Wall clock time and date at job start Tue Mar 31 2020 20:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46802 * 2 1 4 4 C 1.53000 * 109.47140 * 240.00367 * 2 1 3 5 5 N 1.46496 * 109.47046 * 120.00297 * 2 1 3 6 6 N 1.28723 * 125.31716 * 239.95703 * 5 2 1 7 7 N 1.28990 * 108.98696 * 179.76235 * 6 5 2 8 8 C 1.34184 * 107.24882 * 0.43363 * 7 6 5 9 9 C 1.48007 * 126.69818 * 179.83542 * 8 7 6 10 10 O 1.21534 * 120.00010 * 179.68748 * 9 8 7 11 11 N 1.34781 * 119.99787 * 359.68973 * 9 8 7 12 12 C 1.46492 * 119.99920 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47152 * 324.99856 * 12 11 9 14 14 C 1.53006 * 109.47363 * 84.99933 * 12 11 9 15 15 C 1.52997 * 109.47127 * 59.99700 * 14 12 11 16 16 C 1.53002 * 109.46817 * 60.00361 * 15 14 12 17 17 C 1.52996 * 109.46972 * 299.99733 * 16 15 14 18 18 H 1.09000 * 109.47380 * 299.99696 * 17 16 15 19 19 N 1.46510 * 109.46858 * 180.02562 * 17 16 15 20 20 C 1.36940 * 119.99831 * 85.00321 * 19 17 16 21 21 H 1.07997 * 120.00007 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99598 * 179.97438 * 20 19 17 23 23 N 1.31614 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99569 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47116 * 60.00283 * 24 22 20 26 26 H 1.48499 * 109.47057 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47474 * 299.99898 * 24 22 20 28 28 C 1.52997 * 109.47131 * 60.00459 * 17 16 15 29 29 N 1.28866 * 125.32455 * 60.00132 * 5 2 1 30 30 H 1.08999 * 109.46584 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47284 * 59.99913 * 1 2 3 32 32 H 1.09000 * 109.46869 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46807 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47272 * 300.00094 * 3 2 1 35 35 H 1.08999 * 109.46741 * 60.00707 * 3 2 1 36 36 H 1.08997 * 109.46897 * 300.00397 * 4 2 1 37 37 H 1.09007 * 109.46910 * 59.99393 * 4 2 1 38 38 H 1.08991 * 109.46960 * 179.97438 * 4 2 1 39 39 H 0.96998 * 119.99903 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.46801 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.46998 * 299.99569 * 14 12 11 42 42 H 1.09002 * 109.47153 * 180.02562 * 15 14 12 43 43 H 1.08996 * 109.46952 * 300.00302 * 15 14 12 44 44 H 1.08996 * 109.47407 * 60.00219 * 16 15 14 45 45 H 1.09000 * 109.46986 * 179.97438 * 16 15 14 46 46 H 0.96992 * 119.99953 * 264.99637 * 19 17 16 47 47 H 0.97001 * 119.99639 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.47153 * 179.97438 * 28 17 16 49 49 H 1.08993 * 109.47194 * 60.00154 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 2.7622 -0.1665 2.1065 7 7 2.9995 -1.0507 3.0152 8 6 2.3786 -2.1805 2.6427 9 6 2.3712 -3.4677 3.3731 10 8 1.7600 -4.4175 2.9243 11 7 3.0423 -3.5866 4.5359 12 6 3.0354 -4.8609 5.2585 13 1 2.0663 -5.3440 5.1340 14 6 4.1335 -5.7691 4.7014 15 6 5.4938 -5.0910 4.8762 16 6 5.7489 -4.8355 6.3630 17 6 4.6509 -3.9273 6.9201 18 1 4.6560 -2.9791 6.3825 19 7 4.8956 -3.6822 8.3437 20 6 5.7411 -2.6766 8.7299 21 1 6.2278 -2.0645 7.9850 22 6 5.9724 -2.4440 10.0787 23 7 5.3796 -3.1904 10.9863 24 14 7.1263 -1.0727 10.6054 25 1 6.6144 0.2264 10.1001 26 1 7.2027 -1.0322 12.0879 27 1 8.4795 -1.3225 10.0472 28 6 3.2906 -4.6055 6.7453 29 7 1.7711 -1.9181 1.5009 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 3.5303 -2.8287 4.8939 40 1 4.1286 -6.7171 5.2394 41 1 3.9517 -5.9512 3.6422 42 1 6.2760 -5.7378 4.4788 43 1 5.4988 -4.1429 4.3385 44 1 5.7439 -5.7836 6.9007 45 1 6.7182 -4.3528 6.4876 46 1 4.4586 -4.2321 9.0126 47 1 5.5410 -3.0276 11.9288 48 1 2.5084 -3.9586 7.1426 49 1 3.2855 -5.5535 7.2831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981102044.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:21 Heat of formation + Delta-G solvation = 67.751225 kcal Electronic energy + Delta-G solvation = -29660.525068 eV Core-core repulsion = 25659.709182 eV Total energy + Delta-G solvation = -4000.815886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.61202 -41.34598 -39.33884 -38.60261 -36.20722 -34.84640 -34.50378 -33.56022 -32.87554 -30.99164 -29.52715 -28.61438 -28.53970 -26.53004 -25.65907 -25.61992 -23.39294 -22.71214 -22.36425 -21.77277 -20.14900 -19.47252 -18.94628 -18.56736 -17.76145 -17.12411 -16.82467 -16.37103 -15.99891 -15.73389 -15.27570 -15.24929 -15.23122 -15.02787 -14.98802 -14.77724 -14.05522 -13.91460 -13.55446 -13.47566 -13.28376 -13.23434 -13.14003 -13.04417 -12.87400 -12.85599 -12.76457 -12.65080 -12.35888 -12.24851 -12.12289 -12.11665 -12.06883 -11.93951 -11.62778 -11.57134 -11.48966 -11.42677 -11.00859 -10.82491 -10.20112 -8.95974 -7.90681 -5.18008 -0.17702 0.24137 0.64083 1.48780 1.50994 1.56778 1.68702 1.87004 2.58620 2.79172 2.93866 3.42439 3.48028 3.55037 3.62137 3.67765 3.86990 3.91908 3.99849 4.27596 4.30203 4.31371 4.36055 4.41027 4.52172 4.57200 4.58584 4.60008 4.66222 4.71783 4.72224 4.72285 4.82748 4.89599 5.01465 5.09505 5.10614 5.17089 5.17820 5.21083 5.24806 5.33766 5.39921 5.53431 5.56923 5.66630 6.19633 6.32026 6.79256 7.03308 7.38365 8.14950 8.37761 9.32512 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.002734 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.548405 B =10237.593748 C =11656.569819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 C -0.151 4.151 4 C -0.157 4.157 5 N -0.108 5.108 6 N -0.060 5.060 7 N -0.273 5.273 8 C 0.111 3.889 9 C 0.621 3.379 10 O -0.539 6.539 11 N -0.687 5.687 12 C 0.158 3.842 13 H 0.098 0.902 14 C -0.122 4.122 15 C -0.108 4.108 16 C -0.127 4.127 17 C 0.174 3.826 18 H 0.039 0.961 19 N -0.735 5.735 20 C -0.234 4.234 21 H 0.073 0.927 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.966 3.034 25 H -0.279 1.279 26 H -0.297 1.297 27 H -0.280 1.280 28 C -0.122 4.122 29 N -0.254 5.254 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.061 0.939 39 H 0.413 0.587 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.039 0.961 46 H 0.373 0.627 47 H 0.249 0.751 48 H 0.063 0.937 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.581 5.096 -28.332 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.080 3.920 3 C -0.209 4.209 4 C -0.215 4.215 5 N -0.025 5.025 6 N -0.053 5.053 7 N -0.147 5.147 8 C -0.173 4.173 9 C 0.401 3.599 10 O -0.413 6.413 11 N -0.339 5.339 12 C 0.054 3.946 13 H 0.116 0.884 14 C -0.160 4.160 15 C -0.146 4.146 16 C -0.167 4.167 17 C 0.066 3.934 18 H 0.057 0.943 19 N -0.375 5.375 20 C -0.366 4.366 21 H 0.091 0.909 22 C -0.268 4.268 23 N -0.620 5.620 24 Si 0.796 3.204 25 H -0.206 1.206 26 H -0.223 1.223 27 H -0.206 1.206 28 C -0.160 4.160 29 N -0.108 5.108 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.205 0.795 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.769 5.171 -28.764 30.815 hybrid contribution 0.777 0.362 1.492 1.720 sum -8.993 5.533 -27.272 29.245 Atomic orbital electron populations 1.22312 0.89239 1.04325 1.05661 1.22243 0.97491 0.93990 0.78289 1.22185 1.02812 0.90039 1.05853 1.22308 1.02070 1.01650 0.95456 1.51362 1.28079 1.04697 1.18398 1.78848 1.08930 1.21794 0.95698 1.76179 1.20163 0.98322 1.19998 1.25287 1.00709 0.97260 0.94017 1.16135 0.79618 0.83127 0.81017 1.90803 1.44440 1.38364 1.67696 1.45964 1.50513 1.16323 1.21143 1.21098 1.00618 0.82796 0.90050 0.88439 1.21892 0.93776 0.98917 1.01454 1.21433 0.97203 1.00490 0.95450 1.22095 0.99197 0.99884 0.95500 1.20387 0.92874 0.95671 0.84485 0.94269 1.42585 1.54184 1.38592 1.02110 1.19544 1.18055 1.07859 0.91154 0.90909 1.25472 1.02927 1.02229 0.96133 1.69796 1.48888 1.43349 0.99952 0.85313 0.79146 0.79589 0.76367 1.20566 1.22332 1.20601 1.21992 0.97358 1.02377 0.94309 1.74923 1.20896 1.00059 1.14927 0.92135 0.85167 0.91608 0.91267 0.85351 0.91370 0.91598 0.85189 0.92025 0.74926 0.89115 0.91491 0.91011 0.92820 0.92701 0.94231 0.79471 0.94179 0.91787 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.66 71.98 0.62 -0.68 16 2 C 0.16 1.79 1.30 3.61 0.00 1.80 16 3 C -0.15 -1.11 7.90 71.98 0.57 -0.54 16 4 C -0.16 -1.25 8.66 71.98 0.62 -0.62 16 5 N -0.11 -2.35 3.72 -152.25 -0.57 -2.92 16 6 N -0.06 -1.57 12.21 37.02 0.45 -1.12 16 7 N -0.27 -8.18 12.26 -52.37 -0.64 -8.82 16 8 C 0.11 3.31 8.14 137.15 1.12 4.42 16 9 C 0.62 18.99 7.80 86.83 0.68 19.66 16 10 O -0.54 -18.49 16.76 -3.82 -0.06 -18.56 16 11 N -0.69 -19.47 4.23 -445.25 -1.88 -21.35 16 12 C 0.16 4.24 2.78 44.99 0.13 4.36 16 13 H 0.10 2.55 7.58 -2.39 -0.02 2.53 16 14 C -0.12 -3.01 5.60 30.60 0.17 -2.83 16 15 C -0.11 -2.90 5.77 30.59 0.18 -2.72 16 16 C -0.13 -4.32 5.50 30.59 0.17 -4.15 16 17 C 0.17 6.56 2.60 44.99 0.12 6.67 16 18 H 0.04 1.52 6.44 -2.39 -0.02 1.51 16 19 N -0.74 -36.25 5.12 -322.93 -1.65 -37.90 16 20 C -0.23 -12.92 9.93 84.03 0.83 -12.08 16 21 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 22 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 23 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 24 Si 0.97 46.58 29.55 68.60 2.03 48.61 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 27 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 28 C -0.12 -3.76 5.08 30.59 0.16 -3.60 16 29 N -0.25 -6.82 11.85 -52.32 -0.62 -7.44 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.13 0.05 8.14 -2.38 -0.02 0.03 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.41 12.07 6.62 -92.71 -0.61 11.45 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.49 7.60 -2.39 -0.02 1.47 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.37 19.75 7.80 -92.71 -0.72 19.03 16 47 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 48 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -72.55 397.74 2.79 -69.76 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.37 Total: 32.92 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 5.83 Total: 5.82 kcal Atomic # 7 Polarization: -133.92 SS G_CDS: -4.63 Total: -138.55 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.06 Total: -18.56 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -72.55 2.79 -69.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981102044.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.515 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds