Wall clock time and date at job start Tue Mar 31 2020 20:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47362 * 2 1 4 4 C 1.53004 * 109.47441 * 239.99891 * 2 1 3 5 5 N 1.46497 * 109.46906 * 120.00096 * 2 1 3 6 6 N 1.28723 * 125.31895 * 240.03851 * 5 2 1 7 7 N 1.28989 * 108.98777 * 179.72918 * 6 5 2 8 8 C 1.34186 * 107.24992 * 0.37187 * 7 6 5 9 9 C 1.48003 * 126.69958 * 179.89166 * 8 7 6 10 10 O 1.21536 * 120.00545 * 179.68599 * 9 8 7 11 11 N 1.34777 * 119.99877 * 359.69592 * 9 8 7 12 12 C 1.46497 * 120.00376 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46725 * 324.99686 * 12 11 9 14 14 C 1.53002 * 109.47499 * 84.99642 * 12 11 9 15 15 C 1.53002 * 109.47128 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47106 * 300.00123 * 15 14 12 17 17 C 1.52997 * 109.47482 * 60.00162 * 16 15 14 18 18 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 19 19 N 1.46505 * 109.47212 * 179.97438 * 17 16 15 20 20 C 1.36931 * 119.99990 * 275.00043 * 19 17 16 21 21 H 1.08004 * 120.00112 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00062 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99605 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00140 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47203 * 90.00098 * 24 22 20 26 26 H 1.48499 * 109.47198 * 209.99899 * 24 22 20 27 27 H 1.48503 * 109.47263 * 329.99819 * 24 22 20 28 28 C 1.52997 * 109.47389 * 204.99860 * 12 11 9 29 29 N 1.28876 * 125.32232 * 60.00223 * 5 2 1 30 30 H 1.09000 * 109.47243 * 300.00068 * 1 2 3 31 31 H 1.09001 * 109.46702 * 60.00169 * 1 2 3 32 32 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47287 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46882 * 300.00360 * 3 2 1 35 35 H 1.09000 * 109.46997 * 59.99782 * 3 2 1 36 36 H 1.08996 * 109.47342 * 300.00494 * 4 2 1 37 37 H 1.08999 * 109.46699 * 59.99704 * 4 2 1 38 38 H 1.08996 * 109.47481 * 180.02562 * 4 2 1 39 39 H 0.97003 * 120.00267 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.46698 * 300.00290 * 14 12 11 41 41 H 1.09002 * 109.46838 * 59.99786 * 14 12 11 42 42 H 1.09002 * 109.47070 * 60.00059 * 15 14 12 43 43 H 1.08996 * 109.46550 * 179.97438 * 15 14 12 44 44 H 1.09002 * 109.47103 * 299.99915 * 16 15 14 45 45 H 1.08998 * 109.46862 * 180.02562 * 16 15 14 46 46 H 0.97005 * 119.99239 * 94.99888 * 19 17 16 47 47 H 0.96998 * 119.99451 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.47140 * 59.99537 * 28 12 11 49 49 H 1.09002 * 109.47497 * 299.99913 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1961 6 7 2.7608 -0.1660 2.1073 7 7 2.9979 -1.0502 3.0161 8 6 2.3771 -2.1800 2.6436 9 6 2.3685 -3.4668 3.3746 10 8 1.7575 -4.4168 2.9258 11 7 3.0382 -3.5853 4.5382 12 6 3.0294 -4.8588 5.2622 13 1 2.0599 -5.3411 5.1371 14 6 4.1270 -5.7688 4.7071 15 6 4.1173 -7.0991 5.4628 16 6 4.3708 -6.8428 6.9497 17 6 3.2732 -5.9329 7.5048 18 1 2.3037 -6.4150 7.3794 19 7 3.5157 -5.6881 8.9288 20 6 3.0655 -6.5817 9.8635 21 1 2.5312 -7.4668 9.5511 22 6 3.2948 -6.3494 11.2128 23 7 3.9454 -5.2704 11.5934 24 14 2.6812 -7.5687 12.4879 25 1 3.7290 -8.5903 12.7404 26 1 2.3746 -6.8514 13.7515 27 1 1.4522 -8.2339 11.9856 28 6 3.2833 -4.6022 6.7489 29 7 1.7709 -1.9182 1.5009 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 3.5262 -2.8273 4.8964 40 1 3.9461 -5.9517 3.6479 41 1 5.0965 -5.2865 4.8321 42 1 3.1478 -7.5812 5.3374 43 1 4.8990 -7.7474 5.0670 44 1 5.3404 -6.3608 7.0751 45 1 4.3644 -7.7906 7.4879 46 1 3.9953 -4.8928 9.2093 47 1 4.1059 -5.1083 12.5362 48 1 2.5013 -3.9539 7.1445 49 1 4.2528 -4.1199 6.8741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981102043.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:17 Heat of formation + Delta-G solvation = 63.582800 kcal Electronic energy + Delta-G solvation = -28967.674051 eV Core-core repulsion = 24966.677409 eV Total energy + Delta-G solvation = -4000.996642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.61932 -41.20413 -39.35164 -38.60741 -36.33880 -35.04429 -34.63282 -33.60462 -32.89733 -30.81418 -29.46789 -28.59683 -28.54061 -26.49804 -25.67367 -25.62303 -23.34481 -22.90093 -22.00221 -21.51088 -20.91341 -19.45577 -18.80013 -18.56974 -17.75997 -17.53298 -16.64105 -16.23208 -16.07263 -15.50162 -15.29131 -15.27821 -15.21237 -15.09809 -14.98487 -14.83743 -14.25137 -14.05151 -13.62433 -13.48084 -13.40924 -13.29147 -13.23263 -12.90327 -12.85158 -12.80086 -12.64953 -12.37888 -12.27868 -12.17909 -12.12633 -12.11768 -12.02295 -11.96764 -11.77852 -11.66213 -11.49502 -11.38620 -11.17999 -10.85952 -10.24491 -8.97815 -7.91858 -5.19548 -0.18528 0.23053 0.62256 1.48463 1.49528 1.57845 1.63031 1.84922 2.57670 2.76093 2.92610 3.41435 3.48051 3.55365 3.61214 3.64029 3.85085 3.96689 4.03939 4.24458 4.28944 4.32052 4.39985 4.42467 4.52310 4.52365 4.58744 4.59159 4.60179 4.66508 4.72506 4.72820 4.78086 4.97516 5.01912 5.09659 5.10791 5.16734 5.17273 5.21830 5.24526 5.32211 5.37545 5.52667 5.55222 5.67879 6.19005 6.31051 6.80065 7.01968 7.36985 8.13160 8.36520 9.31557 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023690 B = 0.002002 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.637305 B =13983.333539 C =14527.780815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 C -0.150 4.150 4 C -0.157 4.157 5 N -0.109 5.109 6 N -0.058 5.058 7 N -0.268 5.268 8 C 0.113 3.887 9 C 0.620 3.380 10 O -0.540 6.540 11 N -0.687 5.687 12 C 0.160 3.840 13 H 0.082 0.918 14 C -0.119 4.119 15 C -0.105 4.105 16 C -0.128 4.128 17 C 0.178 3.822 18 H 0.041 0.959 19 N -0.736 5.736 20 C -0.234 4.234 21 H 0.074 0.926 22 C -0.078 4.078 23 N -0.969 5.969 24 Si 0.969 3.031 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.271 1.271 28 C -0.117 4.117 29 N -0.257 5.257 30 H 0.060 0.940 31 H 0.129 0.871 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.129 0.871 38 H 0.062 0.938 39 H 0.418 0.582 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.043 0.957 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.063 0.937 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.588 13.694 -30.781 33.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.081 3.919 3 C -0.208 4.208 4 C -0.215 4.215 5 N -0.026 5.026 6 N -0.050 5.050 7 N -0.142 5.142 8 C -0.171 4.171 9 C 0.400 3.600 10 O -0.414 6.414 11 N -0.338 5.338 12 C 0.056 3.944 13 H 0.100 0.900 14 C -0.157 4.157 15 C -0.143 4.143 16 C -0.168 4.168 17 C 0.069 3.931 18 H 0.059 0.941 19 N -0.375 5.375 20 C -0.366 4.366 21 H 0.092 0.908 22 C -0.270 4.270 23 N -0.620 5.620 24 Si 0.799 3.201 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.196 1.196 28 C -0.156 4.156 29 N -0.111 5.111 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.147 0.853 38 H 0.081 0.919 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.205 0.795 47 H 0.058 0.942 48 H 0.081 0.919 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.005 13.470 -31.144 34.168 hybrid contribution 0.116 -0.505 1.699 1.777 sum -3.889 12.964 -29.445 32.407 Atomic orbital electron populations 1.22314 0.89403 1.04243 1.05678 1.22232 0.97379 0.94063 0.78271 1.22183 1.02876 0.89865 1.05892 1.22308 1.02131 1.01586 0.95506 1.51341 1.28185 1.04611 1.18417 1.78822 1.08850 1.21721 0.95629 1.76123 1.20058 0.98054 1.19942 1.25181 1.00803 0.97140 0.93941 1.16177 0.79564 0.83206 0.81057 1.90829 1.44265 1.38601 1.67743 1.45753 1.50936 1.16083 1.21010 1.20984 1.00568 0.82753 0.90141 0.90001 1.21854 0.98625 0.95706 0.99559 1.21403 1.02411 0.96569 0.93939 1.22107 0.99571 0.99765 0.95333 1.20318 0.96331 0.93515 0.82939 0.94135 1.42583 1.67675 1.26319 1.00960 1.19595 1.27678 1.01751 0.87621 0.90789 1.25516 1.02516 0.99861 0.99081 1.69812 1.48106 1.28939 1.15141 0.85196 0.78092 0.78184 0.78657 1.21522 1.22375 1.19584 1.21911 1.02822 0.98310 0.92534 1.74953 1.20906 1.00178 1.15076 0.92063 0.85222 0.91784 0.91092 0.85439 0.91253 0.91765 0.85259 0.91878 0.74424 0.91585 0.90639 0.91898 0.90361 0.92830 0.93770 0.79466 0.94150 0.91864 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.66 71.98 0.62 -0.50 16 2 C 0.16 1.53 1.30 3.61 0.00 1.53 16 3 C -0.15 -0.77 7.90 71.98 0.57 -0.21 16 4 C -0.16 -1.04 8.66 71.98 0.62 -0.41 16 5 N -0.11 -2.12 3.72 -152.26 -0.57 -2.68 16 6 N -0.06 -1.31 12.21 37.02 0.45 -0.86 16 7 N -0.27 -6.95 12.26 -52.37 -0.64 -7.59 16 8 C 0.11 3.09 8.14 137.15 1.12 4.20 16 9 C 0.62 18.05 7.80 86.83 0.68 18.73 16 10 O -0.54 -18.72 16.76 -3.83 -0.06 -18.79 16 11 N -0.69 -17.61 5.07 -445.26 -2.26 -19.87 16 12 C 0.16 4.40 2.45 44.99 0.11 4.51 16 13 H 0.08 2.49 7.58 -2.39 -0.02 2.48 16 14 C -0.12 -3.01 5.49 30.60 0.17 -2.84 16 15 C -0.10 -2.79 5.92 30.59 0.18 -2.61 16 16 C -0.13 -4.37 5.50 30.59 0.17 -4.20 16 17 C 0.18 6.87 2.77 45.01 0.12 6.99 16 18 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 19 N -0.74 -36.70 5.12 -322.85 -1.65 -38.36 16 20 C -0.23 -13.01 9.93 84.03 0.83 -12.18 16 21 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 22 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 23 N -0.97 -59.46 13.06 21.65 0.28 -59.17 16 24 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 27 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 28 C -0.12 -3.68 4.86 30.61 0.15 -3.53 16 29 N -0.26 -6.48 11.85 -52.32 -0.62 -7.10 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.42 9.45 8.35 -92.71 -0.77 8.68 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.37 19.91 7.80 -92.70 -0.72 19.19 16 47 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 48 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -73.21 402.18 2.23 -70.98 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.54 Total: 29.33 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.82 Total: 5.47 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -5.01 Total: -135.63 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.79 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -73.21 2.23 -70.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981102043.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.563 kcal (2) G-P(sol) polarization free energy of solvation -73.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds