Wall clock time and date at job start Tue Mar 31 2020 20:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47270 * 2 1 4 4 C 1.52994 * 109.47076 * 239.99961 * 2 1 3 5 5 N 1.46504 * 109.46986 * 120.00143 * 2 1 3 6 6 N 1.28723 * 125.32197 * 0.02562 * 5 2 1 7 7 N 1.28979 * 108.98756 * 179.97438 * 6 5 2 8 8 C 1.34183 * 107.25322 * 359.97438 * 7 6 5 9 9 C 1.48009 * 126.69900 * 179.97438 * 8 7 6 10 10 O 1.21533 * 120.00192 * 180.02562 * 9 8 7 11 11 N 1.34781 * 119.99866 * 0.03640 * 9 8 7 12 12 C 1.46499 * 119.99874 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.47397 * 34.99792 * 12 11 9 14 14 C 1.53000 * 109.46840 * 274.99457 * 12 11 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 19 19 N 1.46496 * 109.46832 * 299.99302 * 17 16 15 20 20 C 1.36939 * 120.00484 * 275.00002 * 19 17 16 21 21 H 1.08005 * 119.99602 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00359 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00130 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47183 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47030 * 120.00412 * 24 22 20 27 27 H 1.48496 * 109.47318 * 240.00302 * 24 22 20 28 28 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 29 29 N 1.28870 * 125.31782 * 180.25398 * 5 2 1 30 30 H 1.09009 * 109.46975 * 300.00182 * 1 2 3 31 31 H 1.09003 * 109.47133 * 59.99581 * 1 2 3 32 32 H 1.08992 * 109.47450 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46878 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47264 * 299.99856 * 3 2 1 35 35 H 1.09004 * 109.47122 * 60.00457 * 3 2 1 36 36 H 1.08998 * 109.47378 * 299.99937 * 4 2 1 37 37 H 1.09004 * 109.47506 * 60.00265 * 4 2 1 38 38 H 1.09005 * 109.47596 * 180.02562 * 4 2 1 39 39 H 0.97002 * 119.99716 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.47398 * 300.00326 * 14 12 11 41 41 H 1.09001 * 109.47194 * 60.00507 * 14 12 11 42 42 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 43 43 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 44 44 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 45 45 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 46 46 H 0.97001 * 119.99753 * 94.99745 * 19 17 16 47 47 H 0.97000 * 120.00591 * 179.97438 * 23 22 20 48 48 H 1.08993 * 109.47194 * 179.97438 * 28 17 16 49 49 H 1.09002 * 109.46695 * 59.99734 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1962 6 7 1.2762 -1.2170 2.1068 7 7 2.0307 -1.7403 3.0125 8 6 3.3028 -1.5272 2.6426 9 6 4.5189 -1.9490 3.3732 10 8 5.6182 -1.6896 2.9244 11 7 4.4073 -2.6209 4.5363 12 6 5.6110 -3.0389 5.2592 13 1 6.3895 -2.2864 5.1344 14 6 6.1012 -4.3771 4.7025 15 6 7.3579 -4.8140 5.4579 16 6 7.0315 -4.9689 6.9446 17 6 6.5411 -3.6307 7.5012 18 1 6.3081 -3.7413 8.5603 19 7 7.5877 -2.6194 7.3340 20 6 8.5780 -2.4972 8.2719 21 1 8.5875 -3.1467 9.1348 22 6 9.5699 -1.5393 8.1132 23 7 9.5585 -0.7481 7.0614 24 14 10.9211 -1.3731 9.3923 25 1 10.7089 -2.3731 10.4694 26 1 12.2403 -1.6080 8.7522 27 1 10.8886 -0.0063 9.9720 28 6 5.2844 -3.1938 6.7459 29 7 3.2580 -0.8626 1.5033 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8901 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 3.5299 -2.8277 4.8946 40 1 5.3226 -5.1297 4.8273 41 1 6.3335 -4.2668 3.6433 42 1 7.7075 -5.7671 5.0611 43 1 8.1367 -4.0615 5.3335 44 1 7.9269 -5.2797 7.4828 45 1 6.2527 -5.7214 7.0690 46 1 7.5793 -2.0364 6.5588 47 1 10.2515 -0.0784 6.9506 48 1 4.9348 -2.2408 7.1427 49 1 4.5057 -3.9464 6.8703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981102039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:12 Heat of formation + Delta-G solvation = 67.135587 kcal Electronic energy + Delta-G solvation = -29542.152095 eV Core-core repulsion = 25541.309513 eV Total energy + Delta-G solvation = -4000.842582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.62363 -41.23063 -39.46638 -38.61310 -36.15636 -34.91253 -34.62205 -33.59864 -32.67093 -30.76531 -29.71168 -28.59717 -28.55205 -26.50439 -25.65396 -25.60934 -23.31076 -23.24032 -22.12527 -21.60946 -20.27684 -19.23334 -18.99123 -18.57212 -17.75978 -17.40309 -16.52454 -16.33433 -16.15696 -15.46055 -15.32798 -15.27927 -15.24463 -15.15646 -15.10689 -14.76390 -14.07533 -13.83474 -13.49613 -13.42821 -13.40992 -13.30344 -13.23397 -12.87403 -12.85678 -12.84505 -12.65211 -12.57103 -12.38362 -12.21120 -12.13256 -12.12255 -12.09001 -11.78430 -11.76824 -11.58760 -11.49351 -11.27879 -11.03972 -10.82636 -10.19329 -8.92990 -7.88190 -5.15707 -0.18395 0.23156 0.62022 1.47604 1.48322 1.58158 1.64299 1.86016 2.59647 2.75735 2.93250 3.45284 3.47257 3.55487 3.62982 3.75028 3.90002 3.96629 4.08613 4.18076 4.28656 4.36770 4.40254 4.45808 4.51252 4.55238 4.58928 4.59618 4.69803 4.72360 4.72489 4.76673 4.83219 5.00736 5.01383 5.09849 5.12577 5.16024 5.16549 5.21984 5.29581 5.37739 5.44636 5.55183 5.63408 5.70447 6.22850 6.33764 6.87051 7.01920 7.39277 8.18769 8.39088 9.35563 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018616 B = 0.002393 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.721868 B =11699.335720 C =12453.907259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 C -0.159 4.159 4 C -0.157 4.157 5 N -0.109 5.109 6 N -0.055 5.055 7 N -0.262 5.262 8 C 0.116 3.884 9 C 0.612 3.388 10 O -0.547 6.547 11 N -0.682 5.682 12 C 0.153 3.847 13 H 0.053 0.947 14 C -0.112 4.112 15 C -0.105 4.105 16 C -0.127 4.127 17 C 0.168 3.832 18 H 0.057 0.943 19 N -0.734 5.734 20 C -0.227 4.227 21 H 0.080 0.920 22 C -0.083 4.083 23 N -0.973 5.973 24 Si 0.968 3.032 25 H -0.263 1.263 26 H -0.299 1.299 27 H -0.298 1.298 28 C -0.116 4.116 29 N -0.261 5.261 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.131 0.869 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.130 0.870 38 H 0.060 0.940 39 H 0.421 0.579 40 H 0.094 0.906 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.030 0.970 44 H 0.042 0.958 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.246 0.754 48 H 0.062 0.938 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.294 -2.589 -16.582 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.080 3.920 3 C -0.218 4.218 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.047 5.047 7 N -0.136 5.136 8 C -0.168 4.168 9 C 0.392 3.608 10 O -0.421 6.421 11 N -0.333 5.333 12 C 0.049 3.951 13 H 0.071 0.929 14 C -0.150 4.150 15 C -0.144 4.144 16 C -0.167 4.167 17 C 0.060 3.940 18 H 0.075 0.925 19 N -0.375 5.375 20 C -0.359 4.359 21 H 0.097 0.903 22 C -0.274 4.274 23 N -0.625 5.625 24 Si 0.798 3.202 25 H -0.187 1.187 26 H -0.227 1.227 27 H -0.226 1.226 28 C -0.155 4.155 29 N -0.115 5.115 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.148 0.852 38 H 0.079 0.921 39 H 0.259 0.741 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -24.043 -2.372 -16.838 29.448 hybrid contribution 1.593 0.630 0.619 1.821 sum -22.450 -1.741 -16.219 27.751 Atomic orbital electron populations 1.22180 0.87582 1.04928 1.05952 1.22236 0.98267 0.93208 0.78244 1.22323 1.02385 0.91335 1.05718 1.22310 1.02397 1.01276 0.95590 1.51327 0.99924 1.32916 1.18440 1.78769 1.21409 1.08912 0.95619 1.76072 0.99464 1.18179 1.19912 1.25093 0.94424 1.03243 0.94042 1.16360 0.84508 0.78485 0.81446 1.90882 1.26989 1.56354 1.67855 1.45679 1.11598 1.55238 1.20825 1.20978 0.85543 0.96662 0.91909 0.92851 1.21787 0.98536 0.96094 0.98631 1.21285 0.96721 1.00418 0.95926 1.22067 1.00965 0.98491 0.95134 1.20497 0.87310 0.88752 0.97462 0.92477 1.42761 1.28436 1.40050 1.26293 1.19694 1.02223 1.12648 1.01346 0.90258 1.25528 1.02181 0.99575 1.00149 1.69860 1.36618 1.24848 1.31164 0.85132 0.79077 0.77136 0.78821 1.18675 1.22696 1.22551 1.21990 0.98880 1.03000 0.91625 1.74988 1.04197 1.17049 1.15275 0.91147 0.85404 0.90879 0.92190 0.85117 0.92009 0.91682 0.85172 0.92129 0.74065 0.88783 0.93572 0.91117 0.95083 0.93878 0.89482 0.79691 0.94470 0.91954 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 7.90 71.98 0.57 -0.36 16 2 C 0.16 1.88 1.30 3.60 0.00 1.88 16 3 C -0.16 -1.59 8.66 71.98 0.62 -0.97 16 4 C -0.16 -1.41 8.66 71.98 0.62 -0.79 16 5 N -0.11 -2.39 3.72 -152.26 -0.57 -2.96 16 6 N -0.05 -1.31 12.21 37.02 0.45 -0.86 16 7 N -0.26 -7.15 12.26 -52.36 -0.64 -7.79 16 8 C 0.12 3.58 8.14 137.15 1.12 4.69 16 9 C 0.61 21.38 7.80 86.83 0.68 22.06 16 10 O -0.55 -24.00 16.76 -3.82 -0.06 -24.06 16 11 N -0.68 -19.99 5.07 -445.25 -2.26 -22.25 16 12 C 0.15 5.11 2.28 44.99 0.10 5.21 16 13 H 0.05 2.38 5.94 -2.39 -0.01 2.36 16 14 C -0.11 -3.42 5.49 30.59 0.17 -3.25 16 15 C -0.11 -3.60 5.77 30.59 0.18 -3.42 16 16 C -0.13 -4.15 5.61 30.60 0.17 -3.98 16 17 C 0.17 6.25 3.10 44.99 0.14 6.39 16 18 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 19 N -0.73 -36.84 4.28 -322.94 -1.38 -38.22 16 20 C -0.23 -12.62 9.93 84.03 0.83 -11.79 16 21 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 22 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16 23 N -0.97 -62.38 13.06 21.65 0.28 -62.10 16 24 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 27 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 28 C -0.12 -3.50 5.08 30.59 0.16 -3.34 16 29 N -0.26 -7.59 11.85 -52.31 -0.62 -8.21 16 30 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.13 0.17 8.14 -2.38 -0.02 0.15 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.42 9.68 8.35 -92.71 -0.77 8.91 16 40 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.03 1.35 7.60 -2.39 -0.02 1.33 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.37 20.70 6.06 -92.71 -0.56 20.14 16 47 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 48 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -79.22 397.74 2.69 -76.53 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -0.37 Total: 32.39 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.83 Total: 7.92 kcal Atomic # 7 Polarization: -137.66 SS G_CDS: -4.73 Total: -142.39 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.06 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -79.22 2.69 -76.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981102039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.666 kcal (2) G-P(sol) polarization free energy of solvation -79.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds