46177 7.84360 8.31945 9.12320 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009835 B = 0.004546 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.166914 B = 6157.133670 C = 8074.341080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.010 4.010 3 C -0.141 4.141 4 C 0.209 3.791 5 N -0.328 5.328 6 N -0.107 5.107 7 N -0.099 5.099 8 N -0.290 5.290 9 C 0.091 3.909 10 C 0.493 3.507 11 O -0.579 6.579 12 N -0.689 5.689 13 C 0.141 3.859 14 H 0.042 0.958 15 C 0.178 3.822 16 N -0.609 5.609 17 C -0.267 4.267 18 H 0.060 0.940 19 C -0.039 4.039 20 N -0.919 5.919 21 Si 0.948 3.052 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.281 1.281 25 C 0.136 3.864 26 C -0.118 4.118 27 C -0.083 4.083 28 H 0.089 0.911 29 C -0.137 4.137 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.022 0.978 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.185 0.815 38 H 0.188 0.812 39 H 0.422 0.578 40 H 0.011 0.989 41 H 0.045 0.955 42 H 0.249 0.751 43 H 0.027 0.973 44 H 0.049 0.951 45 H 0.095 0.905 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 -16.003 -1.385 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.031 4.031 3 C -0.199 4.199 4 C -0.069 4.069 5 N -0.177 5.177 6 N -0.101 5.101 7 N -0.085 5.085 8 N -0.091 5.091 9 C -0.033 4.033 10 C 0.277 3.723 11 O -0.458 6.458 12 N -0.341 5.341 13 C 0.035 3.965 14 H 0.060 0.940 15 C 0.051 3.949 16 N -0.333 5.333 17 C -0.398 4.398 18 H 0.078 0.922 19 C -0.236 4.236 20 N -0.565 5.565 21 Si 0.777 3.223 22 H -0.202 1.202 23 H -0.222 1.222 24 H -0.207 1.207 25 C 0.011 3.989 26 C -0.157 4.157 27 C -0.102 4.102 28 H 0.107 0.893 29 C -0.194 4.194 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.041 0.959 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.202 0.798 38 H 0.205 0.795 39 H 0.261 0.739 40 H 0.029 0.971 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.114 0.886 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.053 -15.427 0.468 17.893 hybrid contribution 0.525 1.364 -0.514 1.549 sum -8.528 -14.063 -0.046 16.447 Atomic orbital electron populations 1.21824 0.89567 1.03718 1.04148 1.20032 0.98970 0.95206 0.88918 1.21774 0.99607 0.94696 1.03849 1.26635 0.93748 0.88383 0.98110 1.74847 1.21880 1.21318 0.99643 1.78513 1.08158 0.99809 1.23608 1.78715 1.19130 1.22242 0.88446 1.48086 1.33098 1.20988 1.06911 1.22542 0.94571 0.99624 0.86536 1.20958 0.87306 0.83133 0.80882 1.90869 1.69711 1.30414 1.54768 1.45625 1.20660 1.36846 1.31018 1.21525 0.83003 0.94919 0.97069 0.93983 1.20823 0.86734 0.93644 0.93684 1.44203 1.16545 1.05446 1.67108 1.19392 0.92439 0.83853 1.44079 0.92197 1.25585 0.96787 1.00460 1.00720 1.70100 1.03738 1.33547 1.49070 0.85572 0.76850 0.81421 0.78463 1.20162 1.22151 1.20677 1.21164 0.93559 0.90198 0.93960 1.21979 0.96510 0.97789 0.99468 1.21269 0.95804 0.94155 0.99012 0.89278 1.21794 1.02619 0.96450 0.98549 0.88572 0.90798 0.92277 0.86776 0.95887 0.88854 0.91906 0.79765 0.79492 0.73903 0.97129 0.93682 0.94175 0.95549 0.93196 0.88646 0.93825 0.90939 0.90528 0.94553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.18 71.98 0.66 -1.38 16 2 C -0.01 -0.21 3.26 -11.54 -0.04 -0.25 16 3 C -0.14 -3.85 9.18 71.98 0.66 -3.19 16 4 C 0.21 5.93 6.64 138.13 0.92 6.84 16 5 N -0.33 -11.29 12.36 -50.45 -0.62 -11.91 16 6 N -0.11 -3.94 13.43 37.01 0.50 -3.44 16 7 N -0.10 -3.25 13.29 37.02 0.49 -2.76 16 8 N -0.29 -7.72 2.83 -341.97 -0.97 -8.68 16 9 C 0.09 1.46 6.57 85.63 0.56 2.02 16 10 C 0.49 13.62 7.87 87.66 0.69 14.31 16 11 O -0.58 -24.69 16.09 -3.05 -0.05 -24.74 16 12 N -0.69 -16.25 4.37 -442.17 -1.93 -18.18 16 13 C 0.14 4.77 2.06 45.07 0.09 4.87 16 14 H 0.04 1.80 7.58 -2.39 -0.02 1.78 16 15 C 0.18 8.06 4.88 86.36 0.42 8.48 16 16 N -0.61 -29.78 2.99 -699.09 -2.09 -31.88 16 17 C -0.27 -14.94 9.58 84.04 0.81 -14.13 16 18 H 0.06 3.32 7.88 -2.91 -0.02 3.30 16 19 C -0.04 -2.21 4.92 84.86 0.42 -1.80 16 20 N -0.92 -53.46 11.20 21.65 0.24 -53.22 16 21 Si 0.95 46.77 29.59 68.60 2.03 48.80 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 24 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 25 C 0.14 5.20 6.52 86.36 0.56 5.76 16 26 C -0.12 -3.42 5.36 30.67 0.16 -3.26 16 27 C -0.08 -2.10 2.27 -10.77 -0.02 -2.12 16 28 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 29 C -0.14 -2.53 9.02 71.98 0.65 -1.88 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.11 1.94 6.85 -2.39 -0.02 1.93 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.19 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.19 1.13 7.13 -2.39 -0.02 1.11 16 39 H 0.42 5.42 8.31 -92.71 -0.77 4.65 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.04 2.50 6.06 -2.39 -0.01 2.48 16 42 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 1.92 7.93 -2.38 -0.02 1.91 16 45 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.07 1.01 7.36 -2.39 -0.02 0.99 16 48 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -86.40 396.16 4.32 -82.08 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.18 Total: 9.65 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 6.54 Total: 14.28 kcal Atomic # 7 Polarization: -125.69 SS G_CDS: -4.39 Total: -130.07 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.05 Total: -24.74 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -86.40 4.32 -82.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968405976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.877 kcal (2) G-P(sol) polarization free energy of solvation -86.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds