Wall clock time and date at job start Tue Mar 31 2020 20:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47270 * 2 1 4 4 C 1.52994 * 109.47076 * 239.99961 * 2 1 3 5 5 N 1.46504 * 109.46986 * 120.00143 * 2 1 3 6 6 N 1.28723 * 125.32197 * 0.02562 * 5 2 1 7 7 N 1.28979 * 108.98756 * 179.97438 * 6 5 2 8 8 C 1.34183 * 107.25322 * 359.97438 * 7 6 5 9 9 C 1.48009 * 126.69900 * 179.97438 * 8 7 6 10 10 O 1.21533 * 120.00192 * 180.02562 * 9 8 7 11 11 N 1.34781 * 119.99866 * 0.03640 * 9 8 7 12 12 C 1.46499 * 119.99874 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.47397 * 34.99792 * 12 11 9 14 14 C 1.53000 * 109.46840 * 274.99457 * 12 11 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 19 19 N 1.46496 * 109.46832 * 299.99302 * 17 16 15 20 20 C 1.36939 * 120.00484 * 275.00002 * 19 17 16 21 21 H 1.08005 * 119.99602 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00359 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00130 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47183 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47030 * 120.00412 * 24 22 20 27 27 H 1.48496 * 109.47318 * 240.00302 * 24 22 20 28 28 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 29 29 N 1.28870 * 125.31782 * 180.25398 * 5 2 1 30 30 H 1.09009 * 109.46975 * 300.00182 * 1 2 3 31 31 H 1.09003 * 109.47133 * 59.99581 * 1 2 3 32 32 H 1.08992 * 109.47450 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46878 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47264 * 299.99856 * 3 2 1 35 35 H 1.09004 * 109.47122 * 60.00457 * 3 2 1 36 36 H 1.08998 * 109.47378 * 299.99937 * 4 2 1 37 37 H 1.09004 * 109.47506 * 60.00265 * 4 2 1 38 38 H 1.09005 * 109.47596 * 180.02562 * 4 2 1 39 39 H 0.97002 * 119.99716 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.47398 * 300.00326 * 14 12 11 41 41 H 1.09001 * 109.47194 * 60.00507 * 14 12 11 42 42 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 43 43 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 44 44 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 45 45 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 46 46 H 0.97001 * 119.99753 * 94.99745 * 19 17 16 47 47 H 0.97000 * 120.00591 * 179.97438 * 23 22 20 48 48 H 1.08993 * 109.47194 * 179.97438 * 28 17 16 49 49 H 1.09002 * 109.46695 * 59.99734 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1962 6 7 1.2762 -1.2170 2.1068 7 7 2.0307 -1.7403 3.0125 8 6 3.3028 -1.5272 2.6426 9 6 4.5189 -1.9490 3.3732 10 8 5.6182 -1.6896 2.9244 11 7 4.4073 -2.6209 4.5363 12 6 5.6110 -3.0389 5.2592 13 1 6.3895 -2.2864 5.1344 14 6 6.1012 -4.3771 4.7025 15 6 7.3579 -4.8140 5.4579 16 6 7.0315 -4.9689 6.9446 17 6 6.5411 -3.6307 7.5012 18 1 6.3081 -3.7413 8.5603 19 7 7.5877 -2.6194 7.3340 20 6 8.5780 -2.4972 8.2719 21 1 8.5875 -3.1467 9.1348 22 6 9.5699 -1.5393 8.1132 23 7 9.5585 -0.7481 7.0614 24 14 10.9211 -1.3731 9.3923 25 1 10.7089 -2.3731 10.4694 26 1 12.2403 -1.6080 8.7522 27 1 10.8886 -0.0063 9.9720 28 6 5.2844 -3.1938 6.7459 29 7 3.2580 -0.8626 1.5033 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8901 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 3.5299 -2.8277 4.8946 40 1 5.3226 -5.1297 4.8273 41 1 6.3335 -4.2668 3.6433 42 1 7.7075 -5.7671 5.0611 43 1 8.1367 -4.0615 5.3335 44 1 7.9269 -5.2797 7.4828 45 1 6.2527 -5.7214 7.0690 46 1 7.5793 -2.0364 6.5588 47 1 10.2515 -0.0784 6.9506 48 1 4.9348 -2.2408 7.1427 49 1 4.5057 -3.9464 6.8703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981102039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:13 Heat of formation + Delta-G solvation = 91.466963 kcal Electronic energy + Delta-G solvation = -29541.097007 eV Core-core repulsion = 25541.309513 eV Total energy + Delta-G solvation = -3999.787494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.60327 -39.85866 -38.17404 -37.79201 -34.59018 -33.68919 -33.10940 -32.53853 -30.89878 -29.35639 -28.19534 -28.11158 -27.98209 -25.40532 -24.67304 -23.60578 -21.97165 -21.81864 -21.10144 -20.47906 -18.87474 -17.81759 -17.58593 -17.24810 -16.93829 -15.93224 -15.06724 -14.94783 -14.71278 -14.57883 -14.48026 -14.20267 -13.90828 -13.62198 -13.54421 -13.44441 -13.08443 -13.04408 -12.93924 -12.44566 -12.40870 -12.35839 -12.07200 -12.01043 -11.72728 -11.70033 -11.36098 -11.23719 -11.18651 -10.88043 -10.81220 -10.69608 -10.53124 -10.35733 -10.15236 -10.05142 -10.03324 -9.60080 -9.47249 -8.92591 -8.75406 -6.88896 -5.69187 -2.98318 0.87389 1.36041 1.43074 2.82457 3.15449 3.47595 3.52988 3.55454 3.65652 3.94731 3.95007 4.06368 4.42223 4.64709 4.84077 4.87061 4.89002 5.03584 5.06766 5.08942 5.09375 5.17734 5.24867 5.35049 5.46620 5.52440 5.53728 5.64169 5.64871 5.74548 5.76574 5.87493 5.89086 5.94294 6.11822 6.14828 6.23230 6.36895 6.47833 6.64044 6.66873 6.83468 6.89164 7.05980 7.15476 7.48122 7.77069 8.01112 8.18647 8.48635 9.59775 10.17498 10.51612 11.53040 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018616 B = 0.002393 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.721868 B =11699.335720 C =12453.907259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.126 5.126 6 N -0.058 5.058 7 N -0.258 5.258 8 C 0.131 3.869 9 C 0.611 3.389 10 O -0.499 6.499 11 N -0.700 5.700 12 C 0.147 3.853 13 H 0.103 0.897 14 C -0.122 4.122 15 C -0.109 4.109 16 C -0.136 4.136 17 C 0.179 3.821 18 H 0.053 0.947 19 N -0.722 5.722 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.293 1.293 28 C -0.128 4.128 29 N -0.245 5.245 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.406 0.594 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.070 0.930 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.293 -1.201 -16.267 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.220 4.220 4 C -0.219 4.219 5 N -0.041 5.041 6 N -0.051 5.051 7 N -0.133 5.133 8 C -0.153 4.153 9 C 0.390 3.610 10 O -0.369 6.369 11 N -0.351 5.351 12 C 0.044 3.956 13 H 0.121 0.879 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.176 4.176 17 C 0.069 3.931 18 H 0.071 0.929 19 N -0.364 5.364 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.578 5.578 24 Si 0.735 3.265 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.167 4.167 29 N -0.097 5.097 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.241 0.759 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.220 0.780 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.961 -0.921 -16.570 26.736 hybrid contribution 0.802 0.201 0.619 1.033 sum -20.159 -0.720 -15.951 25.716 Atomic orbital electron populations 1.22107 0.89816 1.04692 1.04462 1.21519 0.96572 0.92940 0.79369 1.22273 1.03719 0.91782 1.04209 1.22264 1.03661 1.01055 0.94919 1.50749 1.00994 1.34300 1.18085 1.78846 1.21682 1.08977 0.95575 1.76114 1.00176 1.17715 1.19292 1.25491 0.94608 1.01837 0.93401 1.16158 0.84560 0.79031 0.81262 1.90906 1.25053 1.54435 1.66554 1.45904 1.11370 1.56156 1.21696 1.21218 0.86094 0.97454 0.90854 0.87888 1.21871 0.98351 0.95952 0.99873 1.21356 0.97268 1.00925 0.95177 1.22186 1.00538 0.98865 0.96019 1.20164 0.87398 0.89088 0.96473 0.92947 1.42522 1.27596 1.38949 1.27370 1.19265 1.02339 1.13978 1.01289 0.91153 1.24735 0.99338 0.98892 0.97993 1.69677 1.35706 1.23604 1.28816 0.86166 0.82243 0.77270 0.80794 1.20642 1.21994 1.22026 1.22095 0.99420 1.01942 0.93250 1.75021 1.02520 1.16872 1.15337 0.90476 0.89076 0.90515 0.90069 0.88939 0.91226 0.91307 0.88936 0.90118 0.75944 0.92485 0.92180 0.93177 0.90252 0.91946 0.93786 0.78047 0.93582 0.91154 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 7.90 37.16 0.29 -0.39 16 2 C 0.18 1.19 1.30 -131.82 -0.17 1.02 16 3 C -0.16 -0.93 8.66 37.16 0.32 -0.61 16 4 C -0.16 -0.87 8.66 37.15 0.32 -0.55 16 5 N -0.13 -1.42 3.72 0.52 0.00 -1.42 16 6 N -0.06 -0.72 12.21 60.35 0.74 0.02 16 7 N -0.26 -3.60 12.26 32.10 0.39 -3.21 16 8 C 0.13 2.00 8.14 -156.24 -1.27 0.73 16 9 C 0.61 10.35 7.80 -12.25 -0.10 10.25 16 10 O -0.50 -10.30 16.76 5.34 0.09 -10.21 16 11 N -0.70 -10.38 5.07 -54.70 -0.28 -10.66 16 12 C 0.15 2.45 2.28 -67.93 -0.16 2.30 16 13 H 0.10 2.15 5.94 -51.93 -0.31 1.84 16 14 C -0.12 -1.93 5.49 -26.73 -0.15 -2.08 16 15 C -0.11 -1.90 5.77 -26.73 -0.15 -2.05 16 16 C -0.14 -2.36 5.61 -26.73 -0.15 -2.51 16 17 C 0.18 3.44 3.10 -67.93 -0.21 3.23 16 18 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 19 N -0.72 -17.67 4.28 -53.43 -0.23 -17.90 16 20 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 24 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 C -0.13 -2.04 5.08 -26.73 -0.14 -2.18 16 29 N -0.24 -3.49 11.85 32.11 0.38 -3.11 16 30 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.41 5.01 8.35 -40.82 -0.34 4.67 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.66 7.60 -51.93 -0.39 1.27 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.38 10.18 6.06 -40.82 -0.25 9.94 16 47 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -33.93 397.74 -7.03 -40.96 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -8.02 Total: 9.69 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.80 Total: 0.01 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: 1.73 Total: -64.03 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.93 -7.03 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981102039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.429 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds