Wall clock time and date at job start Tue Mar 31 2020 20:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 C 1.53001 * 109.46874 * 240.00323 * 2 1 3 5 5 N 1.46497 * 109.47384 * 120.00507 * 2 1 3 6 6 N 1.28724 * 125.31634 * 359.97301 * 5 2 1 7 7 N 1.28983 * 108.98458 * 180.02562 * 6 5 2 8 8 C 1.34185 * 107.25725 * 359.97438 * 7 6 5 9 9 C 1.47999 * 126.70237 * 180.02562 * 8 7 6 10 10 O 1.21537 * 120.00000 * 179.97438 * 9 8 7 11 11 N 1.34770 * 119.99893 * 359.97438 * 9 8 7 12 12 C 1.46509 * 120.00221 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46593 * 35.00082 * 12 11 9 14 14 C 1.52992 * 109.46998 * 275.00117 * 12 11 9 15 15 C 1.52999 * 109.47014 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47318 * 59.99730 * 15 14 12 17 17 C 1.52995 * 109.47124 * 300.00420 * 16 15 14 18 18 H 1.09004 * 109.46990 * 299.99323 * 17 16 15 19 19 N 1.46498 * 109.47311 * 179.97438 * 17 16 15 20 20 C 1.36938 * 120.00043 * 84.99617 * 19 17 16 21 21 H 1.08000 * 120.00148 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00350 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99827 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00312 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46958 * 90.00428 * 24 22 20 26 26 H 1.48502 * 109.47319 * 209.99913 * 24 22 20 27 27 H 1.48496 * 109.47134 * 330.00327 * 24 22 20 28 28 C 1.52998 * 109.47191 * 154.99715 * 12 11 9 29 29 N 1.28864 * 125.32135 * 180.02562 * 5 2 1 30 30 H 1.09003 * 109.46662 * 299.99936 * 1 2 3 31 31 H 1.08999 * 109.47241 * 59.99551 * 1 2 3 32 32 H 1.08997 * 109.47345 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47136 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47426 * 300.00336 * 3 2 1 35 35 H 1.08995 * 109.46990 * 60.00447 * 3 2 1 36 36 H 1.08997 * 109.47227 * 300.00186 * 4 2 1 37 37 H 1.08999 * 109.47083 * 60.00030 * 4 2 1 38 38 H 1.09003 * 109.47577 * 180.02562 * 4 2 1 39 39 H 0.96998 * 120.00324 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.47420 * 299.99458 * 14 12 11 41 41 H 1.08998 * 109.47455 * 59.99585 * 14 12 11 42 42 H 1.08999 * 109.47396 * 299.99643 * 15 14 12 43 43 H 1.09003 * 109.47205 * 179.97438 * 15 14 12 44 44 H 1.08996 * 109.47570 * 179.97438 * 16 15 14 45 45 H 1.09004 * 109.46635 * 59.99961 * 16 15 14 46 46 H 0.96998 * 120.00207 * 264.99758 * 19 17 16 47 47 H 0.96996 * 120.00194 * 179.97438 * 23 22 20 48 48 H 1.09003 * 109.47226 * 300.00187 * 28 12 11 49 49 H 1.08996 * 109.47376 * 60.00332 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 1.2762 -1.2162 2.1071 7 7 2.0308 -1.7390 3.0131 8 6 3.3029 -1.5263 2.6431 9 6 4.5190 -1.9486 3.3733 10 8 5.6182 -1.6904 2.9238 11 7 4.4074 -2.6194 4.5369 12 6 5.6111 -3.0379 5.2596 13 1 6.3902 -2.2861 5.1338 14 6 6.0999 -4.3769 4.7037 15 6 7.3574 -4.8137 5.4580 16 6 7.0326 -4.9669 6.9453 17 6 6.5437 -3.6279 7.5011 18 1 7.3227 -2.8760 7.3749 19 7 6.2322 -3.7747 8.9250 20 6 7.2254 -3.6506 9.8595 21 1 8.2383 -3.4441 9.5469 22 6 6.9303 -3.7902 11.2087 23 7 5.6960 -4.0424 11.5898 24 14 8.2853 -3.6217 12.4835 25 1 8.3915 -2.2026 12.9083 26 1 7.9653 -4.4681 13.6609 27 1 9.5761 -4.0601 11.8947 28 6 5.2857 -3.1913 6.7467 29 7 3.2580 -0.8663 1.5010 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1392 38 1 3.1300 -0.7217 -1.2492 39 1 3.5301 -2.8251 4.8959 40 1 5.3209 -5.1288 4.8295 41 1 6.3317 -4.2677 3.6443 42 1 8.1364 -4.0618 5.3318 43 1 7.7054 -5.7678 5.0623 44 1 7.9283 -5.2785 7.4826 45 1 6.2536 -5.7188 7.0714 46 1 5.3224 -3.9598 9.2059 47 1 5.4898 -4.1403 12.5325 48 1 4.9375 -2.2373 7.1427 49 1 4.5067 -3.9431 6.8725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981102046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:25 Heat of formation + Delta-G solvation = 63.598347 kcal Electronic energy + Delta-G solvation = -28968.024114 eV Core-core repulsion = 24967.028146 eV Total energy + Delta-G solvation = -4000.995968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.62051 -41.20444 -39.35233 -38.60784 -36.33870 -35.04461 -34.63362 -33.60448 -32.89826 -30.81426 -29.46792 -28.59667 -28.54059 -26.49848 -25.67360 -25.62300 -23.34506 -22.90096 -22.00250 -21.51087 -20.91321 -19.45598 -18.79998 -18.57043 -17.76016 -17.53285 -16.64100 -16.23231 -16.07334 -15.50150 -15.29120 -15.27828 -15.21262 -15.09844 -14.98465 -14.83775 -14.25065 -14.05161 -13.62476 -13.48127 -13.40827 -13.29150 -13.23263 -12.88544 -12.85128 -12.82524 -12.64987 -12.37860 -12.27414 -12.17114 -12.12661 -12.11775 -12.03181 -11.96146 -11.77989 -11.66213 -11.49475 -11.38610 -11.18052 -10.86064 -10.24533 -8.97781 -7.91812 -5.19545 -0.18530 0.23070 0.62257 1.48454 1.49611 1.57845 1.63060 1.84926 2.57703 2.76074 2.92595 3.41489 3.48031 3.55355 3.61225 3.64031 3.85103 3.96698 4.03929 4.24500 4.28953 4.32059 4.39974 4.42457 4.52308 4.52363 4.58755 4.59165 4.60148 4.66512 4.72495 4.72832 4.78065 4.97507 5.01893 5.09657 5.10779 5.16722 5.17242 5.21810 5.24515 5.32192 5.37561 5.52693 5.55284 5.67887 6.19022 6.31078 6.80069 7.01992 7.37013 8.13218 8.36515 9.31596 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.002002 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.891857 B =13984.474084 C =14528.094896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.157 4.157 5 N -0.109 5.109 6 N -0.058 5.058 7 N -0.268 5.268 8 C 0.113 3.887 9 C 0.620 3.380 10 O -0.540 6.540 11 N -0.687 5.687 12 C 0.160 3.840 13 H 0.082 0.918 14 C -0.119 4.119 15 C -0.105 4.105 16 C -0.128 4.128 17 C 0.178 3.822 18 H 0.041 0.959 19 N -0.736 5.736 20 C -0.235 4.235 21 H 0.074 0.926 22 C -0.078 4.078 23 N -0.969 5.969 24 Si 0.969 3.031 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.270 1.270 28 C -0.117 4.117 29 N -0.257 5.257 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.129 0.871 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.063 0.937 39 H 0.418 0.582 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.053 0.947 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.063 0.937 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 7.911 -30.773 33.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 C -0.216 4.216 4 C -0.215 4.215 5 N -0.025 5.025 6 N -0.050 5.050 7 N -0.142 5.142 8 C -0.171 4.171 9 C 0.400 3.600 10 O -0.414 6.414 11 N -0.338 5.338 12 C 0.056 3.944 13 H 0.100 0.900 14 C -0.157 4.157 15 C -0.143 4.143 16 C -0.168 4.168 17 C 0.069 3.931 18 H 0.059 0.941 19 N -0.375 5.375 20 C -0.367 4.367 21 H 0.092 0.908 22 C -0.270 4.270 23 N -0.620 5.620 24 Si 0.799 3.201 25 H -0.216 1.216 26 H -0.223 1.223 27 H -0.195 1.195 28 C -0.156 4.156 29 N -0.111 5.111 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.256 0.744 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.357 8.207 -31.138 34.146 hybrid contribution 0.432 -0.246 1.703 1.774 sum -10.925 7.961 -29.436 32.391 Atomic orbital electron populations 1.22183 0.87933 1.04807 1.05892 1.22230 0.98083 0.93364 0.78269 1.22314 1.02552 0.91095 1.05677 1.22309 1.02553 1.01164 0.95504 1.51338 1.00032 1.32791 1.18388 1.78822 1.21503 1.08990 0.95711 1.76118 0.99866 1.18160 1.20029 1.25183 0.94508 1.03373 0.94007 1.16174 0.84492 0.78274 0.81062 1.90830 1.26378 1.56527 1.67709 1.45754 1.11735 1.55272 1.21022 1.20986 0.86037 0.97264 0.90160 0.89994 1.21851 0.98492 0.95837 0.99561 1.21406 0.97019 1.01956 0.93943 1.22109 1.00511 0.98825 0.95328 1.20316 0.94752 0.95094 0.82938 0.94122 1.42583 1.08347 1.85649 1.00963 1.19596 0.90773 1.38655 0.87631 0.90790 1.25515 0.98501 1.03870 0.99082 1.69808 1.19219 1.57840 1.15135 0.85197 0.79040 0.77071 0.78826 1.21634 1.22325 1.19514 1.21911 0.98959 1.02174 0.92536 1.74952 1.04052 1.17086 1.15023 0.91252 0.85438 0.91094 0.91783 0.85224 0.92064 0.91883 0.85255 0.91763 0.74425 0.90638 0.91583 0.91894 0.90363 0.93787 0.92824 0.79464 0.94147 0.91866 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 7.90 71.98 0.57 -0.21 16 2 C 0.16 1.53 1.30 3.60 0.00 1.53 16 3 C -0.16 -1.13 8.66 71.98 0.62 -0.50 16 4 C -0.16 -1.04 8.66 71.98 0.62 -0.41 16 5 N -0.11 -2.12 3.72 -152.26 -0.57 -2.68 16 6 N -0.06 -1.31 12.21 37.02 0.45 -0.86 16 7 N -0.27 -6.95 12.26 -52.36 -0.64 -7.59 16 8 C 0.11 3.09 8.14 137.15 1.12 4.20 16 9 C 0.62 18.05 7.80 86.83 0.68 18.73 16 10 O -0.54 -18.73 16.76 -3.83 -0.06 -18.79 16 11 N -0.69 -17.61 5.07 -445.27 -2.26 -19.87 16 12 C 0.16 4.40 2.45 44.99 0.11 4.51 16 13 H 0.08 2.49 7.58 -2.39 -0.02 2.48 16 14 C -0.12 -3.01 5.49 30.59 0.17 -2.84 16 15 C -0.10 -2.79 5.92 30.59 0.18 -2.61 16 16 C -0.13 -4.37 5.50 30.59 0.17 -4.20 16 17 C 0.18 6.87 2.77 45.01 0.12 6.99 16 18 H 0.04 1.64 8.08 -2.38 -0.02 1.62 16 19 N -0.74 -36.70 5.12 -322.87 -1.65 -38.36 16 20 C -0.23 -13.02 9.93 84.03 0.83 -12.18 16 21 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 22 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 23 N -0.97 -59.45 13.06 21.65 0.28 -59.17 16 24 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 28 C -0.12 -3.68 4.86 30.61 0.15 -3.53 16 29 N -0.26 -6.48 11.85 -52.32 -0.62 -7.10 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.42 9.45 8.35 -92.71 -0.77 8.68 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 46 H 0.37 19.91 7.80 -92.71 -0.72 19.19 16 47 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 48 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -73.21 402.17 2.23 -70.98 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.54 Total: 29.35 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.82 Total: 5.46 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -5.01 Total: -135.63 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.06 Total: -18.79 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.21 2.23 -70.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981102046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.577 kcal (2) G-P(sol) polarization free energy of solvation -73.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds