Wall clock time and date at job start Tue Mar 31 2020 19:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47664 * 2 1 4 4 C 1.50696 * 109.46917 * 120.00581 * 2 1 3 5 5 N 1.31076 * 126.65921 * 300.01737 * 4 2 1 6 6 N 1.28844 * 107.99078 * 179.97438 * 5 4 2 7 7 N 1.28735 * 109.39970 * 0.02562 * 6 5 4 8 8 N 1.29020 * 108.80643 * 359.97438 * 7 6 5 9 9 C 1.46499 * 126.43911 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47489 * 89.97029 * 9 8 7 11 11 O 1.21281 * 119.99963 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00232 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00183 * 180.02562 * 12 10 9 14 14 H 1.08997 * 110.63742 * 31.86496 * 13 12 10 15 15 C 1.54314 * 110.71966 * 268.52617 * 13 12 10 16 16 N 1.47024 * 107.27192 * 263.82761 * 15 13 12 17 17 C 1.36940 * 125.65022 * 181.10450 * 16 15 13 18 18 H 1.07997 * 119.99634 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00037 * 359.95198 * 17 16 15 20 20 N 1.31625 * 119.99921 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00177 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46992 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47218 * 119.99571 * 21 19 17 24 24 H 1.48497 * 109.47122 * 239.99625 * 21 19 17 25 25 C 1.47425 * 108.70066 * 1.05900 * 16 15 13 26 26 C 1.54905 * 104.83267 * 335.87246 * 25 16 15 27 27 C 1.52996 * 111.00650 * 278.93171 * 26 25 16 28 28 C 1.53003 * 111.00071 * 155.08191 * 26 25 16 29 29 H 1.09002 * 109.46627 * 59.99727 * 1 2 3 30 30 H 1.08998 * 109.47709 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46788 * 299.99943 * 1 2 3 32 32 H 1.09007 * 109.46799 * 240.00046 * 2 1 3 33 33 H 1.08995 * 109.47090 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47109 * 300.00584 * 3 2 1 35 35 H 1.09007 * 109.46518 * 59.99877 * 3 2 1 36 36 H 1.09000 * 109.47699 * 209.97736 * 9 8 7 37 37 H 1.09011 * 109.47015 * 329.97341 * 9 8 7 38 38 H 0.97003 * 119.99636 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.88887 * 23.24587 * 15 13 12 40 40 H 1.08996 * 109.88290 * 144.41487 * 15 13 12 41 41 H 0.97004 * 119.99716 * 179.97438 * 20 19 17 42 42 H 1.09006 * 110.36837 * 217.02909 * 25 16 15 43 43 H 1.09005 * 110.45835 * 94.76113 * 25 16 15 44 44 H 1.08997 * 109.47830 * 172.19850 * 27 26 25 45 45 H 1.08999 * 109.47403 * 292.19959 * 27 26 25 46 46 H 1.09005 * 109.46985 * 52.19367 * 27 26 25 47 47 H 1.09001 * 109.47352 * 307.80232 * 28 26 25 48 48 H 1.09000 * 109.46974 * 67.80726 * 28 26 25 49 49 H 1.09001 * 109.47022 * 187.80165 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7972 -0.3788 2.4765 6 7 2.3981 -1.2294 3.2349 7 7 3.0109 -2.0950 2.5051 8 7 2.8092 -1.8091 1.2632 9 6 3.3282 -2.5427 0.1061 10 6 2.3463 -3.6149 -0.2906 11 8 1.3144 -3.7524 0.3316 12 7 2.6144 -4.4202 -1.3375 13 6 1.6597 -5.4622 -1.7236 14 1 0.6387 -5.1460 -1.5097 15 6 1.9845 -6.7916 -1.0105 16 7 2.7884 -7.5999 -1.9390 17 6 3.2629 -8.8609 -1.6942 18 1 3.8465 -9.3733 -2.4446 19 6 2.9942 -9.4803 -0.4814 20 7 2.2837 -8.8553 0.4336 21 14 3.6409 -11.2007 -0.1477 22 1 4.4046 -11.6799 -1.3276 23 1 4.5310 -11.1731 1.0407 24 1 2.5008 -12.1169 0.1090 25 6 2.9980 -6.8284 -3.1776 26 6 1.8192 -5.8244 -3.2238 27 6 0.5525 -6.4903 -3.7649 28 6 2.1829 -4.5894 -4.0505 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 3.1301 1.4423 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 3.4704 -1.8540 -0.7268 37 1 4.2824 -3.0017 0.3650 38 1 3.4396 -4.3099 -1.8354 39 1 2.5534 -6.5955 -0.1016 40 1 1.0610 -7.3165 -0.7663 41 1 2.0956 -9.2883 1.2810 42 1 2.9688 -7.4879 -4.0450 43 1 3.9484 -6.2961 -3.1387 44 1 -0.2908 -5.8080 -3.6580 45 1 0.6916 -6.7337 -4.8182 46 1 0.3543 -7.4037 -3.2041 47 1 3.1238 -4.1744 -3.6892 48 1 2.2886 -4.8716 -5.0980 49 1 1.3952 -3.8423 -3.9533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977283294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:27 Heat of formation + Delta-G solvation = 103.161660 kcal Electronic energy + Delta-G solvation = -30632.453427 eV Core-core repulsion = 26633.173052 eV Total energy + Delta-G solvation = -3999.280374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.19225 -40.12330 -38.28202 -36.37010 -35.37162 -34.08986 -33.27087 -31.53103 -30.80121 -29.62470 -27.92229 -27.52228 -26.83571 -25.73340 -24.51069 -23.92105 -23.06923 -21.23500 -20.62707 -20.16489 -19.04679 -17.89439 -17.69072 -16.79968 -16.28812 -16.02680 -15.72857 -15.36507 -14.84021 -14.58955 -14.18690 -14.02673 -13.86351 -13.55925 -13.52818 -13.34566 -12.89118 -12.71448 -12.51453 -12.27745 -12.11037 -12.07621 -11.91332 -11.80480 -11.64963 -11.51589 -11.45222 -11.32165 -11.20440 -11.07929 -11.01191 -10.84842 -10.53769 -10.38940 -10.16207 -10.07701 -9.96479 -9.80193 -9.73177 -8.79352 -8.66553 -6.91632 -5.76153 -3.11723 1.17475 1.76894 2.27585 2.45082 3.11239 3.36705 3.41650 3.45155 3.70624 4.00464 4.23986 4.42361 4.46503 4.57087 4.65330 4.78522 4.78831 4.96675 5.12351 5.15503 5.29408 5.34701 5.43211 5.46153 5.49823 5.53261 5.57430 5.65020 5.70357 5.77687 5.86390 5.86833 5.97889 6.02123 6.03492 6.04521 6.08344 6.23974 6.38873 6.45619 6.51564 6.55391 6.79714 7.37339 7.50071 7.56396 7.76061 8.13202 8.19043 8.63528 9.14496 9.75433 10.39182 11.34534 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.003336 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.320899 B = 8391.328546 C = 9750.826251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.009 4.009 3 C -0.143 4.143 4 C 0.198 3.802 5 N -0.302 5.302 6 N -0.076 5.076 7 N -0.079 5.079 8 N -0.291 5.291 9 C 0.090 3.910 10 C 0.499 3.501 11 O -0.519 6.519 12 N -0.698 5.698 13 C 0.124 3.876 14 H 0.091 0.909 15 C 0.175 3.825 16 N -0.602 5.602 17 C -0.233 4.233 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.917 5.917 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.143 3.857 26 C -0.089 4.089 27 C -0.126 4.126 28 C -0.131 4.131 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.399 0.601 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.253 0.747 42 H 0.042 0.958 43 H 0.015 0.985 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.056 0.944 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 19.090 -10.177 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 C -0.201 4.201 4 C -0.080 4.080 5 N -0.151 5.151 6 N -0.070 5.070 7 N -0.065 5.065 8 N -0.091 5.091 9 C -0.036 4.036 10 C 0.281 3.719 11 O -0.394 6.394 12 N -0.349 5.349 13 C 0.020 3.980 14 H 0.109 0.891 15 C 0.049 3.951 16 N -0.329 5.329 17 C -0.361 4.361 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.741 3.259 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.017 3.983 26 C -0.091 4.091 27 C -0.184 4.184 28 C -0.188 4.188 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.234 0.766 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.033 0.967 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.137 18.630 -8.093 20.312 hybrid contribution 0.888 -1.183 -0.881 1.722 sum 1.025 17.447 -8.974 19.646 Atomic orbital electron populations 1.21827 0.91774 1.03392 1.03236 1.19763 0.97865 0.95869 0.89620 1.21847 1.01160 0.93524 1.03606 1.26027 0.94992 0.89029 0.97945 1.74914 1.19849 1.21997 0.98337 1.78603 1.07071 0.98884 1.22428 1.78954 1.19997 1.20307 0.87193 1.47853 1.34520 1.19834 1.06898 1.22035 0.99691 0.95735 0.86115 1.20105 0.87402 0.82848 0.81555 1.90826 1.26207 1.70576 1.51756 1.45880 1.23904 1.33943 1.31220 1.22593 0.92192 0.88886 0.94344 0.89077 1.21525 0.96401 0.85532 0.91631 1.44434 1.61688 1.14585 1.12157 1.19049 1.27672 0.89678 0.99708 0.90365 1.24821 1.00225 0.98644 0.96530 1.69954 1.42677 1.36842 1.06956 0.86070 0.78042 0.83978 0.77779 1.20532 1.21744 1.21722 1.21636 0.93297 0.92362 0.91012 1.22035 0.97874 0.95837 0.93326 1.21602 0.95202 1.01131 1.00479 1.21681 1.00591 0.96965 0.99610 0.91009 0.91735 0.91102 0.89194 0.92425 0.90867 0.90963 0.84630 0.83959 0.76589 0.93327 0.92666 0.93620 0.93991 0.96716 0.93316 0.92737 0.91138 0.93106 0.92485 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -0.91 9.18 37.15 0.34 -0.57 16 4 C 0.20 2.53 6.64 -155.43 -1.03 1.50 16 5 N -0.30 -4.75 12.36 32.70 0.40 -4.35 16 6 N -0.08 -1.36 13.43 60.35 0.81 -0.55 16 7 N -0.08 -1.35 13.29 60.35 0.80 -0.55 16 8 N -0.29 -3.94 2.83 -59.44 -0.17 -4.10 16 9 C 0.09 0.88 6.57 -5.19 -0.03 0.85 16 10 C 0.50 7.03 7.90 -10.99 -0.09 6.94 16 11 O -0.52 -9.98 16.07 5.56 0.09 -9.89 16 12 N -0.70 -9.31 4.45 -52.04 -0.23 -9.54 16 13 C 0.12 2.09 2.59 -66.10 -0.17 1.92 16 14 H 0.09 1.63 7.45 -51.93 -0.39 1.24 16 15 C 0.17 4.03 4.79 -3.07 -0.01 4.01 16 16 N -0.60 -14.10 3.38 -170.08 -0.57 -14.68 16 17 C -0.23 -6.19 10.28 -15.06 -0.15 -6.34 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 20 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16 21 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C 0.14 2.56 6.12 -2.53 -0.02 2.54 16 26 C -0.09 -1.29 0.83 -152.36 -0.13 -1.41 16 27 C -0.13 -1.82 8.57 37.16 0.32 -1.50 16 28 C -0.13 -1.34 8.22 37.16 0.31 -1.04 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.55 6.85 -51.93 -0.36 0.20 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.14 0.62 7.13 -51.93 -0.37 0.25 16 37 H 0.14 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.40 4.14 7.11 -40.82 -0.29 3.85 16 39 H 0.05 1.31 7.41 -51.93 -0.38 0.92 16 40 H 0.06 1.48 7.38 -51.93 -0.38 1.09 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.04 0.75 8.05 -51.93 -0.42 0.33 16 43 H 0.02 0.26 7.98 -51.93 -0.41 -0.16 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 47 H 0.05 0.44 6.48 -51.93 -0.34 0.10 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 396.07 15.07 5.97 5.97 Total: -1.00 -36.05 396.07 -6.02 -42.07 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.95 Total: -0.29 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.73 Total: 5.36 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 1.61 Total: -60.05 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.05 -6.02 -42.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977283294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.233 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds