Wall clock time and date at job start Tue Mar 31 2020 20:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47362 * 2 1 4 4 C 1.53004 * 109.47441 * 239.99891 * 2 1 3 5 5 N 1.46497 * 109.46906 * 120.00096 * 2 1 3 6 6 N 1.28723 * 125.31895 * 240.03851 * 5 2 1 7 7 N 1.28989 * 108.98777 * 179.72918 * 6 5 2 8 8 C 1.34186 * 107.24992 * 0.37187 * 7 6 5 9 9 C 1.48003 * 126.69958 * 179.89166 * 8 7 6 10 10 O 1.21536 * 120.00545 * 179.68599 * 9 8 7 11 11 N 1.34777 * 119.99877 * 359.69592 * 9 8 7 12 12 C 1.46497 * 120.00376 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46725 * 324.99686 * 12 11 9 14 14 C 1.53002 * 109.47499 * 84.99642 * 12 11 9 15 15 C 1.53002 * 109.47128 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47106 * 300.00123 * 15 14 12 17 17 C 1.52997 * 109.47482 * 60.00162 * 16 15 14 18 18 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 19 19 N 1.46505 * 109.47212 * 179.97438 * 17 16 15 20 20 C 1.36931 * 119.99990 * 275.00043 * 19 17 16 21 21 H 1.08004 * 120.00112 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00062 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99605 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00140 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47203 * 90.00098 * 24 22 20 26 26 H 1.48499 * 109.47198 * 209.99899 * 24 22 20 27 27 H 1.48503 * 109.47263 * 329.99819 * 24 22 20 28 28 C 1.52997 * 109.47389 * 204.99860 * 12 11 9 29 29 N 1.28876 * 125.32232 * 60.00223 * 5 2 1 30 30 H 1.09000 * 109.47243 * 300.00068 * 1 2 3 31 31 H 1.09001 * 109.46702 * 60.00169 * 1 2 3 32 32 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47287 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46882 * 300.00360 * 3 2 1 35 35 H 1.09000 * 109.46997 * 59.99782 * 3 2 1 36 36 H 1.08996 * 109.47342 * 300.00494 * 4 2 1 37 37 H 1.08999 * 109.46699 * 59.99704 * 4 2 1 38 38 H 1.08996 * 109.47481 * 180.02562 * 4 2 1 39 39 H 0.97003 * 120.00267 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.46698 * 300.00290 * 14 12 11 41 41 H 1.09002 * 109.46838 * 59.99786 * 14 12 11 42 42 H 1.09002 * 109.47070 * 60.00059 * 15 14 12 43 43 H 1.08996 * 109.46550 * 179.97438 * 15 14 12 44 44 H 1.09002 * 109.47103 * 299.99915 * 16 15 14 45 45 H 1.08998 * 109.46862 * 180.02562 * 16 15 14 46 46 H 0.97005 * 119.99239 * 94.99888 * 19 17 16 47 47 H 0.96998 * 119.99451 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.47140 * 59.99537 * 28 12 11 49 49 H 1.09002 * 109.47497 * 299.99913 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1961 6 7 2.7608 -0.1660 2.1073 7 7 2.9979 -1.0502 3.0161 8 6 2.3771 -2.1800 2.6436 9 6 2.3685 -3.4668 3.3746 10 8 1.7575 -4.4168 2.9258 11 7 3.0382 -3.5853 4.5382 12 6 3.0294 -4.8588 5.2622 13 1 2.0599 -5.3411 5.1371 14 6 4.1270 -5.7688 4.7071 15 6 4.1173 -7.0991 5.4628 16 6 4.3708 -6.8428 6.9497 17 6 3.2732 -5.9329 7.5048 18 1 2.3037 -6.4150 7.3794 19 7 3.5157 -5.6881 8.9288 20 6 3.0655 -6.5817 9.8635 21 1 2.5312 -7.4668 9.5511 22 6 3.2948 -6.3494 11.2128 23 7 3.9454 -5.2704 11.5934 24 14 2.6812 -7.5687 12.4879 25 1 3.7290 -8.5903 12.7404 26 1 2.3746 -6.8514 13.7515 27 1 1.4522 -8.2339 11.9856 28 6 3.2833 -4.6022 6.7489 29 7 1.7709 -1.9182 1.5009 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 3.5262 -2.8273 4.8964 40 1 3.9461 -5.9517 3.6479 41 1 5.0965 -5.2865 4.8321 42 1 3.1478 -7.5812 5.3374 43 1 4.8990 -7.7474 5.0670 44 1 5.3404 -6.3608 7.0751 45 1 4.3644 -7.7906 7.4879 46 1 3.9953 -4.8928 9.2093 47 1 4.1059 -5.1083 12.5362 48 1 2.5013 -3.9539 7.1445 49 1 4.2528 -4.1199 6.8741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981102043.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:18 Heat of formation + Delta-G solvation = 86.849428 kcal Electronic energy + Delta-G solvation = -28966.665135 eV Core-core repulsion = 24966.677409 eV Total energy + Delta-G solvation = -3999.987726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.70856 -40.00529 -38.21507 -37.83336 -34.80143 -33.83086 -33.40350 -32.66773 -31.10802 -29.50559 -28.25043 -28.20020 -27.79483 -25.51641 -24.78577 -23.69753 -22.10191 -21.58690 -21.14464 -20.40476 -19.54426 -18.20493 -17.69127 -17.20851 -16.85911 -16.25986 -15.23648 -15.11315 -14.82089 -14.61950 -14.38494 -14.30837 -14.02115 -13.77172 -13.58225 -13.49084 -13.15237 -13.13512 -13.00925 -12.70953 -12.52443 -12.49098 -12.18210 -12.13726 -12.06164 -11.78268 -11.34341 -11.28749 -10.98714 -10.96273 -10.85769 -10.70934 -10.65033 -10.53286 -10.34950 -10.20184 -10.13802 -9.75836 -9.61314 -9.07483 -8.84731 -6.93797 -5.74410 -3.02969 0.75554 1.23825 1.32794 2.66910 2.97099 3.45566 3.50932 3.52393 3.56549 3.81173 3.86753 3.97964 4.30730 4.59920 4.76942 4.79147 4.79916 4.93926 4.95955 4.99829 5.01584 5.02386 5.08614 5.26643 5.32640 5.37608 5.44323 5.51620 5.56054 5.61773 5.69260 5.73487 5.79161 5.88873 5.98047 6.02953 6.15290 6.25492 6.34047 6.49503 6.54696 6.61933 6.74701 6.98793 7.14778 7.30306 7.73163 7.86991 8.01259 8.44280 9.55448 10.12853 10.47636 11.48273 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023690 B = 0.002002 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.637305 B =13983.333539 C =14527.780815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.153 4.153 4 C -0.160 4.160 5 N -0.126 5.126 6 N -0.055 5.055 7 N -0.255 5.255 8 C 0.128 3.872 9 C 0.616 3.384 10 O -0.510 6.510 11 N -0.698 5.698 12 C 0.150 3.850 13 H 0.093 0.907 14 C -0.126 4.126 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.184 3.816 18 H 0.049 0.951 19 N -0.724 5.724 20 C -0.236 4.236 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.130 4.130 29 N -0.246 5.246 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.410 0.590 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.071 0.929 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 13.063 -28.375 31.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 C -0.212 4.212 4 C -0.219 4.219 5 N -0.040 5.040 6 N -0.048 5.048 7 N -0.130 5.130 8 C -0.157 4.157 9 C 0.395 3.605 10 O -0.381 6.381 11 N -0.349 5.349 12 C 0.047 3.953 13 H 0.111 0.889 14 C -0.164 4.164 15 C -0.153 4.153 16 C -0.178 4.178 17 C 0.073 3.927 18 H 0.067 0.933 19 N -0.364 5.364 20 C -0.368 4.368 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.169 4.169 29 N -0.099 5.099 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.246 0.754 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.727 12.834 -28.698 31.658 hybrid contribution 0.079 -0.391 1.113 1.183 sum -3.648 12.443 -27.585 30.481 Atomic orbital electron populations 1.22268 0.90512 1.04873 1.04278 1.21538 0.96442 0.93118 0.79329 1.22115 1.03260 0.91252 1.04527 1.22264 1.02525 1.02165 0.94933 1.50767 1.29732 1.05406 1.18140 1.78890 1.08471 1.21999 0.95422 1.76159 1.19570 0.98101 1.19167 1.25408 0.99658 0.97258 0.93330 1.16121 0.80157 0.83169 0.81064 1.90852 1.42915 1.37487 1.66890 1.45915 1.51323 1.16163 1.21493 1.21189 1.00647 0.82209 0.91296 0.88937 1.21911 0.98556 0.96352 0.99620 1.21480 1.01559 0.95756 0.96459 1.22300 1.00709 1.01502 0.93281 1.20105 0.96160 0.91376 0.85023 0.93261 1.42399 1.67840 1.27110 0.99078 1.19242 1.29005 1.01632 0.86875 0.91128 1.24743 1.01335 0.97931 0.97067 1.69664 1.46173 1.27051 1.15284 0.86201 0.78331 0.80333 0.81408 1.21776 1.21847 1.20763 1.22123 1.02593 1.00395 0.91812 1.74988 1.20733 0.98896 1.15274 0.91206 0.88896 0.90171 0.90454 0.89030 0.90419 0.90185 0.88900 0.91256 0.75434 0.92044 0.91743 0.92075 0.92391 0.92572 0.91829 0.78281 0.93561 0.91042 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 8.66 37.16 0.32 -0.41 16 2 C 0.18 1.01 1.30 -131.82 -0.17 0.84 16 3 C -0.15 -0.58 7.90 37.16 0.29 -0.29 16 4 C -0.16 -0.70 8.66 37.16 0.32 -0.38 16 5 N -0.13 -1.27 3.72 0.52 0.00 -1.27 16 6 N -0.06 -0.64 12.21 60.35 0.74 0.10 16 7 N -0.26 -3.35 12.26 32.10 0.39 -2.96 16 8 C 0.13 1.75 8.14 -156.25 -1.27 0.48 16 9 C 0.62 9.03 7.80 -12.26 -0.10 8.94 16 10 O -0.51 -8.84 16.76 5.33 0.09 -8.75 16 11 N -0.70 -9.17 5.07 -54.70 -0.28 -9.45 16 12 C 0.15 2.13 2.45 -67.93 -0.17 1.97 16 13 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 14 C -0.13 -1.70 5.49 -26.73 -0.15 -1.85 16 15 C -0.11 -1.62 5.92 -26.73 -0.16 -1.78 16 16 C -0.14 -2.40 5.50 -26.74 -0.15 -2.55 16 17 C 0.18 3.55 2.77 -67.90 -0.19 3.36 16 18 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 19 N -0.72 -17.82 5.12 -53.40 -0.27 -18.09 16 20 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 21 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 24 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C -0.13 -2.07 4.86 -26.71 -0.13 -2.20 16 29 N -0.25 -3.13 11.85 32.11 0.38 -2.75 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.41 4.79 8.35 -40.82 -0.34 4.45 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 402.18 15.07 6.06 6.06 Total: -1.00 -33.43 402.18 -7.17 -40.60 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -8.20 Total: 7.52 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.78 Total: -1.05 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 1.69 Total: -61.82 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.43 -7.17 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981102043.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.453 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds