Wall clock time and date at job start Tue Mar 31 2020 19:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47664 * 2 1 4 4 C 1.50696 * 109.46917 * 120.00581 * 2 1 3 5 5 N 1.31076 * 126.65921 * 300.01737 * 4 2 1 6 6 N 1.28844 * 107.99078 * 179.97438 * 5 4 2 7 7 N 1.28735 * 109.39970 * 0.02562 * 6 5 4 8 8 N 1.29020 * 108.80643 * 359.97438 * 7 6 5 9 9 C 1.46499 * 126.43911 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47489 * 89.97029 * 9 8 7 11 11 O 1.21281 * 119.99963 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00232 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00183 * 180.02562 * 12 10 9 14 14 H 1.08997 * 110.63742 * 31.86496 * 13 12 10 15 15 C 1.54314 * 110.71966 * 268.52617 * 13 12 10 16 16 N 1.47024 * 107.27192 * 263.82761 * 15 13 12 17 17 C 1.36940 * 125.65022 * 181.10450 * 16 15 13 18 18 H 1.07997 * 119.99634 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00037 * 359.95198 * 17 16 15 20 20 N 1.31625 * 119.99921 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00177 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46992 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47218 * 119.99571 * 21 19 17 24 24 H 1.48497 * 109.47122 * 239.99625 * 21 19 17 25 25 C 1.47425 * 108.70066 * 1.05900 * 16 15 13 26 26 C 1.54905 * 104.83267 * 335.87246 * 25 16 15 27 27 C 1.52996 * 111.00650 * 278.93171 * 26 25 16 28 28 C 1.53003 * 111.00071 * 155.08191 * 26 25 16 29 29 H 1.09002 * 109.46627 * 59.99727 * 1 2 3 30 30 H 1.08998 * 109.47709 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46788 * 299.99943 * 1 2 3 32 32 H 1.09007 * 109.46799 * 240.00046 * 2 1 3 33 33 H 1.08995 * 109.47090 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47109 * 300.00584 * 3 2 1 35 35 H 1.09007 * 109.46518 * 59.99877 * 3 2 1 36 36 H 1.09000 * 109.47699 * 209.97736 * 9 8 7 37 37 H 1.09011 * 109.47015 * 329.97341 * 9 8 7 38 38 H 0.97003 * 119.99636 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.88887 * 23.24587 * 15 13 12 40 40 H 1.08996 * 109.88290 * 144.41487 * 15 13 12 41 41 H 0.97004 * 119.99716 * 179.97438 * 20 19 17 42 42 H 1.09006 * 110.36837 * 217.02909 * 25 16 15 43 43 H 1.09005 * 110.45835 * 94.76113 * 25 16 15 44 44 H 1.08997 * 109.47830 * 172.19850 * 27 26 25 45 45 H 1.08999 * 109.47403 * 292.19959 * 27 26 25 46 46 H 1.09005 * 109.46985 * 52.19367 * 27 26 25 47 47 H 1.09001 * 109.47352 * 307.80232 * 28 26 25 48 48 H 1.09000 * 109.46974 * 67.80726 * 28 26 25 49 49 H 1.09001 * 109.47022 * 187.80165 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7972 -0.3788 2.4765 6 7 2.3981 -1.2294 3.2349 7 7 3.0109 -2.0950 2.5051 8 7 2.8092 -1.8091 1.2632 9 6 3.3282 -2.5427 0.1061 10 6 2.3463 -3.6149 -0.2906 11 8 1.3144 -3.7524 0.3316 12 7 2.6144 -4.4202 -1.3375 13 6 1.6597 -5.4622 -1.7236 14 1 0.6387 -5.1460 -1.5097 15 6 1.9845 -6.7916 -1.0105 16 7 2.7884 -7.5999 -1.9390 17 6 3.2629 -8.8609 -1.6942 18 1 3.8465 -9.3733 -2.4446 19 6 2.9942 -9.4803 -0.4814 20 7 2.2837 -8.8553 0.4336 21 14 3.6409 -11.2007 -0.1477 22 1 4.4046 -11.6799 -1.3276 23 1 4.5310 -11.1731 1.0407 24 1 2.5008 -12.1169 0.1090 25 6 2.9980 -6.8284 -3.1776 26 6 1.8192 -5.8244 -3.2238 27 6 0.5525 -6.4903 -3.7649 28 6 2.1829 -4.5894 -4.0505 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 3.1301 1.4423 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 3.4704 -1.8540 -0.7268 37 1 4.2824 -3.0017 0.3650 38 1 3.4396 -4.3099 -1.8354 39 1 2.5534 -6.5955 -0.1016 40 1 1.0610 -7.3165 -0.7663 41 1 2.0956 -9.2883 1.2810 42 1 2.9688 -7.4879 -4.0450 43 1 3.9484 -6.2961 -3.1387 44 1 -0.2908 -5.8080 -3.6580 45 1 0.6916 -6.7337 -4.8182 46 1 0.3543 -7.4037 -3.2041 47 1 3.1238 -4.1744 -3.6892 48 1 2.2886 -4.8716 -5.0980 49 1 1.3952 -3.8423 -3.9533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977283294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:26 Heat of formation + Delta-G solvation = 76.274955 kcal Electronic energy + Delta-G solvation = -30633.619322 eV Core-core repulsion = 26633.173052 eV Total energy + Delta-G solvation = -4000.446269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.29073 -41.39754 -39.64463 -37.14355 -36.42569 -35.74880 -34.64101 -32.61191 -32.55347 -30.80437 -29.29243 -28.08291 -27.98030 -27.37237 -25.46991 -25.36861 -24.33614 -22.51088 -21.80101 -21.46269 -20.28984 -18.95502 -18.82697 -18.63386 -17.46099 -17.18749 -16.82555 -16.64804 -16.20700 -15.69439 -15.50366 -15.38973 -15.21152 -14.76325 -14.49668 -14.17142 -14.06598 -13.80073 -13.73609 -13.44322 -13.21520 -13.14739 -13.06699 -12.95431 -12.83200 -12.73617 -12.68799 -12.56498 -12.46857 -12.27707 -12.26135 -12.08878 -11.87943 -11.86765 -11.74273 -11.54309 -11.30855 -11.21592 -10.96344 -10.76296 -10.11589 -8.89977 -7.86146 -5.21832 0.10208 0.85578 1.13891 1.35111 1.42848 1.43145 1.53649 2.03572 2.47310 2.89857 3.16750 3.33254 3.40819 3.51182 3.62639 3.73943 3.88811 3.96419 4.04692 4.07951 4.09459 4.20400 4.39475 4.40991 4.51357 4.65493 4.68226 4.80290 4.86145 4.87629 4.91437 4.93869 4.97006 4.99467 5.05038 5.15061 5.17395 5.19473 5.28963 5.31249 5.39169 5.39840 5.46236 5.59671 5.66653 5.72395 6.16125 6.39336 7.04943 7.09870 7.48828 7.77643 8.40081 9.22866 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.003336 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.320899 B = 8391.328546 C = 9750.826251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 C -0.138 4.138 4 C 0.209 3.791 5 N -0.329 5.329 6 N -0.109 5.109 7 N -0.111 5.111 8 N -0.291 5.291 9 C 0.090 3.910 10 C 0.498 3.502 11 O -0.577 6.577 12 N -0.683 5.683 13 C 0.141 3.859 14 H 0.078 0.922 15 C 0.191 3.809 16 N -0.620 5.620 17 C -0.230 4.230 18 H 0.089 0.911 19 C -0.071 4.071 20 N -0.954 5.954 21 Si 0.973 3.027 22 H -0.258 1.258 23 H -0.298 1.298 24 H -0.298 1.298 25 C 0.136 3.864 26 C -0.072 4.072 27 C -0.126 4.126 28 C -0.124 4.124 29 H 0.105 0.895 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.204 0.796 37 H 0.164 0.836 38 H 0.419 0.581 39 H -0.001 1.001 40 H -0.001 1.001 41 H 0.241 0.759 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.024 0.976 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 21.604 -14.652 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.196 4.196 4 C -0.069 4.069 5 N -0.178 5.178 6 N -0.103 5.103 7 N -0.097 5.097 8 N -0.092 5.092 9 C -0.033 4.033 10 C 0.283 3.717 11 O -0.456 6.456 12 N -0.335 5.335 13 C 0.035 3.965 14 H 0.096 0.904 15 C 0.064 3.936 16 N -0.346 5.346 17 C -0.360 4.360 18 H 0.107 0.893 19 C -0.263 4.263 20 N -0.604 5.604 21 Si 0.802 3.198 22 H -0.182 1.182 23 H -0.225 1.225 24 H -0.226 1.226 25 C 0.011 3.989 26 C -0.074 4.074 27 C -0.184 4.184 28 C -0.181 4.181 29 H 0.124 0.876 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.220 0.780 37 H 0.182 0.818 38 H 0.258 0.742 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.043 0.957 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.014 21.166 -12.653 24.741 hybrid contribution 0.279 -1.986 0.419 2.049 sum 2.293 19.180 -12.234 22.865 Atomic orbital electron populations 1.21826 0.92255 1.01752 1.04204 1.20171 0.97347 0.97103 0.88566 1.21849 1.01678 0.91858 1.04222 1.26921 0.93191 0.88288 0.98456 1.74824 1.20653 1.22506 0.99846 1.78553 1.08170 0.99792 1.23743 1.78851 1.21022 1.20865 0.88958 1.48097 1.34412 1.20030 1.06615 1.22504 0.98223 0.95776 0.86834 1.20862 0.87233 0.83232 0.80402 1.90823 1.29092 1.72295 1.53413 1.45597 1.24029 1.32540 1.31362 1.22063 0.92383 0.86479 0.95565 0.90363 1.21083 0.93040 0.88448 0.91006 1.44684 1.61256 1.14322 1.14375 1.19502 1.26114 0.91005 0.99346 0.89348 1.25636 1.01445 1.02343 0.96901 1.70235 1.44959 1.38183 1.07010 0.85080 0.77085 0.79822 0.77818 1.18226 1.22541 1.22573 1.21962 0.95685 0.92814 0.88405 1.21999 0.96389 0.97037 0.91960 1.21612 0.96089 0.99550 1.01129 1.21674 1.02286 0.94558 0.99600 0.87590 0.94580 0.92650 0.85631 0.91570 0.87837 0.92786 0.77963 0.81827 0.74219 0.98260 0.98285 0.95018 0.93602 0.94163 0.91617 0.90296 0.95681 0.90744 0.90621 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.18 71.98 0.66 -1.53 16 2 C -0.01 -0.14 3.26 -11.54 -0.04 -0.18 16 3 C -0.14 -1.23 9.18 71.98 0.66 -0.57 16 4 C 0.21 5.07 6.64 138.13 0.92 5.99 16 5 N -0.33 -10.53 12.36 -50.45 -0.62 -11.16 16 6 N -0.11 -4.03 13.43 37.01 0.50 -3.53 16 7 N -0.11 -3.86 13.29 37.02 0.49 -3.37 16 8 N -0.29 -7.49 2.83 -341.97 -0.97 -8.46 16 9 C 0.09 1.45 6.57 85.63 0.56 2.01 16 10 C 0.50 13.24 7.90 87.66 0.69 13.93 16 11 O -0.58 -22.70 16.07 -3.03 -0.05 -22.75 16 12 N -0.68 -16.58 4.45 -436.94 -1.95 -18.53 16 13 C 0.14 4.70 2.59 46.17 0.12 4.82 16 14 H 0.08 2.86 7.45 -2.39 -0.02 2.84 16 15 C 0.19 9.28 4.79 86.73 0.42 9.70 16 16 N -0.62 -29.47 3.38 -692.00 -2.34 -31.81 16 17 C -0.23 -12.42 10.28 84.03 0.86 -11.55 16 18 H 0.09 4.48 7.83 -2.91 -0.02 4.46 16 19 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 20 N -0.95 -59.58 10.31 21.65 0.22 -59.36 16 21 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 C 0.14 4.52 6.12 86.85 0.53 5.05 16 26 C -0.07 -1.89 0.83 -50.79 -0.04 -1.93 16 27 C -0.13 -3.43 8.57 71.98 0.62 -2.81 16 28 C -0.12 -1.81 8.22 71.98 0.59 -1.22 16 29 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.13 0.80 6.85 -2.38 -0.02 0.78 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.20 0.45 7.13 -2.39 -0.02 0.44 16 37 H 0.16 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.42 6.78 7.11 -92.71 -0.66 6.12 16 39 H 0.00 -0.05 7.41 -2.38 -0.02 -0.06 16 40 H 0.00 -0.06 7.38 -2.39 -0.02 -0.08 16 41 H 0.24 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.05 1.51 8.05 -2.38 -0.02 1.49 16 43 H 0.04 1.18 7.98 -2.38 -0.02 1.17 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.02 0.89 7.91 -2.38 -0.02 0.87 16 47 H 0.07 0.77 6.48 -2.39 -0.02 0.75 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -90.98 396.07 4.63 -86.35 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.30 Total: 6.18 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 7.02 Total: 18.13 kcal Atomic # 7 Polarization: -131.55 SS G_CDS: -4.67 Total: -136.22 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -90.98 4.63 -86.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977283294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.625 kcal (2) G-P(sol) polarization free energy of solvation -90.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds