Wall clock time and date at job start Tue Mar 31 2020 19:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47418 * 2 1 4 4 C 1.52995 * 109.46780 * 239.99356 * 2 1 3 5 5 N 1.46504 * 109.46591 * 120.00092 * 2 1 3 6 6 N 1.28720 * 125.32496 * 0.02562 * 5 2 1 7 7 N 1.28975 * 108.99066 * 180.02562 * 6 5 2 8 8 C 1.34191 * 107.25389 * 0.02562 * 7 6 5 9 9 C 1.48003 * 126.70117 * 179.97438 * 8 7 6 10 10 O 1.21542 * 119.99916 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99991 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00025 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.63962 * 36.69574 * 12 11 9 14 14 C 1.54321 * 110.72384 * 273.55367 * 12 11 9 15 15 N 1.47026 * 107.26791 * 263.65067 * 14 12 11 16 16 C 1.36940 * 125.64258 * 181.03445 * 15 14 12 17 17 H 1.08003 * 119.99660 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00559 * 0.02875 * 16 15 14 19 19 N 1.31617 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00230 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46531 * 60.00328 * 20 18 16 22 22 H 1.48502 * 109.47014 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47009 * 300.00047 * 20 18 16 24 24 C 1.47419 * 108.70576 * 1.06162 * 15 14 12 25 25 C 1.54905 * 104.92834 * 335.81449 * 24 15 14 26 26 C 1.53000 * 111.00859 * 155.14142 * 25 24 15 27 27 C 1.53007 * 111.00473 * 278.99353 * 25 24 15 28 28 N 1.28873 * 125.31755 * 180.34075 * 5 2 1 29 29 H 1.09001 * 109.47111 * 300.00327 * 1 2 3 30 30 H 1.09000 * 109.46969 * 59.99982 * 1 2 3 31 31 H 1.08998 * 109.47384 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47178 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46787 * 299.99361 * 3 2 1 34 34 H 1.08996 * 109.47646 * 59.99558 * 3 2 1 35 35 H 1.08998 * 109.47665 * 300.00444 * 4 2 1 36 36 H 1.08999 * 109.47309 * 60.00351 * 4 2 1 37 37 H 1.09002 * 109.46960 * 180.02562 * 4 2 1 38 38 H 0.97004 * 119.99985 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.88101 * 144.23586 * 14 12 11 40 40 H 1.08997 * 110.01327 * 23.13953 * 14 12 11 41 41 H 0.97004 * 120.00521 * 179.97438 * 19 18 16 42 42 H 1.09002 * 110.36926 * 94.70918 * 24 15 14 43 43 H 1.08995 * 110.36556 * 216.92202 * 24 15 14 44 44 H 1.09000 * 109.47194 * 61.45060 * 26 25 24 45 45 H 1.09001 * 109.47578 * 181.45505 * 26 25 24 46 46 H 1.09003 * 109.46933 * 301.45233 * 26 25 24 47 47 H 1.08997 * 109.46961 * 58.54253 * 27 25 24 48 48 H 1.09003 * 109.46792 * 178.54551 * 27 25 24 49 49 H 1.08997 * 109.46833 * 298.54519 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 2.0182 -0.6907 1.1962 6 7 1.2761 -1.2169 2.1068 7 7 2.0305 -1.7394 3.0131 8 6 3.3028 -1.5246 2.6442 9 6 4.5188 -1.9449 3.3757 10 8 5.6181 -1.6842 2.9276 11 7 4.4071 -2.6168 4.5387 12 6 5.6108 -3.0333 5.2625 13 1 6.3920 -2.2782 5.1756 14 6 6.1120 -4.3992 4.7483 15 7 5.5773 -5.4286 5.6516 16 6 5.8077 -6.7749 5.5526 17 1 5.3668 -7.4523 6.2690 18 6 6.6080 -7.2690 4.5317 19 7 7.1450 -6.4435 3.6584 20 14 6.9228 -9.1053 4.3972 21 1 5.6318 -9.8169 4.2173 22 1 7.8015 -9.3727 3.2303 23 1 7.5847 -9.5861 5.6364 24 6 4.7516 -4.7716 6.6810 25 6 5.2872 -3.3200 6.7557 26 6 4.2129 -2.3652 7.2802 27 6 6.5510 -3.2453 7.6150 28 7 3.2579 -0.8613 1.5042 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.6765 -1.7490 -1.2491 36 1 1.6766 -0.2076 -2.1392 37 1 3.1299 -0.7218 -1.2489 38 1 3.5297 -2.8252 4.8962 39 1 7.2017 -4.4234 4.7623 40 1 5.7506 -4.5716 3.7345 41 1 7.7045 -6.7886 2.9451 42 1 3.7027 -4.7741 6.3846 43 1 4.8747 -5.2713 7.6419 44 1 3.9250 -2.6611 8.2889 45 1 4.6072 -1.3492 7.2981 46 1 3.3412 -2.4052 6.6270 47 1 7.3145 -3.9008 7.1961 48 1 6.9204 -2.2199 7.6294 49 1 6.3183 -3.5620 8.6317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974621324.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:50 Heat of formation + Delta-G solvation = 94.963004 kcal Electronic energy + Delta-G solvation = -30297.868831 eV Core-core repulsion = 26298.232936 eV Total energy + Delta-G solvation = -3999.635895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.61864 -41.34510 -39.53755 -38.60837 -35.78980 -34.88280 -34.53457 -33.49484 -32.60093 -30.01153 -28.63369 -28.54789 -28.12086 -27.45413 -26.51611 -25.62674 -24.85013 -22.58648 -21.96877 -21.49316 -20.39104 -18.99757 -18.68541 -18.56640 -17.75932 -17.45990 -16.74690 -16.15633 -15.86993 -15.59799 -15.38443 -15.27063 -15.16897 -15.11163 -14.76685 -14.07907 -14.02537 -13.78641 -13.49207 -13.45164 -13.29790 -13.23226 -13.15072 -12.98131 -12.87563 -12.85672 -12.65236 -12.64580 -12.56690 -12.37866 -12.19040 -12.13095 -12.11823 -11.86865 -11.77871 -11.55596 -11.51349 -11.48378 -11.31310 -10.72926 -10.18754 -8.87928 -7.82102 -5.18500 -0.18093 0.23654 0.63223 1.44243 1.48017 1.54289 1.65272 1.89990 2.50101 2.77109 2.94098 3.36100 3.45959 3.47619 3.56163 3.63442 3.71963 3.94610 3.95929 4.06972 4.28376 4.38327 4.40439 4.49951 4.51551 4.57454 4.59956 4.65962 4.72065 4.72539 4.84027 4.90662 4.96195 5.01340 5.01982 5.10194 5.12940 5.17068 5.19090 5.21809 5.24230 5.36419 5.46803 5.57640 5.64190 5.72861 6.18600 6.23530 6.84761 7.02227 7.09631 7.78891 8.43335 9.27115 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.003150 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.452367 B = 8886.092610 C =10072.615965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 C -0.156 4.156 4 C -0.160 4.160 5 N -0.109 5.109 6 N -0.055 5.055 7 N -0.266 5.266 8 C 0.116 3.884 9 C 0.613 3.387 10 O -0.546 6.546 11 N -0.673 5.673 12 C 0.136 3.864 13 H 0.091 0.909 14 C 0.192 3.808 15 N -0.620 5.620 16 C -0.236 4.236 17 H 0.087 0.913 18 C -0.070 4.070 19 N -0.953 5.953 20 Si 0.978 3.022 21 H -0.278 1.278 22 H -0.299 1.299 23 H -0.273 1.273 24 C 0.136 3.864 25 C -0.071 4.071 26 C -0.127 4.127 27 C -0.122 4.122 28 N -0.257 5.257 29 H 0.073 0.927 30 H 0.129 0.871 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.131 0.869 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.133 0.867 37 H 0.059 0.941 38 H 0.415 0.585 39 H 0.015 0.985 40 H -0.001 1.001 41 H 0.243 0.757 42 H 0.027 0.973 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.032 0.968 48 H 0.071 0.929 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.569 18.639 -4.081 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.080 3.920 3 C -0.214 4.214 4 C -0.218 4.218 5 N -0.026 5.026 6 N -0.047 5.047 7 N -0.141 5.141 8 C -0.167 4.167 9 C 0.394 3.606 10 O -0.420 6.420 11 N -0.325 5.325 12 C 0.031 3.969 13 H 0.109 0.891 14 C 0.066 3.934 15 N -0.346 5.346 16 C -0.365 4.365 17 H 0.105 0.895 18 C -0.263 4.263 19 N -0.602 5.602 20 Si 0.806 3.194 21 H -0.204 1.204 22 H -0.226 1.226 23 H -0.199 1.199 24 C 0.011 3.989 25 C -0.073 4.073 26 C -0.185 4.185 27 C -0.180 4.180 28 N -0.111 5.111 29 H 0.092 0.908 30 H 0.147 0.853 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.151 0.849 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.033 0.967 40 H 0.017 0.983 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.294 18.749 -4.634 24.635 hybrid contribution 0.851 -1.643 -0.328 1.879 sum -14.442 17.106 -4.961 22.931 Atomic orbital electron populations 1.22181 0.87639 1.04720 1.06112 1.22264 0.98275 0.93500 0.78011 1.22302 1.02466 0.90756 1.05889 1.22328 1.02415 1.01094 0.95968 1.51356 0.99949 1.32842 1.18454 1.78756 1.21407 1.08958 0.95630 1.76089 0.99690 1.17934 1.20350 1.25060 0.94360 1.03146 0.94154 1.16300 0.84701 0.78636 0.81010 1.90823 1.26742 1.57056 1.67400 1.45611 1.11332 1.54525 1.21073 1.22380 0.86095 0.96062 0.92395 0.89122 1.21105 0.95383 0.85225 0.91720 1.44665 1.56831 1.02297 1.30798 1.19437 1.24525 0.82728 1.09837 0.89496 1.25676 1.00573 1.02141 0.97881 1.70217 1.37837 1.34113 1.18064 0.85157 0.77490 0.79843 0.76882 1.20416 1.22597 1.19896 1.21912 0.93286 0.91545 0.92158 1.22044 0.98171 0.95605 0.91441 1.21687 0.96605 0.98322 1.01869 1.21589 0.95250 1.01880 0.99247 1.74957 1.04139 1.17336 1.14712 0.90804 0.85257 0.91413 0.91998 0.85073 0.91585 0.92343 0.84918 0.92146 0.74639 0.96661 0.98281 0.94776 0.95569 0.92858 0.89930 0.91169 0.92526 0.94862 0.90962 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 7.90 71.98 0.57 -0.72 16 2 C 0.16 2.24 1.30 3.60 0.00 2.25 16 3 C -0.16 -1.62 8.65 71.98 0.62 -1.00 16 4 C -0.16 -2.01 8.67 71.98 0.62 -1.38 16 5 N -0.11 -2.75 3.72 -152.26 -0.57 -3.32 16 6 N -0.06 -1.54 12.21 37.02 0.45 -1.09 16 7 N -0.27 -8.69 12.26 -52.36 -0.64 -9.33 16 8 C 0.12 4.17 8.14 137.15 1.12 5.28 16 9 C 0.61 24.72 7.83 86.83 0.68 25.40 16 10 O -0.55 -25.71 16.82 -3.85 -0.06 -25.78 16 11 N -0.67 -24.92 4.56 -439.15 -2.00 -26.92 16 12 C 0.14 5.40 2.51 46.28 0.12 5.52 16 13 H 0.09 3.66 7.60 -2.39 -0.02 3.64 16 14 C 0.19 10.12 4.73 86.73 0.41 10.53 16 15 N -0.62 -32.14 3.38 -692.01 -2.34 -34.48 16 16 C -0.24 -13.45 10.28 84.03 0.86 -12.59 16 17 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 18 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 19 N -0.95 -60.66 10.31 21.65 0.22 -60.44 16 20 Si 0.98 47.46 29.55 68.60 2.03 49.48 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 24 C 0.14 5.34 6.13 86.85 0.53 5.87 16 25 C -0.07 -2.30 0.84 -50.69 -0.04 -2.34 16 26 C -0.13 -2.98 8.36 71.98 0.60 -2.38 16 27 C -0.12 -3.68 8.61 71.98 0.62 -3.06 16 28 N -0.26 -8.37 11.85 -52.31 -0.62 -8.99 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.41 13.73 6.60 -92.71 -0.61 13.11 16 39 H 0.02 0.92 7.38 -2.39 -0.02 0.90 16 40 H 0.00 -0.06 7.40 -2.39 -0.02 -0.08 16 41 H 0.24 15.26 8.31 -92.70 -0.77 14.48 16 42 H 0.03 1.01 8.04 -2.39 -0.02 0.99 16 43 H 0.05 1.99 8.05 -2.39 -0.02 1.97 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.06 1.31 6.19 -2.39 -0.01 1.30 16 47 H 0.03 1.24 7.82 -2.39 -0.02 1.22 16 48 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -80.57 396.49 3.99 -76.58 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.34 Total: 16.57 kcal Atomic # 6 Polarization: 20.53 SS G_CDS: 7.18 Total: 27.72 kcal Atomic # 7 Polarization: -139.07 SS G_CDS: -5.49 Total: -144.56 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.78 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.48 kcal Total: -80.57 3.99 -76.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974621324.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.542 kcal (2) G-P(sol) polarization free energy of solvation -80.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds