Wall clock time and date at job start Tue Mar 31 2020 19:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00363 * 2 1 4 4 C 1.52997 * 109.47589 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47240 * 180.02562 * 4 3 2 6 6 N 1.28447 * 125.19050 * 272.52959 * 5 4 3 7 7 C 1.30861 * 110.92625 * 180.28062 * 6 5 4 8 8 C 1.39679 * 107.85853 * 359.71668 * 7 6 5 9 9 C 1.36600 * 125.18971 * 92.31969 * 5 4 3 10 10 C 1.47163 * 126.88011 * 359.97438 * 9 5 4 11 11 O 1.21628 * 120.00279 * 4.60248 * 10 9 5 12 12 N 1.34776 * 119.99411 * 184.59363 * 10 9 5 13 13 C 1.46504 * 119.99814 * 174.56112 * 12 10 9 14 14 H 1.08999 * 109.47066 * 35.00344 * 13 12 10 15 15 C 1.53004 * 109.47305 * 275.00556 * 13 12 10 16 16 C 1.52999 * 109.46945 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47116 * 59.99777 * 16 15 13 18 18 C 1.52996 * 109.47105 * 299.99594 * 17 16 15 19 19 H 1.09003 * 109.46737 * 179.97438 * 18 17 16 20 20 N 1.46491 * 109.47263 * 299.99901 * 18 17 16 21 21 C 1.36938 * 120.00325 * 275.00052 * 20 18 17 22 22 H 1.08000 * 120.00072 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99898 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99965 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 120.00223 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47058 * 89.99817 * 25 23 21 27 27 H 1.48503 * 109.46821 * 209.99883 * 25 23 21 28 28 H 1.48497 * 109.46829 * 329.99886 * 25 23 21 29 29 C 1.52996 * 109.46985 * 60.00535 * 18 17 16 30 30 H 1.09003 * 109.47681 * 59.99673 * 1 2 3 31 31 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47551 * 299.99444 * 1 2 3 33 33 H 1.09004 * 109.46551 * 60.00081 * 3 2 1 34 34 H 1.09000 * 109.47263 * 300.00695 * 3 2 1 35 35 H 1.09010 * 109.46622 * 60.00359 * 4 3 2 36 36 H 1.09000 * 109.47438 * 300.00652 * 4 3 2 37 37 H 1.07994 * 126.07333 * 179.67802 * 7 6 5 38 38 H 1.08004 * 127.31821 * 179.97438 * 8 7 6 39 39 H 0.97003 * 120.00514 * 354.56045 * 12 10 9 40 40 H 1.09003 * 109.46629 * 299.99446 * 15 13 12 41 41 H 1.08993 * 109.46778 * 59.99630 * 15 13 12 42 42 H 1.09002 * 109.46910 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.47313 * 299.99718 * 16 15 13 44 44 H 1.08997 * 109.46709 * 179.97438 * 17 16 15 45 45 H 1.09007 * 109.46940 * 60.00100 * 17 16 15 46 46 H 0.96999 * 119.99801 * 95.00169 * 20 18 17 47 47 H 0.96997 * 119.99750 * 179.97438 * 24 23 21 48 48 H 1.08999 * 109.47484 * 59.99621 * 29 18 17 49 49 H 1.09002 * 109.47093 * 179.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 7 4.3905 3.2183 -1.0471 7 6 4.9247 4.3686 -0.7247 8 6 5.0138 4.4242 0.6681 9 6 4.4923 3.2234 1.1171 10 6 4.3587 2.7864 2.5159 11 8 3.9622 1.6643 2.7673 12 7 4.6758 3.6294 3.5184 13 6 4.4310 3.2389 4.9091 14 1 4.5995 2.1678 5.0207 15 6 2.9851 3.5695 5.2847 16 6 2.7293 3.1610 6.7368 17 6 3.6830 3.9254 7.6572 18 6 5.1287 3.5946 7.2816 19 1 5.8081 4.1396 7.9371 20 7 5.3550 2.1551 7.4310 21 6 5.6928 1.6382 8.6533 22 1 5.7920 2.2919 9.5073 23 6 5.9067 0.2740 8.7950 24 7 6.2318 -0.2227 9.9697 25 14 5.7345 -0.8568 7.3180 26 1 7.0448 -0.9746 6.6294 27 1 5.2911 -2.1995 7.7718 28 1 4.7305 -0.2950 6.3790 29 6 5.3846 4.0032 5.8296 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 3.8574 0.6435 -0.8892 36 1 3.8567 0.6438 0.8908 37 1 5.2411 5.1381 -1.4133 38 1 5.4066 5.2323 1.2673 39 1 5.0662 4.4948 3.3193 40 1 2.8166 4.6406 5.1732 41 1 2.3058 3.0246 4.6293 42 1 1.6993 3.3969 7.0046 43 1 2.8977 2.0898 6.8480 44 1 3.5004 3.6346 8.6917 45 1 3.5145 4.9966 7.5461 46 1 5.2656 1.5679 6.6642 47 1 6.3809 -1.1760 10.0687 48 1 5.2162 5.0744 5.7184 49 1 6.4148 3.7680 5.5621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981160066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:25 Heat of formation + Delta-G solvation = 6.624030 kcal Electronic energy + Delta-G solvation = -30038.873551 eV Core-core repulsion = 26003.114240 eV Total energy + Delta-G solvation = -4035.759311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.83900 -39.92327 -38.32067 -38.11343 -34.93651 -34.05590 -33.16859 -31.41890 -31.15105 -29.63151 -29.29956 -28.43681 -26.64303 -24.26633 -23.55761 -23.23595 -22.23913 -21.96052 -21.07309 -20.22846 -18.89121 -18.00136 -17.75234 -17.03306 -16.42207 -16.37330 -16.12010 -15.76341 -15.13651 -14.99315 -14.66432 -14.54557 -14.34811 -14.07080 -13.99918 -13.81575 -13.67756 -13.16873 -12.79142 -12.55658 -12.42688 -12.26715 -12.23825 -11.86965 -11.67519 -11.65505 -11.11883 -11.08792 -10.90106 -10.78270 -10.40640 -10.33087 -10.19196 -10.09490 -10.04341 -9.72424 -9.55219 -9.53126 -9.36957 -9.06018 -8.85171 -7.25673 -5.75660 -3.11041 0.99386 1.93504 2.32667 2.95892 3.03981 3.41745 3.47440 3.50834 3.60197 4.21461 4.36175 4.53557 4.61872 4.65022 4.82697 4.89334 4.91307 4.99427 5.02515 5.03504 5.19935 5.29563 5.33073 5.34730 5.37729 5.39277 5.49396 5.51705 5.55606 5.65149 5.72987 5.91383 5.93492 6.00986 6.15658 6.17246 6.26763 6.35228 6.38494 6.47349 6.64101 6.69630 6.70565 6.86275 6.95249 7.31320 7.75693 8.00339 8.01428 8.43436 9.21916 9.94860 10.13682 11.42575 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.003335 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.567386 B = 8394.016939 C = 9307.758934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.056 3.944 4 C 0.115 3.885 5 N -0.255 5.255 6 N -0.278 5.278 7 C -0.001 4.001 8 C -0.189 4.189 9 C -0.030 4.030 10 C 0.585 3.415 11 O -0.531 6.531 12 N -0.707 5.707 13 C 0.144 3.856 14 H 0.095 0.905 15 C -0.122 4.122 16 C -0.111 4.111 17 C -0.136 4.136 18 C 0.185 3.815 19 H 0.062 0.938 20 N -0.746 5.746 21 C -0.242 4.242 22 H 0.091 0.909 23 C 0.007 3.993 24 N -0.934 5.934 25 Si 0.876 3.124 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.274 1.274 29 C -0.132 4.132 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.188 0.812 38 H 0.162 0.838 39 H 0.400 0.600 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.068 0.932 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 11.945 -21.873 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.021 4.021 4 C -0.005 4.005 5 N -0.043 5.043 6 N -0.110 5.110 7 C -0.177 4.177 8 C -0.218 4.218 9 C -0.159 4.159 10 C 0.369 3.631 11 O -0.408 6.408 12 N -0.357 5.357 13 C 0.041 3.959 14 H 0.113 0.887 15 C -0.160 4.160 16 C -0.149 4.149 17 C -0.176 4.176 18 C 0.075 3.925 19 H 0.080 0.920 20 N -0.390 5.390 21 C -0.372 4.372 22 H 0.109 0.891 23 C -0.189 4.189 24 N -0.582 5.582 25 Si 0.706 3.294 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.200 1.200 29 C -0.171 4.171 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.205 0.795 38 H 0.180 0.820 39 H 0.235 0.765 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.195 0.805 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.539 10.111 -22.341 25.966 hybrid contribution 0.084 0.256 -0.490 0.559 sum -8.455 10.367 -22.831 26.462 Atomic orbital electron populations 1.22789 0.80015 1.03230 1.00217 1.87810 1.20467 1.26354 1.95508 1.22607 0.92472 0.85841 1.01227 1.21936 0.92594 0.78336 1.07683 1.45514 1.42590 1.14330 1.01913 1.73232 1.17814 1.06240 1.13728 1.23600 1.03354 0.95727 0.95000 1.22274 1.06328 0.97510 0.95688 1.21562 1.09435 0.94978 0.89886 1.16967 0.78113 0.84957 0.83037 1.90841 1.46561 1.19056 1.84334 1.45853 1.63680 1.19879 1.06307 1.21166 0.95397 1.01531 0.77840 0.88745 1.21877 0.95537 1.00782 0.97832 1.21375 0.98470 1.02126 0.92902 1.22162 0.97544 0.97746 1.00175 1.20124 0.94106 0.86291 0.91949 0.92027 1.42879 1.84670 1.02250 1.09229 1.19056 1.38897 0.92133 0.87118 0.89132 1.24634 1.01584 0.96549 0.96103 1.69697 1.54082 1.12511 1.21880 0.86682 0.78137 0.81229 0.83312 1.21141 1.21704 1.19991 1.22138 0.99044 0.99337 0.96533 0.93947 0.89044 0.93671 0.92430 0.92559 0.87441 0.85119 0.79523 0.82018 0.76485 0.92191 0.92418 0.92806 0.90845 0.91390 0.93405 0.80501 0.93092 0.91327 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.46 10.70 -35.23 -0.38 -4.83 16 3 C 0.06 0.62 6.26 37.16 0.23 0.85 16 4 C 0.11 1.33 6.28 -4.04 -0.03 1.30 16 5 N -0.25 -3.08 3.35 -57.14 -0.19 -3.27 16 6 N -0.28 -3.20 11.90 30.59 0.36 -2.84 16 7 C 0.00 -0.01 12.03 -17.43 -0.21 -0.21 16 8 C -0.19 -1.70 10.50 -38.99 -0.41 -2.11 16 9 C -0.03 -0.36 6.96 -82.06 -0.57 -0.93 16 10 C 0.58 8.07 7.76 -12.64 -0.10 7.97 16 11 O -0.53 -9.23 14.25 5.25 0.07 -9.16 16 12 N -0.71 -8.34 5.07 -54.96 -0.28 -8.62 16 13 C 0.14 2.08 2.33 -67.92 -0.16 1.92 16 14 H 0.09 1.75 5.87 -51.93 -0.30 1.44 16 15 C -0.12 -1.68 5.50 -26.73 -0.15 -1.83 16 16 C -0.11 -1.74 5.77 -26.73 -0.15 -1.90 16 17 C -0.14 -2.19 5.61 -26.73 -0.15 -2.34 16 18 C 0.19 3.26 3.10 -67.94 -0.21 3.05 16 19 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 20 N -0.75 -16.92 4.08 -53.43 -0.22 -17.14 16 21 C -0.24 -6.65 10.41 -15.06 -0.16 -6.81 16 22 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 23 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 24 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 25 Si 0.88 22.68 27.74 -169.99 -4.71 17.96 16 26 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 28 H -0.27 -6.85 6.52 56.52 0.37 -6.48 16 29 C -0.13 -1.81 5.08 -26.73 -0.14 -1.95 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.13 1.75 6.09 -51.93 -0.32 1.43 16 37 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.16 0.92 7.58 -52.48 -0.40 0.53 16 39 H 0.40 3.37 7.64 -40.82 -0.31 3.06 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.40 7.60 -51.93 -0.39 1.00 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 46 H 0.36 8.34 3.92 -40.82 -0.16 8.18 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -34.32 392.94 -7.64 -41.96 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -7.82 Total: 9.99 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.18 Total: -1.46 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.45 Total: -60.38 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.30 Total: -13.99 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.32 -7.64 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981160066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.583 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds