Wall clock time and date at job start Tue Mar 31 2020 19:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99479 * 2 1 4 4 H 1.08001 * 119.99304 * 160.70334 * 3 2 1 5 5 C 1.38806 * 120.00498 * 340.43308 * 3 2 1 6 6 N 1.31617 * 119.99781 * 347.10237 * 5 3 2 7 7 Si 1.86794 * 120.00189 * 167.10612 * 5 3 2 8 8 H 1.48499 * 109.47441 * 59.99874 * 7 5 3 9 9 H 1.48505 * 109.47305 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47273 * 299.99659 * 7 5 3 11 11 C 1.46497 * 120.00505 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88909 * 180.70158 * 11 2 1 13 13 C 1.55153 * 111.00018 * 304.57760 * 11 2 1 14 14 C 1.54330 * 102.94158 * 153.57660 * 13 11 2 15 15 N 1.47019 * 107.26907 * 337.80489 * 14 13 11 16 16 C 1.34780 * 125.64652 * 178.99307 * 15 14 13 17 17 O 1.21273 * 119.99947 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99979 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.46776 * 179.97438 * 18 16 15 20 20 N 1.33315 * 126.54750 * 90.03047 * 19 18 16 21 21 N 1.29000 * 107.35519 * 179.97438 * 20 19 18 22 22 N 1.28778 * 108.72334 * 359.97438 * 21 20 19 23 23 C 1.46501 * 125.44992 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.47044 * 0.03079 * 23 22 21 25 25 C 1.53004 * 109.46966 * 120.02341 * 23 22 21 26 26 C 1.52994 * 109.47505 * 240.03150 * 23 22 21 27 27 N 1.28887 * 109.10630 * 359.73611 * 22 21 20 28 28 C 1.47464 * 108.72344 * 358.97474 * 15 14 13 29 29 H 1.09000 * 109.47229 * 84.82146 * 1 2 3 30 30 H 1.08999 * 109.46892 * 204.82105 * 1 2 3 31 31 H 1.08995 * 109.47048 * 324.81866 * 1 2 3 32 32 H 0.97002 * 120.00076 * 180.02562 * 6 5 3 33 33 H 1.09003 * 110.72533 * 271.93603 * 13 11 2 34 34 H 1.09002 * 110.72334 * 35.21168 * 13 11 2 35 35 H 1.08997 * 109.88199 * 97.22697 * 14 13 11 36 36 H 1.09005 * 109.88088 * 218.23690 * 14 13 11 37 37 H 1.08999 * 109.46782 * 299.99960 * 18 16 15 38 38 H 1.09006 * 109.46904 * 59.99928 * 18 16 15 39 39 H 1.09005 * 109.46890 * 59.99377 * 24 23 22 40 40 H 1.08998 * 109.47565 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.46582 * 300.00071 * 24 23 22 42 42 H 1.08999 * 109.46605 * 60.00698 * 25 23 22 43 43 H 1.09003 * 109.47220 * 180.02562 * 25 23 22 44 44 H 1.08992 * 109.47467 * 300.00638 * 25 23 22 45 45 H 1.09000 * 109.47319 * 60.00036 * 26 23 22 46 46 H 1.09003 * 109.47174 * 180.02562 * 26 23 22 47 47 H 1.08993 * 109.47026 * 299.99487 * 26 23 22 48 48 H 1.08994 * 110.35062 * 265.25044 * 28 15 14 49 49 H 1.09003 * 110.40190 * 142.91419 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1841 1.2122 0.3091 5 6 1.5157 2.3534 -0.4026 6 7 0.3545 2.2926 -1.0192 7 14 2.3106 4.0106 -0.0692 8 1 3.6328 4.0698 -0.7426 9 1 1.4392 5.0922 -0.5946 10 1 2.4920 4.1872 1.3940 11 6 2.1976 -1.2686 -0.0006 12 1 3.2738 -1.0960 0.0120 13 6 1.7638 -2.1618 1.1916 14 6 2.0560 -3.5879 0.6794 15 7 2.0777 -3.5282 -0.7894 16 6 2.3203 -4.5661 -1.6143 17 8 2.3125 -4.4006 -2.8156 18 6 2.6012 -5.9324 -1.0437 19 6 2.8366 -6.9076 -2.1682 20 7 4.0075 -7.1966 -2.7363 21 7 3.7833 -8.0745 -3.6546 22 7 2.5231 -8.3385 -3.6753 23 6 1.8684 -9.2869 -4.5798 24 6 2.9146 -9.9194 -5.4999 25 6 1.1813 -10.3815 -3.7608 26 6 0.8258 -8.5506 -5.4234 27 7 1.9305 -7.6388 -2.7695 28 6 1.7898 -2.1448 -1.2112 29 1 -0.3634 0.0928 -1.0235 30 1 -0.3633 -0.9327 0.4314 31 1 -0.3633 0.8399 0.5921 32 1 -0.0884 3.1084 -1.3009 33 1 2.3603 -1.9402 2.0767 34 1 0.7012 -2.0371 1.4004 35 1 3.0238 -3.9243 1.0512 36 1 1.2735 -4.2694 1.0134 37 1 3.4873 -5.8865 -0.4105 38 1 1.7476 -6.2611 -0.4508 39 1 3.6574 -10.4440 -4.8989 40 1 2.4276 -10.6254 -6.1726 41 1 3.4041 -9.1396 -6.0833 42 1 0.4360 -9.9309 -3.1053 43 1 0.6945 -11.0874 -4.4338 44 1 1.9240 -10.9060 -3.1598 45 1 1.3154 -7.7709 -6.0069 46 1 0.3384 -9.2564 -6.0960 47 1 0.0805 -8.1001 -4.7680 48 1 0.7273 -2.0268 -1.4241 49 1 2.3843 -1.8829 -2.0865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971597342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:44 Heat of formation + Delta-G solvation = 122.068179 kcal Electronic energy + Delta-G solvation = -29309.128773 eV Core-core repulsion = 25310.668247 eV Total energy + Delta-G solvation = -3998.460526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.39635 -39.78453 -38.00039 -37.40495 -34.82400 -33.62568 -33.26420 -31.72123 -30.05068 -29.47050 -28.05234 -28.01290 -27.49702 -26.06708 -24.70518 -23.83007 -22.45245 -22.17860 -20.81950 -19.33047 -19.07523 -17.51455 -17.27083 -17.07566 -16.68459 -16.00836 -15.38410 -15.02351 -14.72012 -14.59520 -14.38218 -14.08492 -13.77638 -13.48093 -13.33614 -13.23194 -12.98363 -12.82932 -12.74569 -12.59954 -12.39578 -12.33269 -12.15376 -12.03324 -11.93645 -11.88390 -11.50778 -11.48320 -10.95447 -10.89334 -10.87489 -10.81466 -10.51581 -10.44099 -10.30257 -10.27997 -9.90566 -9.81813 -9.60206 -8.59762 -8.33186 -6.85639 -5.76108 -3.21080 1.20936 1.70921 2.09389 2.78090 3.19625 3.38539 3.43831 3.44641 3.66918 3.96302 4.06088 4.16514 4.42912 4.46049 4.62807 4.89924 4.93503 4.98592 5.00794 5.07121 5.09418 5.15899 5.17798 5.23634 5.29879 5.38581 5.45526 5.49001 5.53861 5.60632 5.63495 5.68538 5.79602 5.84651 5.89992 6.00644 6.16222 6.30041 6.38084 6.51882 6.62586 6.78298 6.86958 7.36985 7.69069 7.76538 7.78882 8.31106 8.35200 8.35919 9.18609 9.81068 10.28017 11.28573 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.002098 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.178789 B =13340.343825 C =13583.488032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.909 3.091 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.612 5.612 16 C 0.532 3.468 17 O -0.538 6.538 18 C -0.040 4.040 19 C 0.189 3.811 20 N -0.276 5.276 21 N -0.064 5.064 22 N -0.131 5.131 23 C 0.179 3.821 24 C -0.152 4.152 25 C -0.157 4.157 26 C -0.160 4.160 27 N -0.296 5.296 28 C 0.088 3.912 29 H 0.030 0.970 30 H 0.001 0.999 31 H 0.048 0.952 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.475 -26.821 -1.723 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.023 4.023 15 N -0.346 5.346 16 C 0.318 3.682 17 O -0.415 6.415 18 C -0.083 4.083 19 C -0.094 4.094 20 N -0.147 5.147 21 N -0.056 5.056 22 N -0.045 5.045 23 C 0.098 3.902 24 C -0.210 4.210 25 C -0.216 4.216 26 C -0.218 4.218 27 N -0.146 5.146 28 C -0.036 4.036 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.679 -26.976 -2.958 27.146 hybrid contribution 0.010 1.247 0.440 1.323 sum 0.689 -25.729 -2.518 25.861 Atomic orbital electron populations 1.20841 0.82230 0.95675 0.99619 1.43898 1.02022 0.99864 1.84832 1.19214 0.96545 0.84605 1.38504 0.91052 1.25003 0.97585 0.98528 0.98518 1.70083 1.16904 1.26946 1.41224 0.86273 0.78449 0.83435 0.77999 1.20895 1.21638 1.21016 1.21449 0.96433 0.85746 0.90180 0.90326 1.23205 1.02956 0.92804 1.00391 1.22094 1.00908 0.99397 0.79883 1.48471 1.69264 1.09753 1.07122 1.19697 0.77426 0.84740 0.86343 1.90732 1.51777 1.84322 1.14666 1.19847 1.05958 0.89230 0.93232 1.24619 0.85780 0.98977 1.00072 1.75801 1.23960 1.09622 1.05331 1.78876 0.99243 1.11738 1.15768 1.50398 1.04214 1.27335 1.22522 1.21363 0.93950 0.86817 0.88070 1.22085 0.98032 1.01842 0.99086 1.22221 1.01444 0.97078 1.00815 1.22236 0.98172 1.01320 1.00067 1.74534 1.26733 1.09079 1.04244 1.23152 1.01228 0.78628 1.00638 0.95211 0.98039 0.93328 0.93583 0.90433 0.90335 0.91554 0.91828 0.85795 0.86204 0.90662 0.89325 0.90541 0.90407 0.89241 0.91481 0.91230 0.89272 0.90362 0.91398 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 7.71 59.85 0.46 4.28 16 2 N -0.59 -14.13 2.97 -171.04 -0.51 -14.64 16 3 C -0.26 -6.94 9.66 -15.06 -0.15 -7.09 16 4 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 5 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 6 N -0.91 -26.13 10.50 55.49 0.58 -25.54 16 7 Si 0.91 21.64 29.57 -169.99 -5.03 16.61 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.17 3.37 3.54 -65.78 -0.23 3.13 16 12 H 0.08 1.55 7.92 -51.93 -0.41 1.14 16 13 C -0.15 -2.30 6.48 -24.89 -0.16 -2.46 16 14 C 0.10 1.23 6.49 -3.06 -0.02 1.21 16 15 N -0.61 -9.73 3.33 -170.49 -0.57 -10.30 16 16 C 0.53 8.77 7.84 -10.98 -0.09 8.69 16 17 O -0.54 -11.37 16.29 5.56 0.09 -11.28 16 18 C -0.04 -0.48 5.52 -29.03 -0.16 -0.64 16 19 C 0.19 2.77 6.86 -156.63 -1.07 1.69 16 20 N -0.28 -4.40 12.50 32.44 0.41 -4.00 16 21 N -0.06 -0.92 12.24 60.35 0.74 -0.18 16 22 N -0.13 -1.62 3.73 0.48 0.00 -1.62 16 23 C 0.18 1.40 1.30 -131.82 -0.17 1.23 16 24 C -0.15 -0.90 7.91 37.16 0.29 -0.61 16 25 C -0.16 -0.88 8.66 37.16 0.32 -0.56 16 26 C -0.16 -1.16 8.67 37.15 0.32 -0.84 16 27 N -0.30 -4.13 11.83 32.46 0.38 -3.74 16 28 C 0.09 1.70 6.49 -2.51 -0.02 1.68 16 29 H 0.03 0.78 7.43 -51.93 -0.39 0.39 16 30 H 0.00 0.02 6.17 -51.93 -0.32 -0.30 16 31 H 0.05 1.25 7.10 -51.93 -0.37 0.88 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.23 6.17 -51.93 -0.32 0.91 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 1.41 7.20 -51.93 -0.37 1.04 16 49 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 LS Contribution 396.66 15.07 5.98 5.98 Total: -1.00 -35.15 396.66 -6.74 -41.89 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -8.06 Total: -2.87 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -0.76 Total: 9.69 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 1.04 Total: -60.02 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.15 -6.74 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971597342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.954 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds