Wall clock time and date at job start Tue Mar 31 2020 19:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47418 * 2 1 4 4 C 1.52995 * 109.46780 * 239.99356 * 2 1 3 5 5 N 1.46504 * 109.46591 * 120.00092 * 2 1 3 6 6 N 1.28720 * 125.32496 * 0.02562 * 5 2 1 7 7 N 1.28975 * 108.99066 * 180.02562 * 6 5 2 8 8 C 1.34191 * 107.25389 * 0.02562 * 7 6 5 9 9 C 1.48003 * 126.70117 * 179.97438 * 8 7 6 10 10 O 1.21542 * 119.99916 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99991 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00025 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.63962 * 36.69574 * 12 11 9 14 14 C 1.54321 * 110.72384 * 273.55367 * 12 11 9 15 15 N 1.47026 * 107.26791 * 263.65067 * 14 12 11 16 16 C 1.36940 * 125.64258 * 181.03445 * 15 14 12 17 17 H 1.08003 * 119.99660 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00559 * 0.02875 * 16 15 14 19 19 N 1.31617 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00230 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46531 * 60.00328 * 20 18 16 22 22 H 1.48502 * 109.47014 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47009 * 300.00047 * 20 18 16 24 24 C 1.47419 * 108.70576 * 1.06162 * 15 14 12 25 25 C 1.54905 * 104.92834 * 335.81449 * 24 15 14 26 26 C 1.53000 * 111.00859 * 155.14142 * 25 24 15 27 27 C 1.53007 * 111.00473 * 278.99353 * 25 24 15 28 28 N 1.28873 * 125.31755 * 180.34075 * 5 2 1 29 29 H 1.09001 * 109.47111 * 300.00327 * 1 2 3 30 30 H 1.09000 * 109.46969 * 59.99982 * 1 2 3 31 31 H 1.08998 * 109.47384 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47178 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46787 * 299.99361 * 3 2 1 34 34 H 1.08996 * 109.47646 * 59.99558 * 3 2 1 35 35 H 1.08998 * 109.47665 * 300.00444 * 4 2 1 36 36 H 1.08999 * 109.47309 * 60.00351 * 4 2 1 37 37 H 1.09002 * 109.46960 * 180.02562 * 4 2 1 38 38 H 0.97004 * 119.99985 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.88101 * 144.23586 * 14 12 11 40 40 H 1.08997 * 110.01327 * 23.13953 * 14 12 11 41 41 H 0.97004 * 120.00521 * 179.97438 * 19 18 16 42 42 H 1.09002 * 110.36926 * 94.70918 * 24 15 14 43 43 H 1.08995 * 110.36556 * 216.92202 * 24 15 14 44 44 H 1.09000 * 109.47194 * 61.45060 * 26 25 24 45 45 H 1.09001 * 109.47578 * 181.45505 * 26 25 24 46 46 H 1.09003 * 109.46933 * 301.45233 * 26 25 24 47 47 H 1.08997 * 109.46961 * 58.54253 * 27 25 24 48 48 H 1.09003 * 109.46792 * 178.54551 * 27 25 24 49 49 H 1.08997 * 109.46833 * 298.54519 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 2.0182 -0.6907 1.1962 6 7 1.2761 -1.2169 2.1068 7 7 2.0305 -1.7394 3.0131 8 6 3.3028 -1.5246 2.6442 9 6 4.5188 -1.9449 3.3757 10 8 5.6181 -1.6842 2.9276 11 7 4.4071 -2.6168 4.5387 12 6 5.6108 -3.0333 5.2625 13 1 6.3920 -2.2782 5.1756 14 6 6.1120 -4.3992 4.7483 15 7 5.5773 -5.4286 5.6516 16 6 5.8077 -6.7749 5.5526 17 1 5.3668 -7.4523 6.2690 18 6 6.6080 -7.2690 4.5317 19 7 7.1450 -6.4435 3.6584 20 14 6.9228 -9.1053 4.3972 21 1 5.6318 -9.8169 4.2173 22 1 7.8015 -9.3727 3.2303 23 1 7.5847 -9.5861 5.6364 24 6 4.7516 -4.7716 6.6810 25 6 5.2872 -3.3200 6.7557 26 6 4.2129 -2.3652 7.2802 27 6 6.5510 -3.2453 7.6150 28 7 3.2579 -0.8613 1.5042 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.6765 -1.7490 -1.2491 36 1 1.6766 -0.2076 -2.1392 37 1 3.1299 -0.7218 -1.2489 38 1 3.5297 -2.8252 4.8962 39 1 7.2017 -4.4234 4.7623 40 1 5.7506 -4.5716 3.7345 41 1 7.7045 -6.7886 2.9451 42 1 3.7027 -4.7741 6.3846 43 1 4.8747 -5.2713 7.6419 44 1 3.9250 -2.6611 8.2889 45 1 4.6072 -1.3492 7.2981 46 1 3.3412 -2.4052 6.6270 47 1 7.3145 -3.9008 7.1961 48 1 6.9204 -2.2199 7.6294 49 1 6.3183 -3.5620 8.6317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974621324.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:51 Heat of formation + Delta-G solvation = 119.215740 kcal Electronic energy + Delta-G solvation = -30296.817153 eV Core-core repulsion = 26298.232936 eV Total energy + Delta-G solvation = -3998.584217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.43440 -39.75409 -38.09477 -37.66281 -33.99512 -33.54237 -33.04936 -32.34447 -30.65399 -28.34473 -28.01762 -27.98456 -26.89787 -25.60552 -25.14973 -24.51693 -23.17278 -21.05088 -20.74346 -19.90364 -18.91571 -17.72737 -17.42636 -16.82693 -16.63697 -15.83696 -14.92720 -14.77043 -14.61106 -14.40732 -14.07334 -14.01836 -13.84725 -13.71925 -13.34003 -13.22045 -12.95756 -12.84009 -12.48163 -12.31368 -12.26676 -12.07746 -11.96297 -11.94057 -11.64031 -11.58330 -11.37409 -11.07932 -11.04521 -11.02295 -10.96623 -10.72555 -10.39255 -10.35554 -10.25804 -9.97409 -9.93189 -9.84390 -9.59649 -8.60982 -8.49768 -6.77597 -5.63971 -2.98511 1.03734 1.55360 1.58121 3.03735 3.39068 3.44616 3.48692 3.50476 3.78810 4.05639 4.13936 4.18990 4.54420 4.59962 4.94019 4.95585 4.95811 4.99672 5.12921 5.17852 5.19167 5.29405 5.32600 5.34669 5.47101 5.58075 5.58640 5.63985 5.66724 5.77045 5.83250 5.96045 6.03864 6.06808 6.18981 6.21488 6.29342 6.41640 6.59809 6.65488 6.68357 6.72044 6.96762 7.55789 7.65141 7.75681 7.89821 8.19690 8.30540 8.42450 9.26930 9.87861 10.53279 11.46774 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.003150 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.452367 B = 8886.092610 C =10072.615965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.177 3.823 3 C -0.160 4.160 4 C -0.162 4.162 5 N -0.129 5.129 6 N -0.059 5.059 7 N -0.257 5.257 8 C 0.135 3.865 9 C 0.612 3.388 10 O -0.508 6.508 11 N -0.684 5.684 12 C 0.124 3.876 13 H 0.092 0.908 14 C 0.175 3.825 15 N -0.602 5.602 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.911 3.089 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.142 3.858 25 C -0.088 4.088 26 C -0.134 4.134 27 C -0.125 4.125 28 N -0.247 5.247 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.406 0.594 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.253 0.747 42 H 0.018 0.982 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.048 0.952 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.992 17.168 -4.769 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 C -0.218 4.218 4 C -0.220 4.220 5 N -0.043 5.043 6 N -0.052 5.052 7 N -0.131 5.131 8 C -0.149 4.149 9 C 0.391 3.609 10 O -0.379 6.379 11 N -0.337 5.337 12 C 0.020 3.980 13 H 0.110 0.890 14 C 0.049 3.951 15 N -0.329 5.329 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.741 3.259 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.016 3.984 25 C -0.089 4.089 26 C -0.192 4.192 27 C -0.183 4.183 28 N -0.100 5.100 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.242 0.758 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.067 0.933 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.648 17.273 -5.376 22.073 hybrid contribution 0.146 -1.240 -0.014 1.249 sum -12.502 16.033 -5.390 21.033 Atomic orbital electron populations 1.22101 0.89901 1.04767 1.04295 1.21478 0.96527 0.92820 0.79525 1.22252 1.03619 0.91904 1.04037 1.22268 1.03695 1.01194 0.94835 1.50716 1.01062 1.34448 1.18104 1.78837 1.21744 1.09046 0.95591 1.76133 1.00265 1.17309 1.19433 1.25509 0.94630 1.01452 0.93304 1.16066 0.84477 0.79234 0.81089 1.90853 1.25079 1.55502 1.66503 1.45771 1.11361 1.55143 1.21383 1.22672 0.85473 0.99407 0.90440 0.89025 1.21542 0.97823 0.82023 0.93680 1.44414 1.56279 1.02698 1.29481 1.18973 1.25435 0.81100 1.10190 0.90503 1.24803 1.00037 0.97772 0.97764 1.69942 1.36813 1.32405 1.17446 0.86221 0.77652 0.84950 0.77044 1.21303 1.21681 1.21207 1.21649 0.93662 0.89823 0.93262 1.22061 0.96494 0.96930 0.93429 1.21706 0.98077 0.98661 1.00725 1.21594 0.96861 1.01135 0.98672 1.74996 1.02449 1.17376 1.15139 0.90542 0.89177 0.90452 0.90151 0.89055 0.91340 0.91191 0.89042 0.90102 0.75753 0.92481 0.93255 0.93667 0.96471 0.93954 0.92424 0.92785 0.92801 0.91184 0.93320 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 7.90 37.16 0.29 -0.58 16 2 C 0.18 1.42 1.30 -131.82 -0.17 1.25 16 3 C -0.16 -1.01 8.65 37.15 0.32 -0.69 16 4 C -0.16 -1.15 8.67 37.16 0.32 -0.82 16 5 N -0.13 -1.66 3.72 0.52 0.00 -1.65 16 6 N -0.06 -0.85 12.21 60.35 0.74 -0.11 16 7 N -0.26 -4.20 12.26 32.10 0.39 -3.80 16 8 C 0.14 2.37 8.14 -156.24 -1.27 1.10 16 9 C 0.61 11.89 7.83 -12.26 -0.10 11.79 16 10 O -0.51 -11.35 16.82 5.33 0.09 -11.26 16 11 N -0.68 -12.44 4.56 -52.77 -0.24 -12.68 16 12 C 0.12 2.41 2.51 -65.94 -0.17 2.25 16 13 H 0.09 1.79 7.60 -51.93 -0.39 1.40 16 14 C 0.17 4.34 4.73 -3.06 -0.01 4.33 16 15 N -0.60 -15.20 3.38 -170.08 -0.58 -15.78 16 16 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 17 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -27.66 10.31 55.49 0.57 -27.09 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.14 2.86 6.13 -2.53 -0.02 2.85 16 25 C -0.09 -1.47 0.84 -152.20 -0.13 -1.60 16 26 C -0.13 -1.80 8.36 37.16 0.31 -1.49 16 27 C -0.13 -1.98 8.61 37.16 0.32 -1.66 16 28 N -0.25 -3.95 11.85 32.11 0.38 -3.57 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.41 6.77 6.60 -40.82 -0.27 6.50 16 39 H 0.06 1.58 7.38 -51.93 -0.38 1.20 16 40 H 0.05 1.42 7.40 -51.93 -0.38 1.03 16 41 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.02 0.35 8.04 -51.93 -0.42 -0.07 16 43 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.71 6.19 -51.93 -0.32 0.39 16 47 H 0.07 1.30 7.82 -51.93 -0.41 0.90 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 396.49 15.07 5.98 5.98 Total: -1.00 -34.20 396.49 -6.27 -40.47 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.04 Total: 2.12 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -0.54 Total: 9.88 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: 1.27 Total: -64.67 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.20 -6.27 -40.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974621324.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.686 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds