Wall clock time and date at job start Tue Mar 31 2020 19:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99479 * 2 1 4 4 H 1.08001 * 119.99304 * 160.70334 * 3 2 1 5 5 C 1.38806 * 120.00498 * 340.43308 * 3 2 1 6 6 N 1.31617 * 119.99781 * 347.10237 * 5 3 2 7 7 Si 1.86794 * 120.00189 * 167.10612 * 5 3 2 8 8 H 1.48499 * 109.47441 * 59.99874 * 7 5 3 9 9 H 1.48505 * 109.47305 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47273 * 299.99659 * 7 5 3 11 11 C 1.46497 * 120.00505 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88909 * 180.70158 * 11 2 1 13 13 C 1.55153 * 111.00018 * 304.57760 * 11 2 1 14 14 C 1.54330 * 102.94158 * 153.57660 * 13 11 2 15 15 N 1.47019 * 107.26907 * 337.80489 * 14 13 11 16 16 C 1.34780 * 125.64652 * 178.99307 * 15 14 13 17 17 O 1.21273 * 119.99947 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99979 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.46776 * 179.97438 * 18 16 15 20 20 N 1.33315 * 126.54750 * 90.03047 * 19 18 16 21 21 N 1.29000 * 107.35519 * 179.97438 * 20 19 18 22 22 N 1.28778 * 108.72334 * 359.97438 * 21 20 19 23 23 C 1.46501 * 125.44992 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.47044 * 0.03079 * 23 22 21 25 25 C 1.53004 * 109.46966 * 120.02341 * 23 22 21 26 26 C 1.52994 * 109.47505 * 240.03150 * 23 22 21 27 27 N 1.28887 * 109.10630 * 359.73611 * 22 21 20 28 28 C 1.47464 * 108.72344 * 358.97474 * 15 14 13 29 29 H 1.09000 * 109.47229 * 84.82146 * 1 2 3 30 30 H 1.08999 * 109.46892 * 204.82105 * 1 2 3 31 31 H 1.08995 * 109.47048 * 324.81866 * 1 2 3 32 32 H 0.97002 * 120.00076 * 180.02562 * 6 5 3 33 33 H 1.09003 * 110.72533 * 271.93603 * 13 11 2 34 34 H 1.09002 * 110.72334 * 35.21168 * 13 11 2 35 35 H 1.08997 * 109.88199 * 97.22697 * 14 13 11 36 36 H 1.09005 * 109.88088 * 218.23690 * 14 13 11 37 37 H 1.08999 * 109.46782 * 299.99960 * 18 16 15 38 38 H 1.09006 * 109.46904 * 59.99928 * 18 16 15 39 39 H 1.09005 * 109.46890 * 59.99377 * 24 23 22 40 40 H 1.08998 * 109.47565 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.46582 * 300.00071 * 24 23 22 42 42 H 1.08999 * 109.46605 * 60.00698 * 25 23 22 43 43 H 1.09003 * 109.47220 * 180.02562 * 25 23 22 44 44 H 1.08992 * 109.47467 * 300.00638 * 25 23 22 45 45 H 1.09000 * 109.47319 * 60.00036 * 26 23 22 46 46 H 1.09003 * 109.47174 * 180.02562 * 26 23 22 47 47 H 1.08993 * 109.47026 * 299.99487 * 26 23 22 48 48 H 1.08994 * 110.35062 * 265.25044 * 28 15 14 49 49 H 1.09003 * 110.40190 * 142.91419 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1841 1.2122 0.3091 5 6 1.5157 2.3534 -0.4026 6 7 0.3545 2.2926 -1.0192 7 14 2.3106 4.0106 -0.0692 8 1 3.6328 4.0698 -0.7426 9 1 1.4392 5.0922 -0.5946 10 1 2.4920 4.1872 1.3940 11 6 2.1976 -1.2686 -0.0006 12 1 3.2738 -1.0960 0.0120 13 6 1.7638 -2.1618 1.1916 14 6 2.0560 -3.5879 0.6794 15 7 2.0777 -3.5282 -0.7894 16 6 2.3203 -4.5661 -1.6143 17 8 2.3125 -4.4006 -2.8156 18 6 2.6012 -5.9324 -1.0437 19 6 2.8366 -6.9076 -2.1682 20 7 4.0075 -7.1966 -2.7363 21 7 3.7833 -8.0745 -3.6546 22 7 2.5231 -8.3385 -3.6753 23 6 1.8684 -9.2869 -4.5798 24 6 2.9146 -9.9194 -5.4999 25 6 1.1813 -10.3815 -3.7608 26 6 0.8258 -8.5506 -5.4234 27 7 1.9305 -7.6388 -2.7695 28 6 1.7898 -2.1448 -1.2112 29 1 -0.3634 0.0928 -1.0235 30 1 -0.3633 -0.9327 0.4314 31 1 -0.3633 0.8399 0.5921 32 1 -0.0884 3.1084 -1.3009 33 1 2.3603 -1.9402 2.0767 34 1 0.7012 -2.0371 1.4004 35 1 3.0238 -3.9243 1.0512 36 1 1.2735 -4.2694 1.0134 37 1 3.4873 -5.8865 -0.4105 38 1 1.7476 -6.2611 -0.4508 39 1 3.6574 -10.4440 -4.8989 40 1 2.4276 -10.6254 -6.1726 41 1 3.4041 -9.1396 -6.0833 42 1 0.4360 -9.9309 -3.1053 43 1 0.6945 -11.0874 -4.4338 44 1 1.9240 -10.9060 -3.1598 45 1 1.3154 -7.7709 -6.0069 46 1 0.3384 -9.2564 -6.0960 47 1 0.0805 -8.1001 -4.7680 48 1 0.7273 -2.0268 -1.4241 49 1 2.3843 -1.8829 -2.0865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971597342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:43 Heat of formation + Delta-G solvation = 97.613787 kcal Electronic energy + Delta-G solvation = -29310.189195 eV Core-core repulsion = 25310.668247 eV Total energy + Delta-G solvation = -3999.520948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.40090 -41.11758 -39.03989 -38.53646 -36.57104 -34.68226 -34.21973 -33.46947 -31.50879 -30.61710 -29.12539 -28.53249 -28.37085 -28.06401 -25.67873 -25.34772 -23.96883 -23.28074 -21.63811 -20.94483 -20.28893 -18.96273 -18.60138 -18.01056 -17.83952 -17.53722 -16.74661 -16.46339 -15.91407 -15.52136 -15.20300 -15.16894 -15.00847 -14.88404 -14.67229 -14.36619 -14.23611 -14.04548 -13.77398 -13.45984 -13.42459 -13.23711 -13.18731 -13.10093 -12.87930 -12.86054 -12.73642 -12.57150 -12.48249 -12.37572 -12.18753 -12.16857 -12.04658 -11.96377 -11.86997 -11.79994 -11.40531 -11.34450 -10.87512 -10.62817 -9.68322 -8.83445 -7.83558 -5.30413 0.20244 0.90235 1.02835 1.47866 1.49587 1.53094 1.56383 1.97517 2.51698 2.78679 3.14490 3.28154 3.49124 3.51655 3.57733 3.59977 3.66381 3.95208 4.05091 4.20050 4.23910 4.36855 4.41039 4.44858 4.48776 4.50902 4.52042 4.59700 4.63111 4.70921 4.72394 4.74302 4.78349 4.81766 4.91853 5.00735 5.05500 5.10504 5.20570 5.21765 5.25850 5.34609 5.35850 5.47209 5.63530 5.74304 6.30084 6.51781 7.05278 7.13598 7.31925 7.84987 8.27003 9.19386 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.002098 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.178789 B =13340.343825 C =13583.488032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.603 5.603 3 C -0.264 4.264 4 H 0.077 0.923 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.972 3.028 8 H -0.279 1.279 9 H -0.297 1.297 10 H -0.273 1.273 11 C 0.164 3.836 12 H 0.074 0.926 13 C -0.140 4.140 14 C 0.101 3.899 15 N -0.609 5.609 16 C 0.528 3.472 17 O -0.596 6.596 18 C -0.028 4.028 19 C 0.174 3.826 20 N -0.309 5.309 21 N -0.078 5.078 22 N -0.119 5.119 23 C 0.161 3.839 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.156 4.156 27 N -0.305 5.305 28 C 0.098 3.902 29 H -0.006 1.006 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.248 0.752 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.125 0.875 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.128 0.872 47 H 0.061 0.939 48 H 0.048 0.952 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 -29.758 0.084 29.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.324 5.324 3 C -0.394 4.394 4 H 0.095 0.905 5 C -0.252 4.252 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.205 1.205 9 H -0.224 1.224 10 H -0.199 1.199 11 C 0.055 3.945 12 H 0.093 0.907 13 C -0.179 4.179 14 C -0.020 4.020 15 N -0.342 5.342 16 C 0.317 3.683 17 O -0.477 6.477 18 C -0.070 4.070 19 C -0.109 4.109 20 N -0.179 5.179 21 N -0.070 5.070 22 N -0.035 5.035 23 C 0.082 3.918 24 C -0.207 4.207 25 C -0.209 4.209 26 C -0.215 4.215 27 N -0.156 5.156 28 C -0.027 4.027 29 H 0.013 0.987 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.090 0.910 40 H 0.144 0.856 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.143 0.857 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.147 0.853 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.986 -29.966 -1.099 30.002 hybrid contribution -0.087 2.049 -0.215 2.062 sum 0.898 -27.917 -1.314 27.962 Atomic orbital electron populations 1.20517 0.82466 0.96312 0.97265 1.44094 1.02207 1.00935 1.85144 1.19601 0.96855 0.85814 1.37142 0.90493 1.25797 0.98381 1.01903 0.99075 1.70269 1.18412 1.27131 1.42930 0.85265 0.77353 0.79205 0.78149 1.20455 1.22376 1.19905 1.21639 0.95853 0.84669 0.92333 0.90748 1.23072 1.02887 0.93128 0.98811 1.22403 1.04472 0.98247 0.76914 1.48486 1.68732 1.07985 1.08977 1.20502 0.76038 0.86150 0.85634 1.90711 1.54247 1.85351 1.17392 1.19990 1.08942 0.85390 0.92715 1.25108 0.85519 0.99535 1.00771 1.75745 1.25165 1.10663 1.06303 1.78790 1.00305 1.12044 1.15880 1.50963 1.03768 1.26777 1.22001 1.22019 0.94624 0.86843 0.88310 1.22137 0.97733 1.01820 0.98980 1.22239 1.00971 0.96590 1.01071 1.22267 0.97533 1.01657 1.00018 1.74499 1.26958 1.09446 1.04696 1.22694 0.99200 0.81416 0.99428 0.98734 0.94432 0.95905 0.94328 0.88343 0.90796 0.87821 0.87985 0.82535 0.82446 0.90974 0.85592 0.92270 0.91437 0.85692 0.91678 0.93428 0.85350 0.91951 0.93412 0.94536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.72 7.71 127.77 0.98 9.71 16 2 N -0.60 -29.41 2.97 -695.04 -2.06 -31.48 16 3 C -0.26 -14.30 9.66 84.03 0.81 -13.49 16 4 H 0.08 3.99 7.82 -2.91 -0.02 3.96 16 5 C -0.06 -3.19 5.11 84.86 0.43 -2.75 16 6 N -0.94 -56.21 10.50 21.65 0.23 -55.98 16 7 Si 0.97 45.20 29.57 68.60 2.03 47.23 16 8 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 9 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 C 0.16 6.30 3.54 46.38 0.16 6.47 16 12 H 0.07 2.90 7.92 -2.39 -0.02 2.88 16 13 C -0.14 -3.73 6.48 31.78 0.21 -3.52 16 14 C 0.10 2.01 6.49 86.73 0.56 2.57 16 15 N -0.61 -18.31 3.33 -811.69 -2.70 -21.01 16 16 C 0.53 16.84 7.84 87.66 0.69 17.52 16 17 O -0.60 -25.88 16.29 -3.01 -0.05 -25.93 16 18 C -0.03 -0.61 5.52 29.10 0.16 -0.44 16 19 C 0.17 4.92 6.86 138.55 0.95 5.87 16 20 N -0.31 -9.80 12.50 -51.26 -0.64 -10.44 16 21 N -0.08 -2.26 12.24 37.02 0.45 -1.80 16 22 N -0.12 -2.90 3.73 -152.39 -0.57 -3.47 16 23 C 0.16 2.30 1.30 3.60 0.00 2.31 16 24 C -0.15 -1.52 7.91 71.98 0.57 -0.95 16 25 C -0.15 -1.32 8.66 71.98 0.62 -0.70 16 26 C -0.16 -2.10 8.67 71.98 0.62 -1.48 16 27 N -0.31 -8.30 11.83 -51.20 -0.61 -8.90 16 28 C 0.10 3.89 6.49 86.85 0.56 4.45 16 29 H -0.01 -0.32 7.43 -2.39 -0.02 -0.33 16 30 H 0.04 1.52 6.17 -2.39 -0.01 1.50 16 31 H 0.02 1.19 7.10 -2.39 -0.02 1.17 16 32 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.07 6.17 -2.39 -0.01 2.06 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.16 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 46 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.05 2.06 7.20 -2.39 -0.02 2.05 16 49 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 Total: -1.00 -83.28 396.66 4.37 -78.92 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.94 Total: 7.31 kcal Atomic # 6 Polarization: 18.21 SS G_CDS: 7.35 Total: 25.55 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -5.90 Total: -133.07 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.93 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -83.28 4.37 -78.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971597342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.530 kcal (2) G-P(sol) polarization free energy of solvation -83.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds