Wall clock time and date at job start Tue Mar 31 2020 20:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46802 * 2 1 4 4 C 1.53000 * 109.47140 * 240.00367 * 2 1 3 5 5 N 1.46496 * 109.47046 * 120.00297 * 2 1 3 6 6 N 1.28723 * 125.31716 * 239.95703 * 5 2 1 7 7 N 1.28990 * 108.98696 * 179.76235 * 6 5 2 8 8 C 1.34184 * 107.24882 * 0.43363 * 7 6 5 9 9 C 1.48007 * 126.69818 * 179.83542 * 8 7 6 10 10 O 1.21534 * 120.00010 * 179.68748 * 9 8 7 11 11 N 1.34781 * 119.99787 * 359.68973 * 9 8 7 12 12 C 1.46492 * 119.99920 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47152 * 324.99856 * 12 11 9 14 14 C 1.53006 * 109.47363 * 84.99933 * 12 11 9 15 15 C 1.52997 * 109.47127 * 59.99700 * 14 12 11 16 16 C 1.53002 * 109.46817 * 60.00361 * 15 14 12 17 17 C 1.52996 * 109.46972 * 299.99733 * 16 15 14 18 18 H 1.09000 * 109.47380 * 299.99696 * 17 16 15 19 19 N 1.46510 * 109.46858 * 180.02562 * 17 16 15 20 20 C 1.36940 * 119.99831 * 85.00321 * 19 17 16 21 21 H 1.07997 * 120.00007 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99598 * 179.97438 * 20 19 17 23 23 N 1.31614 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99569 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47116 * 60.00283 * 24 22 20 26 26 H 1.48499 * 109.47057 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47474 * 299.99898 * 24 22 20 28 28 C 1.52997 * 109.47131 * 60.00459 * 17 16 15 29 29 N 1.28866 * 125.32455 * 60.00132 * 5 2 1 30 30 H 1.08999 * 109.46584 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47284 * 59.99913 * 1 2 3 32 32 H 1.09000 * 109.46869 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46807 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47272 * 300.00094 * 3 2 1 35 35 H 1.08999 * 109.46741 * 60.00707 * 3 2 1 36 36 H 1.08997 * 109.46897 * 300.00397 * 4 2 1 37 37 H 1.09007 * 109.46910 * 59.99393 * 4 2 1 38 38 H 1.08991 * 109.46960 * 179.97438 * 4 2 1 39 39 H 0.96998 * 119.99903 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.46801 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.46998 * 299.99569 * 14 12 11 42 42 H 1.09002 * 109.47153 * 180.02562 * 15 14 12 43 43 H 1.08996 * 109.46952 * 300.00302 * 15 14 12 44 44 H 1.08996 * 109.47407 * 60.00219 * 16 15 14 45 45 H 1.09000 * 109.46986 * 179.97438 * 16 15 14 46 46 H 0.96992 * 119.99953 * 264.99637 * 19 17 16 47 47 H 0.97001 * 119.99639 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.47153 * 179.97438 * 28 17 16 49 49 H 1.08993 * 109.47194 * 60.00154 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 2.7622 -0.1665 2.1065 7 7 2.9995 -1.0507 3.0152 8 6 2.3786 -2.1805 2.6427 9 6 2.3712 -3.4677 3.3731 10 8 1.7600 -4.4175 2.9243 11 7 3.0423 -3.5866 4.5359 12 6 3.0354 -4.8609 5.2585 13 1 2.0663 -5.3440 5.1340 14 6 4.1335 -5.7691 4.7014 15 6 5.4938 -5.0910 4.8762 16 6 5.7489 -4.8355 6.3630 17 6 4.6509 -3.9273 6.9201 18 1 4.6560 -2.9791 6.3825 19 7 4.8956 -3.6822 8.3437 20 6 5.7411 -2.6766 8.7299 21 1 6.2278 -2.0645 7.9850 22 6 5.9724 -2.4440 10.0787 23 7 5.3796 -3.1904 10.9863 24 14 7.1263 -1.0727 10.6054 25 1 6.6144 0.2264 10.1001 26 1 7.2027 -1.0322 12.0879 27 1 8.4795 -1.3225 10.0472 28 6 3.2906 -4.6055 6.7453 29 7 1.7711 -1.9181 1.5009 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 3.5303 -2.8287 4.8939 40 1 4.1286 -6.7171 5.2394 41 1 3.9517 -5.9512 3.6422 42 1 6.2760 -5.7378 4.4788 43 1 5.4988 -4.1429 4.3385 44 1 5.7439 -5.7836 6.9007 45 1 6.7182 -4.3528 6.4876 46 1 4.4586 -4.2321 9.0126 47 1 5.5410 -3.0276 11.9288 48 1 2.5084 -3.9586 7.1426 49 1 3.2855 -5.5535 7.2831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981102044.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:22 Heat of formation + Delta-G solvation = 90.318281 kcal Electronic energy + Delta-G solvation = -29659.546487 eV Core-core repulsion = 25659.709182 eV Total energy + Delta-G solvation = -3999.837305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.60989 -40.10745 -38.18438 -37.78906 -34.54845 -33.74291 -33.19537 -32.49866 -31.11970 -29.70062 -28.18002 -28.14164 -27.85126 -25.49846 -24.69775 -23.68313 -22.12413 -21.46709 -21.08454 -20.84587 -18.81292 -18.29523 -17.60049 -17.20289 -16.92094 -15.79659 -15.43719 -15.03253 -14.81345 -14.59452 -14.37371 -14.36641 -14.11432 -13.69582 -13.50191 -13.42564 -13.08351 -13.01026 -12.93816 -12.46491 -12.42787 -12.42710 -12.10202 -12.04552 -11.89626 -11.74543 -11.68867 -11.23420 -11.18943 -10.97120 -10.83617 -10.74890 -10.55917 -10.40498 -10.30067 -10.18037 -10.14562 -9.71829 -9.50160 -9.01543 -8.82810 -6.93558 -5.73908 -3.02541 0.84514 1.34556 1.41759 2.77613 3.05469 3.46830 3.51294 3.52052 3.64617 3.92281 3.93544 4.04789 4.39810 4.60476 4.84020 4.84968 4.85949 4.98919 5.02166 5.06101 5.08447 5.09048 5.12882 5.18645 5.35820 5.43868 5.49887 5.51020 5.59581 5.64326 5.70655 5.76870 5.87441 5.88477 5.98551 6.07637 6.10854 6.23163 6.31592 6.51799 6.55981 6.60739 6.74184 6.98021 7.11694 7.40468 7.73239 7.96372 8.10733 8.44663 9.55982 10.13066 10.47723 11.48670 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.002734 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.548405 B =10237.593748 C =11656.569819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.176 3.824 3 C -0.154 4.154 4 C -0.160 4.160 5 N -0.127 5.127 6 N -0.054 5.054 7 N -0.251 5.251 8 C 0.127 3.873 9 C 0.616 3.384 10 O -0.516 6.516 11 N -0.692 5.692 12 C 0.153 3.847 13 H 0.089 0.911 14 C -0.128 4.128 15 C -0.117 4.117 16 C -0.136 4.136 17 C 0.178 3.822 18 H 0.044 0.956 19 N -0.723 5.723 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C -0.134 4.134 29 N -0.247 5.247 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.414 0.586 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.072 0.928 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.250 4.371 -25.700 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 C -0.212 4.212 4 C -0.219 4.219 5 N -0.042 5.042 6 N -0.047 5.047 7 N -0.125 5.125 8 C -0.157 4.157 9 C 0.396 3.604 10 O -0.389 6.389 11 N -0.345 5.345 12 C 0.049 3.951 13 H 0.107 0.893 14 C -0.167 4.167 15 C -0.156 4.156 16 C -0.177 4.177 17 C 0.068 3.932 18 H 0.062 0.938 19 N -0.364 5.364 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.173 4.173 29 N -0.100 5.100 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.252 0.748 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.452 4.431 -26.083 28.094 hybrid contribution 0.734 0.528 0.841 1.236 sum -8.717 4.959 -25.241 27.161 Atomic orbital electron populations 1.22263 0.90587 1.04795 1.04238 1.21518 0.96382 0.93139 0.79370 1.22116 1.03326 0.91259 1.04490 1.22261 1.02560 1.02109 0.94936 1.50759 1.29786 1.05433 1.18179 1.78923 1.08369 1.22019 0.95395 1.76221 1.19308 0.98051 1.18968 1.25394 0.99699 0.97305 0.93342 1.16119 0.80103 0.83143 0.81073 1.90824 1.43409 1.37573 1.67068 1.45979 1.50913 1.16234 1.21374 1.21114 0.99771 0.82771 0.91491 0.89253 1.21923 0.95076 0.98667 1.01014 1.21526 0.95934 1.00024 0.98068 1.22283 1.01235 1.00872 0.93284 1.20172 0.90586 0.95070 0.87343 0.93810 1.42397 1.54669 1.39284 1.00037 1.19195 1.18739 1.07884 0.91047 0.91203 1.24726 1.00737 0.99615 0.95848 1.69647 1.46953 1.41461 1.00133 0.86294 0.80772 0.82008 0.77288 1.21229 1.21781 1.21321 1.22145 0.99737 1.02560 0.92821 1.74958 1.20873 0.98914 1.15293 0.91211 0.88958 0.90221 0.90416 0.89089 0.90392 0.90222 0.88963 0.91240 0.74791 0.90711 0.91956 0.92727 0.92569 0.92494 0.91993 0.78256 0.93518 0.90975 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.66 37.16 0.32 -0.51 16 2 C 0.18 1.16 1.30 -131.81 -0.17 0.99 16 3 C -0.15 -0.74 7.90 37.16 0.29 -0.44 16 4 C -0.16 -0.82 8.66 37.16 0.32 -0.50 16 5 N -0.13 -1.42 3.72 0.53 0.00 -1.41 16 6 N -0.05 -0.71 12.21 60.35 0.74 0.03 16 7 N -0.25 -3.74 12.26 32.10 0.39 -3.35 16 8 C 0.13 1.89 8.14 -156.25 -1.27 0.61 16 9 C 0.62 9.51 7.80 -12.25 -0.10 9.41 16 10 O -0.52 -9.00 16.76 5.34 0.09 -8.91 16 11 N -0.69 -9.97 4.23 -54.70 -0.23 -10.20 16 12 C 0.15 2.14 2.78 -67.93 -0.19 1.95 16 13 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 14 C -0.13 -1.71 5.60 -26.73 -0.15 -1.86 16 15 C -0.12 -1.68 5.77 -26.73 -0.15 -1.83 16 16 C -0.14 -2.37 5.50 -26.73 -0.15 -2.52 16 17 C 0.18 3.37 2.60 -67.93 -0.18 3.19 16 18 H 0.04 0.85 6.44 -51.93 -0.33 0.51 16 19 N -0.72 -17.62 5.12 -53.42 -0.27 -17.90 16 20 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 24 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C -0.13 -2.11 5.08 -26.73 -0.14 -2.24 16 29 N -0.25 -3.35 11.85 32.11 0.38 -2.97 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.20 8.14 -51.92 -0.42 -0.22 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.41 6.06 6.62 -40.82 -0.27 5.79 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.82 7.60 -51.93 -0.39 0.42 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -33.15 397.74 -7.03 -40.17 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -8.02 Total: 9.32 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.80 Total: -0.87 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: 1.73 Total: -63.12 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.15 -7.03 -40.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981102044.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.491 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds