Wall clock time and date at job start Tue Mar 31 2020 19:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00363 * 2 1 4 4 C 1.52997 * 109.47589 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47240 * 180.02562 * 4 3 2 6 6 N 1.28447 * 125.19050 * 272.52959 * 5 4 3 7 7 C 1.30861 * 110.92625 * 180.28062 * 6 5 4 8 8 C 1.39679 * 107.85853 * 359.71668 * 7 6 5 9 9 C 1.36600 * 125.18971 * 92.31969 * 5 4 3 10 10 C 1.47163 * 126.88011 * 359.97438 * 9 5 4 11 11 O 1.21628 * 120.00279 * 4.60248 * 10 9 5 12 12 N 1.34776 * 119.99411 * 184.59363 * 10 9 5 13 13 C 1.46504 * 119.99814 * 174.56112 * 12 10 9 14 14 H 1.08999 * 109.47066 * 35.00344 * 13 12 10 15 15 C 1.53004 * 109.47305 * 275.00556 * 13 12 10 16 16 C 1.52999 * 109.46945 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47116 * 59.99777 * 16 15 13 18 18 C 1.52996 * 109.47105 * 299.99594 * 17 16 15 19 19 H 1.09003 * 109.46737 * 179.97438 * 18 17 16 20 20 N 1.46491 * 109.47263 * 299.99901 * 18 17 16 21 21 C 1.36938 * 120.00325 * 275.00052 * 20 18 17 22 22 H 1.08000 * 120.00072 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99898 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99965 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 120.00223 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47058 * 89.99817 * 25 23 21 27 27 H 1.48503 * 109.46821 * 209.99883 * 25 23 21 28 28 H 1.48497 * 109.46829 * 329.99886 * 25 23 21 29 29 C 1.52996 * 109.46985 * 60.00535 * 18 17 16 30 30 H 1.09003 * 109.47681 * 59.99673 * 1 2 3 31 31 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47551 * 299.99444 * 1 2 3 33 33 H 1.09004 * 109.46551 * 60.00081 * 3 2 1 34 34 H 1.09000 * 109.47263 * 300.00695 * 3 2 1 35 35 H 1.09010 * 109.46622 * 60.00359 * 4 3 2 36 36 H 1.09000 * 109.47438 * 300.00652 * 4 3 2 37 37 H 1.07994 * 126.07333 * 179.67802 * 7 6 5 38 38 H 1.08004 * 127.31821 * 179.97438 * 8 7 6 39 39 H 0.97003 * 120.00514 * 354.56045 * 12 10 9 40 40 H 1.09003 * 109.46629 * 299.99446 * 15 13 12 41 41 H 1.08993 * 109.46778 * 59.99630 * 15 13 12 42 42 H 1.09002 * 109.46910 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.47313 * 299.99718 * 16 15 13 44 44 H 1.08997 * 109.46709 * 179.97438 * 17 16 15 45 45 H 1.09007 * 109.46940 * 60.00100 * 17 16 15 46 46 H 0.96999 * 119.99801 * 95.00169 * 20 18 17 47 47 H 0.96997 * 119.99750 * 179.97438 * 24 23 21 48 48 H 1.08999 * 109.47484 * 59.99621 * 29 18 17 49 49 H 1.09002 * 109.47093 * 179.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 7 4.3905 3.2183 -1.0471 7 6 4.9247 4.3686 -0.7247 8 6 5.0138 4.4242 0.6681 9 6 4.4923 3.2234 1.1171 10 6 4.3587 2.7864 2.5159 11 8 3.9622 1.6643 2.7673 12 7 4.6758 3.6294 3.5184 13 6 4.4310 3.2389 4.9091 14 1 4.5995 2.1678 5.0207 15 6 2.9851 3.5695 5.2847 16 6 2.7293 3.1610 6.7368 17 6 3.6830 3.9254 7.6572 18 6 5.1287 3.5946 7.2816 19 1 5.8081 4.1396 7.9371 20 7 5.3550 2.1551 7.4310 21 6 5.6928 1.6382 8.6533 22 1 5.7920 2.2919 9.5073 23 6 5.9067 0.2740 8.7950 24 7 6.2318 -0.2227 9.9697 25 14 5.7345 -0.8568 7.3180 26 1 7.0448 -0.9746 6.6294 27 1 5.2911 -2.1995 7.7718 28 1 4.7305 -0.2950 6.3790 29 6 5.3846 4.0032 5.8296 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 3.8574 0.6435 -0.8892 36 1 3.8567 0.6438 0.8908 37 1 5.2411 5.1381 -1.4133 38 1 5.4066 5.2323 1.2673 39 1 5.0662 4.4948 3.3193 40 1 2.8166 4.6406 5.1732 41 1 2.3058 3.0246 4.6293 42 1 1.6993 3.3969 7.0046 43 1 2.8977 2.0898 6.8480 44 1 3.5004 3.6346 8.6917 45 1 3.5145 4.9966 7.5461 46 1 5.2656 1.5679 6.6642 47 1 6.3809 -1.1760 10.0687 48 1 5.2162 5.0744 5.7184 49 1 6.4148 3.7680 5.5621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981160066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:23 Heat of formation + Delta-G solvation = -18.497992 kcal Electronic energy + Delta-G solvation = -30039.962923 eV Core-core repulsion = 26003.114240 eV Total energy + Delta-G solvation = -4036.848684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.62513 -41.04606 -39.41524 -39.11348 -36.25167 -35.14035 -34.61836 -33.09091 -32.24608 -30.67242 -30.39584 -29.76502 -27.35286 -25.47153 -25.04679 -24.32885 -23.38093 -23.07415 -22.09771 -21.21731 -20.10093 -19.80271 -19.01098 -17.87919 -17.41635 -17.23096 -17.12866 -16.72876 -16.48231 -16.13168 -15.93834 -15.79015 -15.51477 -15.37929 -15.05933 -14.90601 -14.66132 -14.51416 -14.13381 -13.94079 -13.79430 -13.48711 -13.19125 -13.01220 -12.98282 -12.69004 -12.50878 -12.42307 -12.21704 -12.17483 -11.87778 -11.85582 -11.62899 -11.56608 -11.31669 -11.00809 -10.89257 -10.87871 -10.42748 -10.15400 -10.00985 -9.26811 -8.03191 -5.32282 0.13687 1.12163 1.31183 1.35151 1.39259 1.61491 1.99240 2.10206 2.43960 2.82384 3.29482 3.42808 3.46789 3.60884 3.70733 3.82753 3.90050 3.91536 4.03178 4.10298 4.12843 4.31640 4.35231 4.37310 4.39662 4.46182 4.51323 4.52617 4.64270 4.65756 4.72917 4.74649 4.78738 4.85109 4.97678 5.09946 5.12798 5.27814 5.36293 5.40986 5.48459 5.56277 5.61612 5.64240 5.82454 5.93096 6.23084 6.39023 6.98941 7.08338 7.09849 7.89178 8.03884 9.18950 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.003335 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.567386 B = 8394.016939 C = 9307.758934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.067 3.933 4 C 0.117 3.883 5 N -0.268 5.268 6 N -0.299 5.299 7 C 0.003 3.997 8 C -0.165 4.165 9 C -0.058 4.058 10 C 0.582 3.418 11 O -0.577 6.577 12 N -0.688 5.688 13 C 0.149 3.851 14 H 0.048 0.952 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.128 4.128 18 C 0.172 3.828 19 H 0.059 0.941 20 N -0.751 5.751 21 C -0.213 4.213 22 H 0.067 0.933 23 C -0.058 4.058 24 N -0.982 5.982 25 Si 0.935 3.065 26 H -0.282 1.282 27 H -0.297 1.297 28 H -0.267 1.267 29 C -0.118 4.118 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.224 0.776 38 H 0.201 0.799 39 H 0.421 0.579 40 H 0.097 0.903 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.029 0.971 44 H 0.037 0.963 45 H 0.091 0.909 46 H 0.360 0.640 47 H 0.255 0.745 48 H 0.118 0.882 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 15.612 -24.658 30.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.011 4.011 4 C -0.004 4.004 5 N -0.057 5.057 6 N -0.130 5.130 7 C -0.173 4.173 8 C -0.194 4.194 9 C -0.185 4.185 10 C 0.368 3.632 11 O -0.457 6.457 12 N -0.340 5.340 13 C 0.044 3.956 14 H 0.066 0.934 15 C -0.150 4.150 16 C -0.148 4.148 17 C -0.168 4.168 18 C 0.064 3.936 19 H 0.077 0.923 20 N -0.395 5.395 21 C -0.344 4.344 22 H 0.085 0.915 23 C -0.249 4.249 24 N -0.634 5.634 25 Si 0.765 3.235 26 H -0.209 1.209 27 H -0.224 1.224 28 H -0.193 1.193 29 C -0.157 4.157 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.241 0.759 38 H 0.218 0.782 39 H 0.260 0.740 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.193 0.807 47 H 0.064 0.936 48 H 0.136 0.864 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.814 13.869 -25.167 30.057 hybrid contribution 0.150 -0.726 0.364 0.826 sum -8.664 13.143 -24.803 29.377 Atomic orbital electron populations 1.22995 0.78484 1.04417 1.01005 1.87781 1.22271 1.26833 1.95616 1.22497 0.92108 0.85602 1.00931 1.21805 0.93010 0.78760 1.06803 1.45521 1.43511 1.14469 1.02207 1.73231 1.18601 1.07347 1.13869 1.24311 1.01808 0.95412 0.95799 1.22778 1.03854 0.96773 0.95985 1.21523 1.11694 0.96462 0.88857 1.17290 0.77299 0.84422 0.84150 1.90829 1.48671 1.21128 1.85091 1.45548 1.63190 1.20453 1.04818 1.20903 0.96137 0.99118 0.79429 0.93409 1.21787 0.94678 1.02738 0.95764 1.21335 0.99474 0.99431 0.94524 1.22049 0.96111 1.00293 0.98328 1.20487 0.95075 0.83099 0.94964 0.92300 1.42994 1.84422 1.04794 1.07317 1.19094 1.35544 0.91596 0.88164 0.91527 1.25242 1.03290 0.98199 0.98210 1.69837 1.57131 1.12509 1.23938 0.85719 0.78135 0.79128 0.80566 1.20895 1.22393 1.19305 1.22021 0.98691 1.01929 0.93044 0.92201 0.87763 0.93789 0.93890 0.91389 0.86576 0.87605 0.75927 0.78231 0.74016 0.88452 0.93687 0.91105 0.95189 0.94401 0.89069 0.80684 0.93561 0.86397 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.68 16 2 O -0.41 -9.58 10.70 -148.98 -1.59 -11.18 16 3 C 0.07 1.48 6.26 71.98 0.45 1.93 16 4 C 0.12 2.77 6.28 86.38 0.54 3.32 16 5 N -0.27 -6.22 3.35 -334.68 -1.12 -7.34 16 6 N -0.30 -6.24 11.90 -57.14 -0.68 -6.92 16 7 C 0.00 0.04 12.03 85.19 1.02 1.07 16 8 C -0.17 -2.28 10.50 22.66 0.24 -2.04 16 9 C -0.06 -1.27 6.96 40.78 0.28 -0.99 16 10 C 0.58 15.47 7.76 86.59 0.67 16.14 16 11 O -0.58 -20.65 14.25 -4.12 -0.06 -20.70 16 12 N -0.69 -14.29 5.07 -446.04 -2.26 -16.55 16 13 C 0.15 3.99 2.33 44.99 0.10 4.09 16 14 H 0.05 1.78 5.87 -2.39 -0.01 1.76 16 15 C -0.11 -2.79 5.50 30.60 0.17 -2.62 16 16 C -0.11 -3.30 5.77 30.59 0.18 -3.12 16 17 C -0.13 -3.85 5.61 30.59 0.17 -3.68 16 18 C 0.17 5.76 3.10 44.99 0.14 5.90 16 19 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 20 N -0.75 -34.26 4.08 -322.97 -1.32 -35.58 16 21 C -0.21 -11.97 10.41 84.03 0.87 -11.09 16 22 H 0.07 4.03 8.06 -2.91 -0.02 4.00 16 23 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 24 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 25 Si 0.93 48.73 27.74 68.60 1.90 50.63 16 26 H -0.28 -14.46 7.11 99.48 0.71 -13.75 16 27 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 28 H -0.27 -13.46 6.52 99.48 0.65 -12.81 16 29 C -0.12 -2.84 5.08 30.59 0.16 -2.69 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.11 3.04 6.09 -2.39 -0.01 3.03 16 37 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.20 1.04 7.58 -2.91 -0.02 1.02 16 39 H 0.42 5.06 7.64 -92.71 -0.71 4.35 16 40 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.03 1.15 7.60 -2.39 -0.02 1.13 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.36 16.80 3.92 -92.71 -0.36 16.44 16 47 H 0.26 15.99 8.31 -92.71 -0.77 15.21 16 48 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -80.26 392.94 1.72 -78.53 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.17 Total: 27.83 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 6.72 Total: 4.86 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -5.08 Total: -129.98 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.65 Total: -31.88 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.90 Total: 50.63 kcal Total: -80.26 1.72 -78.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981160066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.034 kcal (2) G-P(sol) polarization free energy of solvation -80.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds