Wall clock time and date at job start Tue Mar 31 2020 20:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 C 1.53001 * 109.46874 * 240.00323 * 2 1 3 5 5 N 1.46497 * 109.47384 * 120.00507 * 2 1 3 6 6 N 1.28724 * 125.31634 * 359.97301 * 5 2 1 7 7 N 1.28983 * 108.98458 * 180.02562 * 6 5 2 8 8 C 1.34185 * 107.25725 * 359.97438 * 7 6 5 9 9 C 1.47999 * 126.70237 * 180.02562 * 8 7 6 10 10 O 1.21537 * 120.00000 * 179.97438 * 9 8 7 11 11 N 1.34770 * 119.99893 * 359.97438 * 9 8 7 12 12 C 1.46509 * 120.00221 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46593 * 35.00082 * 12 11 9 14 14 C 1.52992 * 109.46998 * 275.00117 * 12 11 9 15 15 C 1.52999 * 109.47014 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47318 * 59.99730 * 15 14 12 17 17 C 1.52995 * 109.47124 * 300.00420 * 16 15 14 18 18 H 1.09004 * 109.46990 * 299.99323 * 17 16 15 19 19 N 1.46498 * 109.47311 * 179.97438 * 17 16 15 20 20 C 1.36938 * 120.00043 * 84.99617 * 19 17 16 21 21 H 1.08000 * 120.00148 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00350 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99827 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00312 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46958 * 90.00428 * 24 22 20 26 26 H 1.48502 * 109.47319 * 209.99913 * 24 22 20 27 27 H 1.48496 * 109.47134 * 330.00327 * 24 22 20 28 28 C 1.52998 * 109.47191 * 154.99715 * 12 11 9 29 29 N 1.28864 * 125.32135 * 180.02562 * 5 2 1 30 30 H 1.09003 * 109.46662 * 299.99936 * 1 2 3 31 31 H 1.08999 * 109.47241 * 59.99551 * 1 2 3 32 32 H 1.08997 * 109.47345 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47136 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47426 * 300.00336 * 3 2 1 35 35 H 1.08995 * 109.46990 * 60.00447 * 3 2 1 36 36 H 1.08997 * 109.47227 * 300.00186 * 4 2 1 37 37 H 1.08999 * 109.47083 * 60.00030 * 4 2 1 38 38 H 1.09003 * 109.47577 * 180.02562 * 4 2 1 39 39 H 0.96998 * 120.00324 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.47420 * 299.99458 * 14 12 11 41 41 H 1.08998 * 109.47455 * 59.99585 * 14 12 11 42 42 H 1.08999 * 109.47396 * 299.99643 * 15 14 12 43 43 H 1.09003 * 109.47205 * 179.97438 * 15 14 12 44 44 H 1.08996 * 109.47570 * 179.97438 * 16 15 14 45 45 H 1.09004 * 109.46635 * 59.99961 * 16 15 14 46 46 H 0.96998 * 120.00207 * 264.99758 * 19 17 16 47 47 H 0.96996 * 120.00194 * 179.97438 * 23 22 20 48 48 H 1.09003 * 109.47226 * 300.00187 * 28 12 11 49 49 H 1.08996 * 109.47376 * 60.00332 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 1.2762 -1.2162 2.1071 7 7 2.0308 -1.7390 3.0131 8 6 3.3029 -1.5263 2.6431 9 6 4.5190 -1.9486 3.3733 10 8 5.6182 -1.6904 2.9238 11 7 4.4074 -2.6194 4.5369 12 6 5.6111 -3.0379 5.2596 13 1 6.3902 -2.2861 5.1338 14 6 6.0999 -4.3769 4.7037 15 6 7.3574 -4.8137 5.4580 16 6 7.0326 -4.9669 6.9453 17 6 6.5437 -3.6279 7.5011 18 1 7.3227 -2.8760 7.3749 19 7 6.2322 -3.7747 8.9250 20 6 7.2254 -3.6506 9.8595 21 1 8.2383 -3.4441 9.5469 22 6 6.9303 -3.7902 11.2087 23 7 5.6960 -4.0424 11.5898 24 14 8.2853 -3.6217 12.4835 25 1 8.3915 -2.2026 12.9083 26 1 7.9653 -4.4681 13.6609 27 1 9.5761 -4.0601 11.8947 28 6 5.2857 -3.1913 6.7467 29 7 3.2580 -0.8663 1.5010 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1392 38 1 3.1300 -0.7217 -1.2492 39 1 3.5301 -2.8251 4.8959 40 1 5.3209 -5.1288 4.8295 41 1 6.3317 -4.2677 3.6443 42 1 8.1364 -4.0618 5.3318 43 1 7.7054 -5.7678 5.0623 44 1 7.9283 -5.2785 7.4826 45 1 6.2536 -5.7188 7.0714 46 1 5.3224 -3.9598 9.2059 47 1 5.4898 -4.1403 12.5325 48 1 4.9375 -2.2373 7.1427 49 1 4.5067 -3.9431 6.8725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981102046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:26 Heat of formation + Delta-G solvation = 86.862734 kcal Electronic energy + Delta-G solvation = -28967.015294 eV Core-core repulsion = 24967.028146 eV Total energy + Delta-G solvation = -3999.987149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.70956 -40.00542 -38.21540 -37.83376 -34.80141 -33.83182 -33.40346 -32.66728 -31.10904 -29.50546 -28.25010 -28.20001 -27.79464 -25.51666 -24.78556 -23.69762 -22.10180 -21.58693 -21.14459 -20.40463 -19.54406 -18.20523 -17.69175 -17.20846 -16.85891 -16.25960 -15.23599 -15.11320 -14.82106 -14.62021 -14.38569 -14.30738 -14.02123 -13.77200 -13.58157 -13.49127 -13.15236 -13.13487 -13.00918 -12.70931 -12.52417 -12.49069 -12.18189 -12.13698 -12.06102 -11.78235 -11.34331 -11.28805 -10.98305 -10.95996 -10.86831 -10.70769 -10.65092 -10.53119 -10.34215 -10.21474 -10.12908 -9.75830 -9.61301 -9.07480 -8.84840 -6.93774 -5.74383 -3.02978 0.75578 1.23854 1.32805 2.66937 2.97128 3.45609 3.50938 3.52358 3.56559 3.81175 3.86748 3.97999 4.30712 4.59935 4.76942 4.79137 4.79943 4.93939 4.95956 4.99858 5.01572 5.02430 5.08626 5.26665 5.32662 5.37611 5.44327 5.51678 5.56064 5.61794 5.69289 5.73530 5.79173 5.88882 5.98054 6.02968 6.15277 6.25502 6.34030 6.49513 6.54696 6.61954 6.74760 6.98879 7.14833 7.30339 7.73219 7.87023 8.01294 8.44298 9.55463 10.12895 10.47625 11.48298 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.002002 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.891857 B =13984.474084 C =14528.094896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.160 4.160 5 N -0.126 5.126 6 N -0.055 5.055 7 N -0.255 5.255 8 C 0.128 3.872 9 C 0.616 3.384 10 O -0.510 6.510 11 N -0.698 5.698 12 C 0.150 3.850 13 H 0.093 0.907 14 C -0.126 4.126 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.184 3.816 18 H 0.049 0.951 19 N -0.724 5.724 20 C -0.236 4.236 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.130 4.130 29 N -0.246 5.246 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.410 0.590 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.071 0.929 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 7.453 -28.365 31.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.040 5.040 6 N -0.048 5.048 7 N -0.130 5.130 8 C -0.157 4.157 9 C 0.395 3.605 10 O -0.381 6.381 11 N -0.349 5.349 12 C 0.047 3.953 13 H 0.111 0.889 14 C -0.164 4.164 15 C -0.153 4.153 16 C -0.178 4.178 17 C 0.073 3.927 18 H 0.067 0.933 19 N -0.364 5.364 20 C -0.368 4.368 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.169 4.169 29 N -0.099 5.099 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.246 0.754 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.853 7.751 -28.691 31.639 hybrid contribution 0.338 -0.181 1.116 1.180 sum -10.515 7.570 -27.575 30.467 Atomic orbital electron populations 1.22115 0.89725 1.04787 1.04527 1.21536 0.96666 0.92897 0.79329 1.22268 1.03579 0.91809 1.04276 1.22265 1.03562 1.01129 0.94931 1.50763 1.00945 1.34218 1.18113 1.78890 1.21587 1.08806 0.95504 1.76155 1.00101 1.17486 1.19256 1.25410 0.94641 1.02214 0.93392 1.16118 0.84559 0.78764 0.81068 1.90852 1.25215 1.55227 1.66856 1.45916 1.11638 1.55838 1.21503 1.21190 0.85956 0.96877 0.91317 0.88935 1.21908 0.98584 0.96324 0.99621 1.21483 0.96592 1.00715 0.96467 1.22302 1.01674 1.00543 0.93275 1.20102 0.93358 0.94171 0.85023 0.93263 1.42399 1.09363 1.85589 0.99082 1.19243 0.90070 1.40567 0.86886 0.91129 1.24741 0.96406 1.02852 0.97069 1.69659 1.17394 1.55845 1.15275 0.86203 0.81152 0.77427 0.81495 1.21774 1.21844 1.20767 1.22124 1.00498 1.02496 0.91810 1.74988 1.02682 1.17001 1.15222 0.90420 0.89030 0.90455 0.90169 0.88898 0.91207 0.91260 0.88898 0.90182 0.75435 0.91742 0.92044 0.92070 0.92391 0.91824 0.92571 0.78279 0.93558 0.91042 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 7.90 37.16 0.29 -0.29 16 2 C 0.18 1.01 1.30 -131.82 -0.17 0.84 16 3 C -0.16 -0.73 8.66 37.16 0.32 -0.41 16 4 C -0.16 -0.70 8.66 37.16 0.32 -0.38 16 5 N -0.13 -1.27 3.72 0.52 0.00 -1.27 16 6 N -0.06 -0.64 12.21 60.35 0.74 0.10 16 7 N -0.26 -3.35 12.26 32.10 0.39 -2.96 16 8 C 0.13 1.75 8.14 -156.24 -1.27 0.48 16 9 C 0.62 9.03 7.80 -12.26 -0.10 8.94 16 10 O -0.51 -8.84 16.76 5.33 0.09 -8.75 16 11 N -0.70 -9.17 5.07 -54.70 -0.28 -9.45 16 12 C 0.15 2.13 2.45 -67.93 -0.17 1.97 16 13 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 14 C -0.13 -1.70 5.49 -26.74 -0.15 -1.85 16 15 C -0.11 -1.62 5.92 -26.73 -0.16 -1.78 16 16 C -0.14 -2.40 5.50 -26.73 -0.15 -2.55 16 17 C 0.18 3.55 2.77 -67.91 -0.19 3.37 16 18 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 19 N -0.72 -17.82 5.12 -53.40 -0.27 -18.10 16 20 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 24 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C -0.13 -2.07 4.86 -26.71 -0.13 -2.20 16 29 N -0.25 -3.13 11.85 32.11 0.38 -2.75 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.41 4.79 8.35 -40.82 -0.34 4.45 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 402.17 15.07 6.06 6.06 Total: -1.00 -33.43 402.17 -7.18 -40.60 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.20 Total: 7.53 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.78 Total: -1.05 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 1.69 Total: -61.82 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.43 -7.18 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981102046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.464 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds